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BLAST algorithm

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

Robert Schmieder, Robert Edwards

Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance and Gene Transfer Elements

Erik Kristiansson, Jerker Fick, [ ... ], D. G. Joakim Larsson

Accurate Protein Structure Annotation through Competitive Diffusion of Enzymatic Functions over a Network of Local Evolutionary Similarities

Eric Venner, Andreas Martin Lisewski, [ ... ], Olivier Lichtarge

Molecular Species Identification with Rich Floristic Sampling: DNA Barcoding the Pteridophyte Flora of Japan

Atsushi Ebihara, Joel H. Nitta, Motomi Ito

De Novo Transcriptome Sequencing in Anopheles funestus Using Illumina RNA-Seq Technology

Jacob E. Crawford, Wamdaogo M. Guelbeogo, [ ... ], Brian P. Lazzaro

Evolution of Bacterial Phosphoglycerate Mutases: Non-Homologous Isofunctional Enzymes Undergoing Gene Losses, Gains and Lateral Transfers

Jeremy M. Foster, Paul J. Davis, [ ... ], Clotilde K. S. Carlow

Adaptive GDDA-BLAST: Fast and Efficient Algorithm for Protein Sequence Embedding

Yoojin Hong, Jaewoo Kang, Dongwon Lee, Damian B. van Rossum

Genome-Wide Comparative Gene Family Classification

Christian Frech, Nansheng Chen

Detection and Alignment of 3D Domain Swapping Proteins Using Angle-Distance Image-Based Secondary Structural Matching Techniques

Chia-Han Chu, Wei-Cheng Lo, [ ... ], Chuan Yi Tang

Murasaki: A Fast, Parallelizable Algorithm to Find Anchors from Multiple Genomes

Kris Popendorf, Hachiya Tsuyoshi, Yasunori Osana, Yasubumi Sakakibara

Prediction of Deleterious Non-Synonymous SNPs Based on Protein Interaction Network and Hybrid Properties

Tao Huang, Ping Wang, [ ... ], Yixue Li

Complete Nucleotide Sequence of CTX-M-15-Plasmids from Clinical Escherichia coli Isolates: Insertional Events of Transposons and Insertion Sequences

Annemieke Smet, Filip Van Nieuwerburgh, [ ... ], Freddy Haesebrouck

An Extended Nomenclature for Mammalian V-ATPase Subunit Genes and Splice Variants

Kevin C. Miranda, Fiona E. Karet, Dennis Brown

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