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BLAST algorithm

Gentle Masking of Low-Complexity Sequences Improves Homology Search

Martin C. Frith

Exploration of Noncoding Sequences in Metagenomes

Fabián Tobar-Tosse, Adrián C. Rodríguez, [ ... ], Pedro A. Moreno

Molecular Characterization of a Multidrug Resistance IncF Plasmid from the Globally Disseminated Escherichia coli ST131 Clone

Minh Duy Phan, Brian M. Forde, [ ... ], Mark A. Schembri

INDIGO – INtegrated Data Warehouse of MIcrobial GenOmes with Examples from the Red Sea Extremophiles

Intikhab Alam, André Antunes, [ ... ], Vladimir B. Bajic

Fast and Sensitive Alignment of Microbial Whole Genome Sequencing Reads to Large Sequence Datasets on a Desktop PC: Application to Metagenomic Datasets and Pathogen Identification

Lőrinc S. Pongor, Roberto Vera, Balázs Ligeti

FastBLAST: Homology Relationships for Millions of Proteins

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

WImpiBLAST: Web Interface for mpiBLAST to Help Biologists Perform Large-Scale Annotation Using High Performance Computing

Parichit Sharma, Shrikant S. Mantri

Murasaki: A Fast, Parallelizable Algorithm to Find Anchors from Multiple Genomes

Kris Popendorf, Hachiya Tsuyoshi, Yasunori Osana, Yasubumi Sakakibara

CoMeta: Classification of Metagenomes Using k-mers

Jolanta Kawulok, Sebastian Deorowicz

Prediction of Detailed Enzyme Functions and Identification of Specificity Determining Residues by Random Forests

Chioko Nagao, Nozomi Nagano, Kenji Mizuguchi

Sequence Imputation of HPV16 Genomes for Genetic Association Studies

Benjamin Smith, Zigui Chen, [ ... ], Robert D. Burk

Gene Discovery through Transcriptome Sequencing for the Invasive Mussel Limnoperna fortunei

Marcela Uliano-Silva, Juliana Alves Americo, [ ... ], Mauro de Freitas Rebelo

The Duplicated Genes Database: Identification and Functional Annotation of Co-Localised Duplicated Genes across Genomes

Marion Ouedraogo, Charles Bettembourg, [ ... ], Frédéric Lecerf

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