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Bacterial genetics

An atlas of robust microbiome associations with phenotypic traits based on large-scale cohorts from two continents

Daphna Rothschild, Sigal Leviatan, Ariel Hanemann, Yossi Cohen, Omer Weissbrod, Eran Segal

published 24 Mar 2022

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Virulome and genome analyses identify associations between antimicrobial resistance genes and virulence factors in highly drug-resistant Escherichia coli isolated from veal calves

Bradd J. Haley, Seon Woo Kim, Serajus Salaheen, Ernest Hovingh, Jo Ann S. Van Kessel

published 17 Mar 2022

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Distinction of Paramecium strains by a combination method of RAPD analysis and multiplex PCR

Sonoko Matsumoto, Kenta Watanabe, Hiroko Kiyota, Masato Tachibana, Takashi Shimizu, Masahisa Watarai

published 11 Mar 2022

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Whole genome sequence of pan drug-resistant clinical isolate of Acinetobacter baumannii ST1890

Thanwa Wongsuk, Siriphan Boonsilp, Anchalee Homkaew, Konrawee Thananon, Worrapoj Oonanant

published 09 Mar 2022

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Identifying protein function and functional links based on large-scale co-occurrence patterns

Zohar Pasternak, Noam Chapnik, Roy Yosef, Naama M. Kopelman, Edouard Jurkevitch, Elad Segev

published 03 Mar 2022

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Similarities between bacterial GAD and human GAD65: Implications in gut mediated autoimmune type 1 diabetes

Suhana Bedi, Tiffany M. Richardson, Baofeng Jia, Hadeel Saab, Fiona S. L. Brinkman, Monica Westley

published 23 Feb 2022

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In silico, in vitro and in vivo safety evaluation of Limosilactobacillus reuteri strains ATCC PTA-126787 & ATCC PTA-126788 for potential probiotic applications

Dharanesh Gangaiah, Shrinivasrao P. Mane, Nilesh R. Tawari, Nallakannu Lakshmanan, Valerie Ryan, Alyssa Volland, Dwi Susanti, Milind Patel, Abraham Abouzeid, Emily B. Helmes, Arvind Kumar

published 26 Jan 2022

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Multilocus sequence based identification and adaptational strategies of Pseudomonas sp. from the supraglacial site of Sikkim Himalaya

Srijana Mukhia, Anil Kumar, Poonam Kumari, Rakshak Kumar, Sanjay Kumar

published 24 Jan 2022

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Machine learning classification of trajectories from molecular dynamics simulations of chromosome segregation

David Geisel, Peter Lenz

published 21 Jan 2022

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DeLUCS: Deep learning for unsupervised clustering of DNA sequences

Pablo Millán Arias, Fatemeh Alipour, Kathleen A. Hill, Lila Kari

published 21 Jan 2022

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Mycobacterial MMAR_2193 catalyzes O-methylation of diverse polyketide cores

Gorkha Raj Giri, Priti Saxena

published 05 Jan 2022

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Molecular subtyping for source tracking of Escherichia coli using core genome multilocus sequence typing at a food manufacturing plant

Ayaka Nakamura, Hajime Takahashi, Maki Arai, Tomoki Tsuchiya, Shohei Wada, Yuki Fujimoto, Yoshiomi Shimabara, Takashi Kuda, Bon Kimura

published 23 Dec 2021

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A machine learning-based typing scheme refinement for Listeria monocytogenes core genome multilocus sequence typing with high discriminatory power for common source outbreak tracking

Yen-Yi Liu, Chih-Chieh Chen

published 19 Nov 2021

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