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BLAST algorithm

Transcriptomic Study Reveals Widespread Spliced Leader Trans-Splicing, Short 5′-UTRs and Potential Complex Carbon Fixation Mechanisms in the Euglenoid Alga Eutreptiella sp.

Rita C. Kuo, Huan Zhang, [ ... ], Senjie Lin

Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

Swee Hoe Ong, Vinutha Uppoor Kukkillaya, [ ... ], Niranjan Nagarajan

CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics

Tammi Vesth, Karin Lagesen, Öncel Acar, David Ussery

QC-Chain: Fast and Holistic Quality Control Method for Next-Generation Sequencing Data

Qian Zhou, Xiaoquan Su, [ ... ], Kang Ning

How Effective Are DNA Barcodes in the Identification of African Rainforest Trees?

Ingrid Parmentier, Jérôme Duminil, [ ... ], Olivier J. Hardy

Construction of Customized Sub-Databases from NCBI-nr Database for Rapid Annotation of Huge Metagenomic Datasets Using a Combined BLAST and MEGAN Approach

Ke Yu, Tong Zhang

Exploration of Noncoding Sequences in Metagenomes

Fabián Tobar-Tosse, Adrián C. Rodríguez, [ ... ], Pedro A. Moreno

DendroBLAST: Approximate Phylogenetic Trees in the Absence of Multiple Sequence Alignments

Steven Kelly, Philip K. Maini

An Artificial Functional Family Filter in Homolog Searching in Next-generation Sequencing Metagenomics

Ruofei Du, Donald Mercante, Zhide Fang

Identification of a Bacteria-Like Ferrochelatase in Strongyloides venezuelensis, an Animal Parasitic Nematode

Eiji Nagayasu, Sohta A. Ishikawa, [ ... ], Haruhiko Maruyama

PSimScan: Algorithm and Utility for Fast Protein Similarity Search

Anna Kaznadzey, Natalia Alexandrova, Vladimir Novichkov, Denis Kaznadzey

Whole-Genome Thermodynamic Analysis Reduces siRNA Off-Target Effects

Xi Chen, Peng Liu, Hui-Hsien Chou

De Novo Assembly, Gene Annotation and Marker Development Using Illumina Paired-End Transcriptome Sequences in Celery (Apium graveolens L.)

Nan Fu, Qian Wang, Huo-Lin Shen

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