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BLAST algorithm

Accurate Protein Structure Annotation through Competitive Diffusion of Enzymatic Functions over a Network of Local Evolutionary Similarities

Eric Venner, Andreas Martin Lisewski, Serkan Erdin, R. Matthew Ward, Shivas R. Amin, Olivier Lichtarge

published 13 Dec 2010

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Molecular Species Identification with Rich Floristic Sampling: DNA Barcoding the Pteridophyte Flora of Japan

Atsushi Ebihara, Joel H. Nitta, Motomi Ito

published 08 Dec 2010

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De Novo Transcriptome Sequencing in Anopheles funestus Using Illumina RNA-Seq Technology

Jacob E. Crawford, Wamdaogo M. Guelbeogo, Antoine Sanou, Alphonse Traoré, Kenneth D. Vernick, N'Fale Sagnon, Brian P. Lazzaro

published 02 Dec 2010

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Evolution of Bacterial Phosphoglycerate Mutases: Non-Homologous Isofunctional Enzymes Undergoing Gene Losses, Gains and Lateral Transfers

Jeremy M. Foster, Paul J. Davis, Sylvine Raverdy, Marion H. Sibley, Elisabeth A. Raleigh, Sanjay Kumar, Clotilde K. S. Carlow

published 26 Oct 2010

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Adaptive GDDA-BLAST: Fast and Efficient Algorithm for Protein Sequence Embedding

Yoojin Hong, Jaewoo Kang, Dongwon Lee, Damian B. van Rossum

published 22 Oct 2010

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Genome-Wide Comparative Gene Family Classification

Christian Frech, Nansheng Chen

published 15 Oct 2010

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Detection and Alignment of 3D Domain Swapping Proteins Using Angle-Distance Image-Based Secondary Structural Matching Techniques

Chia-Han Chu, Wei-Cheng Lo, Hsin-Wei Wang, Yen-Chu Hsu, Jenn-Kang Hwang, Ping-Chiang Lyu, Tun-Wen Pai, Chuan Yi Tang

published 14 Oct 2010

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Murasaki: A Fast, Parallelizable Algorithm to Find Anchors from Multiple Genomes

Kris Popendorf, Hachiya Tsuyoshi, Yasunori Osana, Yasubumi Sakakibara

published 24 Sep 2010

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Prediction of Deleterious Non-Synonymous SNPs Based on Protein Interaction Network and Hybrid Properties

Tao Huang, Ping Wang, Zhi-Qiang Ye, Heng Xu, Zhisong He, Kai-Yan Feng, LeLe Hu, WeiRen Cui, Kai Wang, Xiao Dong, Lu Xie, Xiangyin Kong, Yu-Dong Cai, Yixue Li

published 30 Jul 2010

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Complete Nucleotide Sequence of CTX-M-15-Plasmids from Clinical Escherichia coli Isolates: Insertional Events of Transposons and Insertion Sequences

Annemieke Smet, Filip Van Nieuwerburgh, Tom T. M. Vandekerckhove, An Martel, Dieter Deforce, Patrick Butaye, Freddy Haesebrouck

published 18 Jun 2010

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An Extended Nomenclature for Mammalian V-ATPase Subunit Genes and Splice Variants

Kevin C. Miranda, Fiona E. Karet, Dennis Brown

published 10 Mar 2010

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Contrasting Patterns of Transposable Element Insertions in Drosophila Heat-Shock Promoters

Robert A. Haney, Martin E. Feder

published 29 Dec 2009

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A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies

Patrick D. Schloss

published 14 Dec 2009

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