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BLAST algorithm

Fast and Accurate Discovery of Degenerate Linear Motifs in Protein Sequences

Abdellali Kelil, Benjamin Dubreuil, Emmanuel D. Levy, Stephen W. Michnick

Hybrid Approach for Predicting Coreceptor Used by HIV-1 from Its V3 Loop Amino Acid Sequence

Ravi Kumar, Gajendra P. S. Raghava

eDNA as a tool for non-invasive monitoring of the fauna of a turbid, well-mixed system, the Elbe estuary in Germany

Martin Schwentner, Reza Zahiri, [ ... ], Ralf Thiel

Deep mRNA Sequencing of the Tritonia diomedea Brain Transcriptome Provides Access to Gene Homologues for Neuronal Excitability, Synaptic Transmission and Peptidergic Signalling

Adriano Senatore, Neranjan Edirisinghe, Paul S. Katz

Displacement of the Predominant Dengue Virus from Type 2 to Type 1 with a Subsequent Genotype Shift from IV to I in Surabaya, Indonesia 2008–2010

Atsushi Yamanaka, Kris C. Mulyatno, [ ... ], Eiji Konishi

De novo Sequencing, Characterization, and Comparison of Inflorescence Transcriptomes of Cornus canadensis and C. florida (Cornaceae)

Jian Zhang, Robert G. Franks, [ ... ], Qiu-Yun (Jenny) Xiang

Fungi in Thailand: A Case Study of the Efficacy of an ITS Barcode for Automatically Identifying Species within the Annulohypoxylon and Hypoxylon Genera

Nuttika Suwannasai, María P. Martín, [ ... ], John L. Spouge

Learning supervised embeddings for large scale sequence comparisons

Dhananjay Kimothi, Pravesh Biyani, [ ... ], Wayne Kelly

TreeSeq, a Fast and Intuitive Tool for Analysis of Whole Genome and Metagenomic Sequence Data

Bastiaan B. Wintermans, Bernd W. Brandt, Christina M. J. E. Vandenbroucke-Grauls, Andries E. Budding

Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics

Robert A. Syme, Kar-Chun Tan, [ ... ], Richard P. Oliver

SEAS: A System for SEED-Based Pathway Enrichment Analysis

Xizeng Mao, Yu Zhang, Ying Xu

Isolation and characterization of a N4-like lytic bacteriophage infecting Vibrio splendidus, a pathogen of fish and bivalves

Pantelis Katharios, Panos G. Kalatzis, [ ... ], Mathias Middelboe

Identification of Antigens Specific to Non-Tuberculous Mycobacteria: The Mce Family of Proteins as a Target of T Cell Immune Responses

Anna M. Checkley, David H. Wyllie, [ ... ], Helen McShane

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