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BLAST algorithm

Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

Swee Hoe Ong, Vinutha Uppoor Kukkillaya, Andreas Wilm, Christophe Lay, Eliza Xin Pei Ho, Louie Low, Martin Lloyd Hibberd, Niranjan Nagarajan

published 08 Apr 2013

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CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics

Tammi Vesth, Karin Lagesen, Öncel Acar, David Ussery

published 05 Apr 2013

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QC-Chain: Fast and Holistic Quality Control Method for Next-Generation Sequencing Data

Qian Zhou, Xiaoquan Su, Anhui Wang, Jian Xu, Kang Ning

published 02 Apr 2013

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How Effective Are DNA Barcodes in the Identification of African Rainforest Trees?

Ingrid Parmentier, Jérôme Duminil, Maria Kuzmina, Morgane Philippe, Duncan W. Thomas, David Kenfack, George B. Chuyong, Corinne Cruaud, Olivier J. Hardy

published 02 Apr 2013

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Construction of Customized Sub-Databases from NCBI-nr Database for Rapid Annotation of Huge Metagenomic Datasets Using a Combined BLAST and MEGAN Approach

Ke Yu, Tong Zhang

published 01 Apr 2013

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Exploration of Noncoding Sequences in Metagenomes

Fabián Tobar-Tosse, Adrián C. Rodríguez, Patricia E. Vélez, María M. Zambrano, Pedro A. Moreno

published 25 Mar 2013

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DendroBLAST: Approximate Phylogenetic Trees in the Absence of Multiple Sequence Alignments

Steven Kelly, Philip K. Maini

published 15 Mar 2013

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An Artificial Functional Family Filter in Homolog Searching in Next-generation Sequencing Metagenomics

Ruofei Du, Donald Mercante, Zhide Fang

published 14 Mar 2013

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Identification of a Bacteria-Like Ferrochelatase in Strongyloides venezuelensis, an Animal Parasitic Nematode

Eiji Nagayasu, Sohta A. Ishikawa, Shigeru Taketani, Gunimala Chakraborty, Ayako Yoshida, Yuji Inagaki, Haruhiko Maruyama

published 13 Mar 2013

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PSimScan: Algorithm and Utility for Fast Protein Similarity Search

Anna Kaznadzey, Natalia Alexandrova, Vladimir Novichkov, Denis Kaznadzey

published 07 Mar 2013

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Whole-Genome Thermodynamic Analysis Reduces siRNA Off-Target Effects

Xi Chen, Peng Liu, Hui-Hsien Chou

published 06 Mar 2013

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De Novo Assembly, Gene Annotation and Marker Development Using Illumina Paired-End Transcriptome Sequences in Celery (Apium graveolens L.)

Nan Fu, Qian Wang, Huo-Lin Shen

published 28 Feb 2013

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De Novo Transcriptome Assembly (NGS) of Curcuma longa L. Rhizome Reveals Novel Transcripts Related to Anticancer and Antimalarial Terpenoids

Ramasamy S. Annadurai, Ramprasad Neethiraj, Vasanthan Jayakumar, Anand C. Damodaran, Sudha Narayana Rao, Mohan A. V. S. K. Katta, Sreeja Gopinathan, Santosh Prasad Sarma, Vanitha Senthilkumar, Vidya Niranjan, Ashok Gopinath, Raja C. Mugasimangalam

published 28 Feb 2013

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