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BLAST algorithm

GenBank mining reveals novel insights into Rhizobium phylogeny: Identical 16S rRNA sequences are mainly uncoupled from species designation, host plant, and geographic origin: How this search suggested the definition of a direct ‘microbial h-index’

Rosella Muresu, Monica Rodriguez, Andrea Squartini

published 11 Sep 2026

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Structural analysis of recombinant AAV vector genomes at single-molecule resolution

David Rouleau, Dimpal Lata, Serena Dollive, Robert E. Bruccoleri, Laura Van Lieshout, Diane Golebiowski, Ifeyinwa Iwuchukwu

published 30 Jul 2026

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Comparative genomics-based development of a LAMP assay for rapid and reliable in-field detection of Fusarium oxysporum f. sp. cubense tropical race 4

Mikel Arrieta Salgado, Diane Mostert, Sebastien Ravel, Samuel Rozsasi, Veronique Maillot-Lebon, Agus Sutanto, Catur Hermanto, Mouzdalifa Mmadi, Abdou Azali Hamza, Nadia Adjanoh-Lubin, Babitha Fenelon, Henri Adreit, Sandrine Fabre, Beatrix Coetzee, J. Jansen van Vuuren, Sheryl Le Roux, Altus Viljoen, Yolande Chilin-Charles, Jean Carlier, Camilo Gianinazzi, Emmanuel Wicker, Isabelle Robène

published 29 Apr 2026

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Non-destructive environmental DNA extracted from owl pellet contents: A valuable tool for monitoring mammalian species richness

Pia Schoenefuss, Paul Whatmore, Craig Windell, Andrew M. Baker, David A. Hurwood

published 09 Mar 2026

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Highly sensitive molecular assay based on Identical Multi-Repeat Sequence (IMRS) algorithm for the detection of Trichomonas vaginalis infection

Clement Shiluli, Shwetha Kamath, Bernard N. Kanoi, Racheal Kimani, Bernard Oduor, Hussein M. Abkallo, Michael Maina, Harrison Waweru, Moses Kamita, Nicole Pamme, Joshua Dupaty, Catherine M. Klapperich, Srinivasa Raju Lolabattu, Jesse Gitaka

published 07 Feb 2025

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The ionic liquid-assisted sample preparation method pTRUST allows sensitive proteome characterization of a variety of bacterial endospores to aid in the search for protein biomarkers

Masato Taoka, Ritsuko Kuwana, Yoshinari Murakami, Akiko Kashima, Yuko Nobe, Takamasa Uekita, Hiromu Takamatsu, Tohru Ichimura

published 24 Jan 2025

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Evaluation of VP4-VP2 sequencing for molecular typing of human enteroviruses

Kouichi Kitamura, Minetaro Arita

published 10 Dec 2024

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Improve the Hunger Games search algorithm to optimize the GoogleNet model

Yanqiu Li, Shizheng Qu, Huan Liu

published 16 Aug 2024

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CANDy: Automated analysis of domain architectures in carbohydrate-active enzymes

Alex Windels, Jorick Franceus, Jürgen Pleiss, Tom Desmet

published 11 Jul 2024

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Psychoactive and other ceremonial plants from a 2,000-year-old Maya ritual deposit at Yaxnohcah, Mexico

David L. Lentz, Trinity L. Hamilton, Stephanie A. Meyers, Nicholas P. Dunning, Kathryn Reese-Taylor, Armando Anaya Hernández, Debra S. Walker, Eric J. Tepe, Atasta Flores Esquivel, Alison A. Weiss

published 26 Apr 2024

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A fast comparative genome browser for diverse bacteria and archaea

Morgan N. Price, Adam P. Arkin

published 09 Apr 2024

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Characterisation of IS1311 in Mycobacterium avium subspecies paratuberculosis genomes: Typing, continental clustering, microbial evolution and host adaptation

Rachel Mizzi, Karren M. Plain, Verlaine J. Timms, Ian Marsh, Richard J. Whittington

published 13 Feb 2024

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Portable BLAST-like algorithm library and its implementations for command line, Python, and R

Steven Schmid, Aditya Jeevannavar, Timothy R. Julian, Manu Tamminen

published 30 Nov 2023

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