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Bird genomics

Horizontal transfer of probable chicken-pathogenicity chromosomal islands between Staphylococcus aureus and Staphylococcus agnetis

Douglas D. Rhoads, Jeff Pummil, Nnamdi S. Ekesi, Adnan A. K. Alrubaye

Identification of GC-rich LAT genes in birds

Sarka Janusova, Veronika Krchlikova, [ ... ], Ondrej Stepanek

Target-enriched enzymatic methyl sequencing: Flexible, scalable and inexpensive hybridization capture for quantifying DNA methylation

Dustin R. Rubenstein, Joseph Solomon

Investigation of a herpesvirus outbreak in mixed breeds of adult domestic ducks using next generation sequencing

Hassan Abu Damir, Waqar Ahmad, [ ... ], Farah Mustafa

Genetic characterization of a novel pheasant-origin orthoreovirus using Next-Generation Sequencing

Yi Tang, Haiyang Yu, [ ... ], Huaguang Lu

Rapid genotyping of targeted viral samples using Illumina short-read sequencing data

Alex Váradi, Eszter Kaszab, [ ... ], Levente Laczkó

Eradication of avian leukosis virus subgroups J and K in broiler cross chickens by selection against infected birds using multilocus PCR

Alexander M. Borodin, Zhanna V. Emanuilova, [ ... ], Yakov I. Alekseev

Genetic subtyping and phylogenetic analysis of HA and NA from avian influenza virus in wild birds from Peru reveals unique features among circulating strains in America

Gina R. Castro-Sanguinetti, Paulo Vitor Marques Simas, [ ... ], Maria Eliana Icochea

CHAPAO: Likelihood and hierarchical reference-based representation of biomolecular sequences and applications to compressing multiple sequence alignments

Md Ashiqur Rahman, Abdullah Aman Tutul, Sifat Muhammad Abdullah, Md. Shamsuzzoha Bayzid

Comparative analysis of alignment-free genome clustering and whole genome alignment-based phylogenomic relationship of coronaviruses

Anastasiya D. Kirichenko, Anastasiya A. Poroshina, [ ... ], Konstantin V. Krutovsky

Travel ban effects on SARS-CoV-2 transmission lineages in the UAE as inferred by genomic epidemiology

Andreas Henschel, Samuel F. Feng, [ ... ], on behalf of the UAE COVID-19 Collaborative Partnership

Whole-genome based strain identification of fowlpox virus directly from cutaneous tissue and propagated virus

Kinza Asif, Denise O’Rourke, [ ... ], Amir H. Noormohammadi

Social network analysis and whole-genome sequencing to evaluate disease transmission in a large, dynamic population: A study of avian mycobacteriosis in zoo birds

Carmel Witte, James H. Fowler, [ ... ], Bruce A. Rideout

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