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BLAST algorithm

Chromatin Immunoprecipitation to Analyze DNA Binding Sites of HMGA2

Nina Winter, Rolf Nimzyk, Carolin Bösche, Anke Meyer, Jörn Bullerdiek

published 14 Apr 2011

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Evaluating Ortholog Prediction Algorithms in a Yeast Model Clade

Leonidas Salichos, Antonis Rokas

published 13 Apr 2011

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Prediction of Antimicrobial Peptides Based on Sequence Alignment and Feature Selection Methods

Ping Wang, Lele Hu, Guiyou Liu, Nan Jiang, Xiaoyun Chen, Jianyong Xu, Wen Zheng, Li Li, Ming Tan, Zugen Chen, Hui Song, Yu-Dong Cai, Kuo-Chen Chou

published 13 Apr 2011

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Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

Robert Schmieder, Robert Edwards

published 09 Mar 2011

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Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance and Gene Transfer Elements

Erik Kristiansson, Jerker Fick, Anders Janzon, Roman Grabic, Carolin Rutgersson, Birgitta Weijdegård, Hanna Söderström, D. G. Joakim Larsson

published 16 Feb 2011

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Accurate Protein Structure Annotation through Competitive Diffusion of Enzymatic Functions over a Network of Local Evolutionary Similarities

Eric Venner, Andreas Martin Lisewski, Serkan Erdin, R. Matthew Ward, Shivas R. Amin, Olivier Lichtarge

published 13 Dec 2010

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Molecular Species Identification with Rich Floristic Sampling: DNA Barcoding the Pteridophyte Flora of Japan

Atsushi Ebihara, Joel H. Nitta, Motomi Ito

published 08 Dec 2010

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De Novo Transcriptome Sequencing in Anopheles funestus Using Illumina RNA-Seq Technology

Jacob E. Crawford, Wamdaogo M. Guelbeogo, Antoine Sanou, Alphonse Traoré, Kenneth D. Vernick, N'Fale Sagnon, Brian P. Lazzaro

published 02 Dec 2010

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Evolution of Bacterial Phosphoglycerate Mutases: Non-Homologous Isofunctional Enzymes Undergoing Gene Losses, Gains and Lateral Transfers

Jeremy M. Foster, Paul J. Davis, Sylvine Raverdy, Marion H. Sibley, Elisabeth A. Raleigh, Sanjay Kumar, Clotilde K. S. Carlow

published 26 Oct 2010

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Adaptive GDDA-BLAST: Fast and Efficient Algorithm for Protein Sequence Embedding

Yoojin Hong, Jaewoo Kang, Dongwon Lee, Damian B. van Rossum

published 22 Oct 2010

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Genome-Wide Comparative Gene Family Classification

Christian Frech, Nansheng Chen

published 15 Oct 2010

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Detection and Alignment of 3D Domain Swapping Proteins Using Angle-Distance Image-Based Secondary Structural Matching Techniques

Chia-Han Chu, Wei-Cheng Lo, Hsin-Wei Wang, Yen-Chu Hsu, Jenn-Kang Hwang, Ping-Chiang Lyu, Tun-Wen Pai, Chuan Yi Tang

published 14 Oct 2010

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Murasaki: A Fast, Parallelizable Algorithm to Find Anchors from Multiple Genomes

Kris Popendorf, Hachiya Tsuyoshi, Yasunori Osana, Yasubumi Sakakibara

published 24 Sep 2010

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