Bacteriology

Investigation of mobile genetic elements and their association with antibiotic resistance genes in clinical pathogens worldwide

Markus H. K. Johansson, Thomas N. Petersen, Sidsel Nag, Timmie M. R. Lagermann, Laura E.K. Birkedahl, Silva Tafaj, Susan Bradbury, Peter Collignon, Denise Daley, Victorien Dougnon, Kafayath Fabiyi, Boubacar Coulibaly, Réné Dembélé, Natama Magloire, Isidore J. Ouindgueta, Zenat Z. Hossain, Anowara Begoum, Deyan Donchev, Mathew Diggle, LeeAnn Turnbull, Simon Lévesque, Livia Berlinger, Kirstine K. Søgaard, Paula D. Guevara, Carolina Duarte, Panagiota Maikanti, Jana Amlerova, Pavel Drevinek, Jan Tkadlec, Milica Dilas, Achim Kaasch, Henrik T. Westh, Mohamed A. Bachtarzi, Wahiba Amhis, Carolina E.S. Salazar, José E. Villacis, Mária A. D. Lúzon, Dàmaris B. Palau, Claire Duployez, Maxime Paluche, Solomon Asante-Sefa, Mie Møller, Margaret Ip, Ivana Mareković, Agnes Pál-Sonnevend, Clementiza E. Cocuzza, Asta Dambrauskiene, Alexandre Macanze, Anelsio Cossa, Inácio Mandomando, Philip Nwajiobi-Princewill, Iruka N. Okeke, Aderemi O. Kehinde, Ini Adebiyi, Ifeoluwa Akintayo, Oluwafemi Popoola, Anthony Onipede, Anita Blomfeldt, Nora E. Nyquist, Kiri Bocker, James Ussher, Amjad Ali, Nimat Ullah, Habibullah Khan, Natalie W. Gustafson, Ikhlas Jarrar, Arif Al-Hamad, Viravarn Luvira, Wantana Paveenkittiporn, Irmak Baran, James C. L. Mwansa, Linda Sikakwa, Kaunda Yamba, Frank M. Aarestrup

published 18 Aug 2025

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Genome-driven insights into Bacillus safensis strain B7 as a seed coating agent for plant growth promotion and alleviation of biotic and abiotic stresses

Maissa Ben-Jabeur, Zayneb Kthiri, Salma Jallouli, Kalthoum Harbaoui, Zoubeir Chamekh, Sawsen Ayadi, Youssef Trifa, Walid Hamada

published 18 Aug 2025

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Superoxide dismutase VPA1514 in Vibrio parahaemolyticus protects against environmental stresses

Paula Hsu, Hin-chung Wong, Chung-Tao Tang

published 14 Aug 2025

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Stabilized and unstabilized sampling methods result in differential fecal 16S rRNA microbial sequencing results

Christopher E. Stamper, Andrew J. Hoisington, Joseph C. Ellis, Christopher A. Lowry, Lisa A. Brenner

published 13 Aug 2025

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In vitro study of probiotic Lactobacillus helveticus: Antibacterial effects on Porphyromonas gingivalis

Husna Hazirah Bakri, Syarifah Nur Syed Abdul Rahman, Adyani Azizah Abd Halim, Nor Adinar Baharuddin, Hasnah Begum Said Gulam Khan, Zamirah Zainal Abidin, Mohd Hafiz Arzmi, Elly Munadziroh, Wan Himratul Aznita Wan Harun

published 08 Aug 2025

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Bag-of-words is competitive with sum-of-embeddings language-inspired representations on protein inference

Frixos Papadopoulos, Tilman Sanchez-Elsner, Mahesan Niranjan, Ashley I. Heinson

published 06 Aug 2025

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CRISPR/Cas9-targeted smpB mutation revealing roles in biofilm formation, motility, and antibiotic susceptibility in Acinetobacter baumannii

Techit Thavorasak, Sirijan Santajit, Witawat Tunyong, Thida Kong-Ngoen, Onrapak Reamtong, Sumate Ampawong, Nawannaporn Saelim, Thapani Srisai, Pisinee Aiumurai, Pornpan Pumirat, Wanpen Chaicumpa, Nitaya Indrawattana

published 04 Aug 2025

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The porphyran degradation system is complete, phylogenetically and geographically diverse across the gut microbiota of East Asian populations

Laure Ségurel, Thirumalai Selvi Ulaganathan, Sophie Mathieu, Mélanie Loiodice, Laurent Poulet, Sophie Drouillard, Miroslaw Cygler, William Helbert

published 01 Aug 2025

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OpDetect: A convolutional and recurrent neural network classifier for precise and sensitive operon detection from RNA-seq data

Rezvan Karaji, Lourdes Peña-Castillo

published 01 Aug 2025

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Burden of gram-positive bacteria from urinary tract infection: A four-year retrospective study in a tertiary health setting in southern Saudi Arabia

Abdullah M. Alkahtani, Abdulah J. Alqahtani, Abdulaziz Alamri, Mohammed Mushabab Assiry, Mona Elfaki, Yahya Mohammed Shabi, Mohamed E. Hamid

published 01 Aug 2025

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Post-caesarean section infection burden, antimicrobial resistance pattern, and associated factors at all Africa Leprosy Rehabilitation and Training Center Comprehensive Specialized Hospital, Addis Ababa, Ethiopia

Namuna Ali, Sebsib Neway, Kassu Desta

published 31 Jul 2025

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Benthic biofilm structure and function under abrupt flow changes

Julie Anne Hope, Julia Kleinteich, Sabine Ulrike Gerbersdorf

published 23 Jul 2025

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Bioinformatics and modelling studies of FhuD, the periplasmic siderophore binding protein from the plant pathogen Erwinia amylovora

Sharda Bharti, Lavinia Carlini, Alfonso Esposito, Stefano Benini

published 23 Jul 2025

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Bacteriology

Investigation of mobile genetic elements and their association with antibiotic resistance genes in clinical pathogens worldwide

Genome-driven insights into Bacillus safensis strain B7 as a seed coating agent for plant growth promotion and alleviation of biotic and abiotic stresses

Superoxide dismutase VPA1514 in Vibrio parahaemolyticus protects against environmental stresses

Stabilized and unstabilized sampling methods result in differential fecal 16S rRNA microbial sequencing results

In vitro study of probiotic Lactobacillus helveticus: Antibacterial effects on Porphyromonas gingivalis

Bag-of-words is competitive with sum-of-embeddings language-inspired representations on protein inference

CRISPR/Cas9-targeted smpB mutation revealing roles in biofilm formation, motility, and antibiotic susceptibility in Acinetobacter baumannii

The porphyran degradation system is complete, phylogenetically and geographically diverse across the gut microbiota of East Asian populations

OpDetect: A convolutional and recurrent neural network classifier for precise and sensitive operon detection from RNA-seq data

Burden of gram-positive bacteria from urinary tract infection: A four-year retrospective study in a tertiary health setting in southern Saudi Arabia

Post-caesarean section infection burden, antimicrobial resistance pattern, and associated factors at all Africa Leprosy Rehabilitation and Training Center Comprehensive Specialized Hospital, Addis Ababa, Ethiopia

Benthic biofilm structure and function under abrupt flow changes

Bioinformatics and modelling studies of FhuD, the periplasmic siderophore binding protein from the plant pathogen Erwinia amylovora

Bacteriology

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