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BLAST algorithm

The Internal Transcribed Spacer (ITS) Region and trnhH-psbA Are Suitable Candidate Loci for DNA Barcoding of Tropical Tree Species of India

Abhinandan Mani Tripathi, Antariksh Tyagi, Anoop Kumar, Akanksha Singh, Shivani Singh, Lal Babu Chaudhary, Sribash Roy

published 27 Feb 2013

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Resampling Nucleotide Sequences with Closest-Neighbor Trimming and Its Comparison to Other Methods

Kouki Yonezawa, Manabu Igarashi, Keisuke Ueno, Ayato Takada, Kimihito Ito

published 27 Feb 2013

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Barcode Server: A Visualization-Based Genome Analysis System

Fenglou Mao, Victor Olman, Yan Wang, Ying Xu

published 15 Feb 2013

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Increasing Sequence Search Sensitivity with Transitive Alignments

Ketil Malde, Tomasz Furmanek

published 14 Feb 2013

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Fungi in Thailand: A Case Study of the Efficacy of an ITS Barcode for Automatically Identifying Species within the Annulohypoxylon and Hypoxylon Genera

Nuttika Suwannasai, María P. Martín, Cherdchai Phosri, Prakitsin Sihanonth, Anthony J. S. Whalley, John L. Spouge

published 04 Feb 2013

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A Comprehensive Evaluation of Alignment Algorithms in the Context of RNA-Seq

Robert Lindner, Caroline C. Friedel

published 26 Dec 2012

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DNA Sequence Analysis of Plasmids from Multidrug Resistant Salmonella enterica Serotype Heidelberg Isolates

Jing Han, Aaron M. Lynne, Donna E. David, Hailin Tang, Joshua Xu, Rajesh Nayak, Pravin Kaldhone, Catherine M. Logue, Steven L. Foley

published 10 Dec 2012

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Characterization of Head Transcriptome and Analysis of Gene Expression Involved in Caste Differentiation and Aggression in Odontotermes formosanus (Shiraki)

Qiuying Huang, Pengdong Sun, Xuguo Zhou, Chaoliang Lei

published 29 Nov 2012

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The Duplicated Genes Database: Identification and Functional Annotation of Co-Localised Duplicated Genes across Genomes

Marion Ouedraogo, Charles Bettembourg, Anthony Bretaudeau, Olivier Sallou, Christian Diot, Olivier Demeure, Frédéric Lecerf

published 28 Nov 2012

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De-MetaST-BLAST: A Tool for the Validation of Degenerate Primer Sets and Data Mining of Publicly Available Metagenomes

Christopher A. Gulvik, T. Chad Effler, Steven W. Wilhelm, Alison Buchan

published 26 Nov 2012

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OTU Analysis Using Metagenomic Shotgun Sequencing Data

Xiaolin Hao, Ting Chen

published 26 Nov 2012

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Utility of the trnH–psbA Intergenic Spacer Region and Its Combinations as Plant DNA Barcodes: A Meta-Analysis

Xiaohui Pang, Chang Liu, Linchun Shi, Rui Liu, Dong Liang, Huan Li, Stacey S. Cherny, Shilin Chen

published 14 Nov 2012

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A Statistical Framework for Accurate Taxonomic Assignment of Metagenomic Sequencing Reads

Hongmei Jiang, Lingling An, Simon M. Lin, Gang Feng, Yuqing Qiu

published 01 Oct 2012

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