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BLAST algorithm

Fast and Accurate Discovery of Degenerate Linear Motifs in Protein Sequences

Abdellali Kelil, Benjamin Dubreuil, Emmanuel D. Levy, Stephen W. Michnick

Amplification Biases and Consistent Recovery of Loci in a Double-Digest RAD-seq Protocol

Jeffrey M. DaCosta, Michael D. Sorenson

Comparative Analysis of Functional Metagenomic Annotation and the Mappability of Short Reads

Rogan Carr, Elhanan Borenstein

Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data

Peter Skewes-Cox, Thomas J. Sharpton, Katherine S. Pollard, Joseph L. DeRisi

A Rank-Based Sequence Aligner with Applications in Phylogenetic Analysis

Liviu P. Dinu, Radu Tudor Ionescu, Alexandru I. Tomescu

A Comprehensive Reference Transcriptome Resource for the Common House Spider Parasteatoda tepidariorum

Nico Posnien, Victor Zeng, [ ... ], Cassandra G. Extavour

GHOSTX: An Improved Sequence Homology Search Algorithm Using a Query Suffix Array and a Database Suffix Array

Shuji Suzuki, Masanori Kakuta, Takashi Ishida, Yutaka Akiyama

Fast and Sensitive Alignment of Microbial Whole Genome Sequencing Reads to Large Sequence Datasets on a Desktop PC: Application to Metagenomic Datasets and Pathogen Identification

Lőrinc S. Pongor, Roberto Vera, Balázs Ligeti

Molecular and Morphological Identification of Mealybug Species (Hemiptera: Pseudococcidae) in Brazilian Vineyards

Vitor C. Pacheco da Silva, Aline Bertin, [ ... ], Thibaut Malausa

Gene Discovery through Transcriptome Sequencing for the Invasive Mussel Limnoperna fortunei

Marcela Uliano-Silva, Juliana Alves Americo, [ ... ], Mauro de Freitas Rebelo

Quickly Finding Orthologs as Reciprocal Best Hits with BLAT, LAST, and UBLAST: How Much Do We Miss?

Natalie Ward, Gabriel Moreno-Hagelsieb

WImpiBLAST: Web Interface for mpiBLAST to Help Biologists Perform Large-Scale Annotation Using High Performance Computing

Parichit Sharma, Shrikant S. Mantri

Response of the Hepatic Transcriptome to Aflatoxin B₁ in Domestic Turkey (Meleagris gallopavo)

Melissa S. Monson, Robert E. Settlage, [ ... ], Kent M. Reed

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