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Bacterial genetics

High Throughput Sequencing and Proteomics to Identify Immunogenic Proteins of a New Pathogen: The Dirty Genome Approach

Gilbert Greub, Carole Kebbi-Beghdadi, [ ... ], Didier Raoult

Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

Daniel R. Zerbino, Gayle K. McEwen, Elliott H. Margulies, Ewan Birney

Antigen Diversity in the Parasitic Bacterium Anaplasma phagocytophilum Arises from Selectively-Represented, Spatially Clustered Functional Pseudogenes

Janet E. Foley, Nathan C. Nieto, Anthony Barbet, Patrick Foley

Examination of Genome Homogeneity in Prokaryotes Using Genomic Signatures

Jon Bohlin, Eystein Skjerve

The Association of Virulence Factors with Genomic Islands

Shannan J. Ho Sui, Amber Fedynak, [ ... ], Fiona S. L. Brinkman

Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System

Konstantinos Mavromatis, Ken Chu, [ ... ], Nikos C. Kyrpides

Genome Sequence of the Versatile Fish Pathogen Edwardsiella tarda Provides Insights into its Adaptation to Broad Host Ranges and Intracellular Niches

Qiyao Wang, Minjun Yang, [ ... ], Yuanxing Zhang

Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli

Alfredo Mendoza-Vargas, Leticia Olvera, [ ... ], Enrique Morett

Functional Dissection of Streptococcus pyogenes M5 Protein: the Hypervariable Region is Essential for Virulence

Johan Waldemarsson, Margaretha Stålhammar-Carlemalm, [ ... ], Gunnar Lindahl

Optimizing Taq Polymerase Concentration for Improved Signal-to-Noise in the Broad Range Detection of Low Abundance Bacteria

Rudolph Spangler, Noel L. Goddard, David S. Thaler

The dif/Xer Recombination Systems in Proteobacteria

Christophe Carnoy, Claude-Alain Roten

A Differential Effect of E. coli Toxin-Antitoxin Systems on Cell Death in Liquid Media and Biofilm Formation

Ilana Kolodkin-Gal, Reut Verdiger, Ayalla Shlosberg-Fedida, Hanna Engelberg-Kulka

Resolution of Joint Molecules by RuvABC and RecG Following Cleavage of the Escherichia coli Chromosome by EcoKI

Laura Wardrope, Ewa Okely, David Leach

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