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Bird genomics

Detection of Deltacoronavirus in environmental fecal samples from seabirds in the Saint Peter and Saint Paul Archipelago, central equatorial Atlantic Ocean

Fernanda Gomes, Alexandre Freitas da Silva, Tatiana Prado, Marina Galvão Bueno, Luciana Appolinario, Patrícia Soares Flores, Paola Cristina Resende, Marilda Siqueira, Leonardo Corrêa, Martha Brandão, Jose Reck, Gabriel Luz Wallau, Maria Ogrzewalska

published 03 Jun 2025

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Genomic insights into the serovar prevalence, antimicrobial resistance gene, and genetic diversity of Salmonella enterica in Mexico

Luis Lozano-Aguirre, Josefina Duran-Bedolla, Juan Téllez-Sosa, Cindy Fabiola Hernández-Pérez, Ismael Hernández-Lucas, Humberto Barrios-Camacho

published 15 May 2025

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Comparative genomics of Mycobacterium avium subsp. hominissuis strains within a group of captive lowland tapirs

Hanka Brangsch, Sandra Marcordes, Anne Busch, Michael Weber, Silver A. Wolf, Torsten Semmler, Dirk Höper, Sten Calvelage, Jörg Linde, Stefanie A. Barth

published 01 Apr 2025

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Taking advantage of reference-guided assembly in a slowly-evolving lineage: Application to Testudo graeca

Andrea Mira-Jover, Eva Graciá, Andrés Giménez, Uwe Fritz, Roberto Carlos Rodríguez-Caro, Yann Bourgeois

published 09 Aug 2024

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One-pot Golden Gate Assembly of an avian infectious bronchitis virus reverse genetics system

Katharina Bilotti, Sarah Keep, Andrew P. Sikkema, John M. Pryor, James Kirk, Katalin Foldes, Nicole Doyle, Ge Wu, Graham Freimanis, Giulia Dowgier, Oluwapelumi Adeyemi, S. Kasra Tabatabaei, Gregory J. S. Lohman, Erica Bickerton

published 25 Jul 2024

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Species-specific dynamics may cause deviations from general biogeographical predictions – evidence from a population genomics study of a New Guinean endemic passerine bird family (Melampittidae)

Ingo A. Müller, Filip Thörn, Samyuktha Rajan, Per G. P. Ericson, John P. Dumbacher, Gibson Maiah, Mozes P. K. Blom, Knud A. Jønsson, Martin Irestedt

published 23 May 2024

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Evidence of reassortment of avian influenza A (H2) viruses in Brazilian shorebirds

Luciano M. Thomazelli, João Renato Rebello Pinho, Erick G. Dorlass, Tatiana Ometto, Carla Meneguin, Danielle Paludo, Rodolfo Teixeira Frias, Patricia Luciano Mancini, Cairo Monteiro, Sophie Marie Aicher, David Walker, Guilherme P. Scagion, Scott Krauss, Thomas Fabrizio, Maria Virgínia Petry, Angelo L. Scherer, Janete Scherer, Patricia P. Serafini, Isaac S. Neto, Deyvid Emanuel Amgarten, Fernanda de Mello Malta, Ana Laura Boechat Borges, Robert G. Webster, Richard J. Webby, Edison L. Durigon, Jansen de Araujo

published 13 May 2024

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Detection of lymphoproliferative disease virus in Iowa Wild Turkeys (Meleagris gallopavo): Comparison of two sections of the proviral genome

Kelsey C. Smith, Julie A. Blanchong

published 12 Feb 2024

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High-resolution genomic analysis to investigate the impact of the invasive brushtail possum (Trichosurus vulpecula) and other wildlife on microbial water quality assessments

Marie Moinet, Lynn Rogers, Patrick Biggs, Jonathan Marshall, Richard Muirhead, Megan Devane, Rebecca Stott, Adrian Cookson

published 18 Jan 2024

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Virulome analysis of Escherichia coli ST117 from bovine sources identifies similarities and differences with strains isolated from other food animals

Bradd J. Haley, Serajus Salaheen, Seon Woo Kim, Jo Ann Van Kessel

published 04 Jan 2024

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Lack of local genetic representation in one of the regions with the highest bird species richness, the Peruvian Amazonia

Alejandra Arana, César Arana, Mrinalini Watsa, Mathias W. Tobler, Víctor Pacheco, Juan Esteves, José Luis Mena, Letty Salinas, Jorge L. Ramirez

published 02 Jan 2024

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A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing

Per A. Adastra, Neva C. Durand, Namita Mitra, Saul Godinez Pulido, Ragini Mahajan, Alyssa Blackburn, Zane L. Colaric, Joshua W. M. Theisen, David Weisz, Olga Dudchenko, Andreas Gnirke, Suhas S. P. Rao, Parwinder Kaur, Erez Lieberman Aiden, Aviva Presser Aiden

published 30 Nov 2023

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Rapid and sensitive detection of waterfowl mycoplasmas using TaqMan assays

Edina Nemesházi, Enikő Wehmann, Dénes Grózner, Dorottya Sára Nagy, Áron Botond Kovács, Dorottya Földi, Zsuzsa Kreizinger, Miklós Gyuranecz

published 14 Jul 2023

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