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BLAST algorithm

Sequence Imputation of HPV16 Genomes for Genetic Association Studies

Benjamin Smith, Zigui Chen, Laura Reimers, Koenraad van Doorslaer, Mark Schiffman, Rob DeSalle, Rolando Herrero, Kai Yu, Sholom Wacholder, Tao Wang, Robert D. Burk

published 23 Jun 2011

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Common Peptides Study of Aminoacyl-tRNA Synthetases

Assaf Gottlieb, Milana Frenkel-Morgenstern, Mark Safro, David Horn

published 27 May 2011

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Calpain Cleavage Prediction Using Multiple Kernel Learning

David A. duVerle, Yasuko Ono, Hiroyuki Sorimachi, Hiroshi Mamitsuka

published 03 May 2011

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Evolution of the Karyopherin-β Family of Nucleocytoplasmic Transport Factors; Ancient Origins and Continued Specialization

Amanda J. O'Reilly, Joel B. Dacks, Mark C. Field

published 27 Apr 2011

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Representative Proteomes: A Stable, Scalable and Unbiased Proteome Set for Sequence Analysis and Functional Annotation

Chuming Chen, Darren A. Natale, Robert D. Finn, Hongzhan Huang, Jian Zhang, Cathy H. Wu, Raja Mazumder

published 27 Apr 2011

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jMOTU and Taxonerator: Turning DNA Barcode Sequences into Annotated Operational Taxonomic Units

Martin Jones, Anisah Ghoorah, Mark Blaxter

published 25 Apr 2011

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CORE: A Phylogenetically-Curated 16S rDNA Database of the Core Oral Microbiome

Ann L. Griffen, Clifford J. Beall, Noah D. Firestone, Erin L. Gross, James M. DiFranco, Jori H. Hardman, Bastienne Vriesendorp, Russell A. Faust, Daniel A. Janies, Eugene J. Leys

published 22 Apr 2011

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Tasting Soil Fungal Diversity with Earth Tongues: Phylogenetic Test of SATé Alignments for Environmental ITS Data

Zheng Wang, R. Henrik Nilsson, Francesc Lopez-Giraldez, Wen-ying Zhuang, Yu-cheng Dai, Peter R. Johnston, Jeffrey P. Townsend

published 21 Apr 2011

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Chromatin Immunoprecipitation to Analyze DNA Binding Sites of HMGA2

Nina Winter, Rolf Nimzyk, Carolin Bösche, Anke Meyer, Jörn Bullerdiek

published 14 Apr 2011

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Evaluating Ortholog Prediction Algorithms in a Yeast Model Clade

Leonidas Salichos, Antonis Rokas

published 13 Apr 2011

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Prediction of Antimicrobial Peptides Based on Sequence Alignment and Feature Selection Methods

Ping Wang, Lele Hu, Guiyou Liu, Nan Jiang, Xiaoyun Chen, Jianyong Xu, Wen Zheng, Li Li, Ming Tan, Zugen Chen, Hui Song, Yu-Dong Cai, Kuo-Chen Chou

published 13 Apr 2011

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Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

Robert Schmieder, Robert Edwards

published 09 Mar 2011

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Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance and Gene Transfer Elements

Erik Kristiansson, Jerker Fick, Anders Janzon, Roman Grabic, Carolin Rutgersson, Birgitta Weijdegård, Hanna Söderström, D. G. Joakim Larsson

published 16 Feb 2011

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