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Bacterial genetics

Pangenome and genomic signatures linked to the dominance of the lineage-4 of Mycobacterium tuberculosis isolated from extrapulmonary tuberculosis patients in western Ethiopia

Basha Chekesa, Harinder Singh, Norberto Gonzalez-Juarbe, Sanjay Vashee, Rosana Wiscovitch-Russo, Christopher L. Dupont, Musse Girma, Oudessa Kerro, Balako Gumi, Gobena Ameni

published 25 Jul 2024

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Comparative genomics of Tn6411 transposons carrying the bla_IMP-1 gene in Pseudomonas aeruginosa

Lin Zheng, Zixian Wang, Jingyi Guo, Jiayao Guan, Gejin Lu, Jie Jing, Shiwen Sun, Yang Sun, Xue Ji, Bowen Jiang, Yongjie Wang, Chuanfang Zhao, Lingwei Zhu, Xuejun Guo

published 09 Jul 2024

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Evaluation of a multiplex-qPCR for paediatric pleural empyema—An observational study in hospitalised children

Jonathan Jacobson, Loraine Fabri, Joshua Osowicki, Shivanthan Shanthikumar, Anna-Maria Costa, Belinda Ortika, Ashleigh Wee-Hee, Michelle Pragassen, Cassandra Gatt, Gena Gonis, Cattram Nguyen, Thomas Rozen, Warwick Teague, Jim Buttery, Vanessa Clifford, Kim Mulholland, Andrew Steer, Sarath Ranganathan, Andrew Daley, Eileen Dunne, Catherine Satzke

published 25 Jun 2024

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Molecular basis of the persistence of chloramphenicol resistance among Escherichia coli and Salmonella spp. from pigs, pork and humans in Thailand

Jiratchaya Puangseree, Rangsiya Prathan, Songsak Srisanga, Rungtip Chuanchuen

published 24 May 2024

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Investigating the degradation potential of microbial consortia for perfluorooctane sulfonate through a functional "top-down" screening approach

Yu Liang, Anzhou Ma

published 17 May 2024

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First detection and characterization of mcr-1 colistin resistant E. coli from wild rat in Bangladesh

Md. Wohab Ali, Susmita Karmakar, Kishor Sosmith Utsho, Ajran Kabir, Mohammad Arif, Md. Shafiqul Islam, Md. Tanvir Rahman, Jayedul Hassan

published 14 May 2024

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Comprehensive analysis of genomic variation, pan-genome and biosynthetic potential of Corynebacterium glutamicum strains

Md. Shahedur Rahman, Md. Ebrahim Khalil Shimul, Md. Anowar Khasru Parvez

published 08 May 2024

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Shotgun metagenomic analysis of saliva microbiome suggests Mogibacterium as a factor associated with chronic bacterial osteomyelitis

Hiroko Yahara, Souichi Yanamoto, Miho Takahashi, Yuji Hamada, Takuya Asaka, Yoshimasa Kitagawa, Kuniyasu Moridera, Kazuma Noguchi, Yutaka Maruoka, Koji Yahara

published 06 May 2024

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Investigating the nature of prokaryotic genomic island locations within a genome

Reem Aldaihani, Lenwood S. Heath

published 02 May 2024

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Geographical distribution of mobile genetic elements in microbial communities along the Yucatan coast

Francisco Guillén-Chable, Johnny Omar Valdez Iuit, Luis Alejandro Avila Castro, Carlos Rosas, Enrique Merino, Zuemy Rodríguez-Escamilla, Mario Alberto Martínez-Núñez

published 29 Apr 2024

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The microbiome of a Pacific moon jellyfish Aurelia coerulea

Aki H. Ohdera, Maille Mansbridge, Matthew Wang, Paulina Naydenkov, Bishoy Kamel, Lea Goentoro

published 18 Apr 2024

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Phylogenomic analyses and comparative genomics of Pseudomonas syringae associated with almond (Prunus dulcis) in California

Tawanda E. Maguvu, Rosa J. Frias, Alejandro I. Hernandez-Rosas, Brent A. Holtz, Franz J. A. Niederholzer, Roger A. Duncan, Mohammad A. Yaghmour, Catherine M. Culumber, Phoebe E. Gordon, Flavia C. F. Vieira, Philippe E. Rolshausen, James E. Adaskaveg, Lindsey P. Burbank, Steven E. Lindow, Florent P. Trouillas

published 11 Apr 2024

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A fast comparative genome browser for diverse bacteria and archaea

Morgan N. Price, Adam P. Arkin

published 09 Apr 2024

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