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Bacterial genetics

Identification and initial characterization of Hfq-associated sRNAs in Histophilus somni strain 2336

Bindu Subhadra, Dianjun Cao, Roderick Jensen, Clayton Caswell, Thomas J. Inzana

published 23 May 2023

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Large genomic deletions delineate Mycobacterium tuberculosis L4 sublineages in South American countries

Andres Baena, Felipe Cabarcas, Juan C. Ocampo, Luis F. Barrera, Juan F. Alzate

published 19 May 2023

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Isolation and identification of hyaluronan-degrading bacteria from Japanese fecal microbiota

Hazuki Akazawa, Itsuko Fukuda, Haruna Kaneda, Shoichi Yoda, Mamoru Kimura, Ryohei Nomoto, Shuji Ueda, Yasuhito Shirai, Ro Osawa

published 17 May 2023

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Isolation of strains and their genome sequencing to analyze the mating system of Ophiocordyceps robertsii

Melvin Xu, Nathan A. Ashley, Niloofar Vaghefi, Ian Wilkinson, Alexander Idnurm

published 02 May 2023

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Phylogenetic trees of closely related bacterial species and subspecies based on frequencies of short nucleotide sequences

Yoshio Nakano, Yusaku Domon, Kenji Yamagishi

published 20 Apr 2023

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Genomic diversity in Fructobacillus spp. isolated from fructose-rich niches

Florencia Mohamed, Luciana G. Ruiz Rodriguez, Azul Zorzoli, Helge C. Dorfmueller, Raúl R. Raya, Fernanda Mozzi

published 16 Feb 2023

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GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification

Jared Lumpe, Lynette Gumbleton, Andrew Gorzalski, Kevin Libuit, Vici Varghese, Tyler Lloyd, Farid Tadros, Tyler Arsimendi, Eileen Wagner, Craig Stephens, Joel Sevinsky, David Hess, Mark Pandori

published 16 Feb 2023

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Insights into the genome of Methylobacterium sp. NMS14P, a novel bacterium for growth promotion of maize, chili, and sugarcane

Jiraporn Jirakkakul, Ahmad Nuruddin Khoiri, Thanawat Duangfoo, Sudarat Dulsawat, Sawannee Sutheeworapong, Kantiya Petsong, Songsak Wattanachaisaereekul, Prasobsook Paenkaew, Anuwat Tachaleat, Supapon Cheevadhanarak, Peerada Prommeenate

published 07 Feb 2023

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The inside scoop: Comparative genomics of two intranuclear bacteria, “Candidatus Berkiella cookevillensis” and “Candidatus Berkiella aquae”

Destaalem T. Kidane, Yohannes T. Mehari, Forest C. Rice, Brock A. Arivett, John H. Gunderson, Anthony L. Farone, Mary B. Farone

published 30 Dec 2022

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Classification of bacterial plasmid and chromosome derived sequences using machine learning

Xiaohui Zou, Marcus Nguyen, Jamie Overbeek, Bin Cao, James J. Davis

published 16 Dec 2022

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Parallel engineering of environmental bacteria and performance over years under jungle-simulated conditions

Yonatan Chemla, Yuval Dorfan, Adi Yannai, Dechuan Meng, Paul Cao, Sarah Glaven, D. Benjamin Gordon, Johann Elbaz, Christopher A. Voigt

published 14 Dec 2022

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Optimized conditions for Listeria, Salmonella and Escherichia whole genome sequencing using the Illumina iSeq100 platform with point-and-click bioinformatic analysis

Sonsiray Alvarez Narvaez, Zhenyu Shen, Lifang Yan, Brianna L. S. Stenger, Laura B. Goodman, Ailam Lim, Ruth H. Nissly, Meera Surendran Nair, Shuping Zhang, Susan Sanchez

published 30 Nov 2022

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Cas9-mediated endogenous plasmid loss in Borrelia burgdorferi

Constantin N. Takacs, Yuko Nakajima, James E. Haber, Christine Jacobs-Wagner

published 28 Nov 2022

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