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Bacterial taxonomy

Exploring the interplay between the core microbiota, physicochemical factors, agrobiochemical cycles in the soil of the historic tokaj mád wine region

Judit Remenyik, László Csige, Péter Dávid, Péter Fauszt, Anna Anita Szilágyi-Rácz, Erzsébet Szőllősi, Zsófia Réka Bacsó, István Szepsy Jnr, Krisztina Molnár, Csaba Rácz, Gábor Fidler, Zoltán Kállai, László Stündl, Attila Csaba Dobos, Melinda Paholcsek

published 16 Apr 2024

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Bacterial diversity and composition on the rinds of specific melon cultivars and hybrids from across different growing regions in the United States

Madison Goforth, Victoria Obergh, Richard Park, Martin Porchas, Kevin M. Crosby, John L. Jifon, Sadhana Ravishankar, Paul Brierley, Daniel L. Leskovar, Thomas A. Turini, Jonathan Schultheis, Timothy Coolong, Rhonda Miller, Hisashi Koiwa, Bhimanagouda S. Patil, Margarethe A. Cooper, Steven Huynh, Craig T. Parker, Wenjing Guan, Kerry K. Cooper

published 11 Apr 2024

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Gradients of bacteria in the oceanic water column reveal finely-resolved vertical distributions

Rachel C. Harbeitner, Fabian Wittmers, Charmaine C. M. Yung, Charlotte A. Eckmann, Elisabeth Hehenberger, Marguerite Blum, David M. Needham, Alexandra Z. Worden

published 02 Apr 2024

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Diversity and plant growth promoting ability of rice root-associated bacteria in Burkina-Faso and cross-comparison with metabarcoding data

Moussa Sondo, Issa Wonni, Kadidia Koïta, Isabelle Rimbault, Mariam Barro, Charlotte Tollenaere, Lionel Moulin, Agnieszka Klonowska

published 30 Nov 2023

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Quantification of diversity sampling bias resulting from rice root bacterial isolation on popular and nitrogen-free culture media using 16S amplicon barcoding

Moussa Sondo, Issa Wonni, Agnieszka Klonowska, Kadidia Koïta, Lionel Moulin

published 06 Apr 2023

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Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples

Katherine A. Maki, Brian Wolff, Leonardo Varuzza, Stefan J. Green, Jennifer J. Barb

published 13 Jan 2023

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Effects of different amoxicillin treatment durations on microbiome diversity and composition in the gut

Katrine Lekang, Sudhanshu Shekhar, Dag Berild, Fernanda Cristina Petersen, Hanne C. Winther-Larsen

published 27 Oct 2022

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A taxonomically representative strain collection to explore xenobiotic and secondary metabolism in bacteria

Evanthia Kontomina, Vasiliki Garefalaki, Konstantina C. Fylaktakidou, Dorothea Evmorfidou, Athina Eleftheraki, Marina Avramidou, Karen Udoh, Maria Panopoulou, Tamás Felföldi, Károly Márialigeti, Giannoulis Fakis, Sotiria Boukouvala

published 14 Jul 2022

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Development of an efficient antimicrobial susceptibility testing method with species identification by Nanopore sequencing of 16S rRNA amplicons

Yuto Kawai, Naoya Ozawa, Takako Fukuda, Noriyuki Suzuki, Kazuki Mikata

published 03 Feb 2022

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NGS read classification using AI

Benjamin Voigt, Oliver Fischer, Christian Krumnow, Christian Herta, Piotr Wojciech Dabrowski

published 22 Dec 2021

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Ubiquitous flocculation activity and flocculation production basis of the conglutination mud from Ruditapes philippinarum along the coast of China

Jun Mu, Yuxia Wang, Xia Cui, Qiao Yang

published 18 Nov 2021

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Bacterial diversity dynamics in microbial consortia selected for lignin utilization

Isis Viana Mendes, Mariana Botelho Garcia, Ana Carolina Araújo Bitencourt, Renata Henrique Santana, Philippe de Castro Lins, Rafaella Silveira, Blake A. Simmons, John M. Gladden, Ricardo Henrique Kruger, Betania Ferraz Quirino

published 13 Sep 2021

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Predictive functional analysis reveals inferred features unique to cervicovaginal microbiota of African women with bacterial vaginosis and high-risk human papillomavirus infection

Harris Onywera, Joseph Anejo-Okopi, Lamech M. Mwapagha, Javan Okendo, Anna-Lise Williamson

published 18 Jun 2021

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