Bacterial genetics

Whole genome sequencing, characterization and analysis of coronene degrading bacterial strain Halomonas elongata

Thasneema Rafic, Mohammed Alarawi, Omer Salem Alkhnbashi, Assad Al-Thukair, Ajibola H. Okeyode, Karthikeyan G, Alexis Nzila

published 19 Nov 2025

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Silent spread of mcr-9 in ESBL-producing Enterobacteriaceae clinical isolates, Jimma, Ethiopia

Tsegaye Sewunet, Mohammad Razavi, Chaitanya Tellapragada, Christian G. Giske

published 18 Nov 2025

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ReadSeeker: A DNABERT based de-novo read-level gene predictor

Ben Wulf, Piotr Wojciech Dabrowski

published 13 Nov 2025

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Genomic characteristics of Lacticaseibacillus rhamnosus strains isolated from blood

Piotr Jarocki, Jan Sadurski, Martyna Siuda, Mateusz Romanowicz, Jacek Panek, Magdalena Frąc, Adam Waśko

published 31 Oct 2025

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Whole genome sequence of multidrug-resistant Staphylococcus haemolyticus and Enterococcus faecalis isolates from public gymnasium equipment reveals evolving infection potential and resistance

Goutam Banerjee, Pratik Banerjee

published 29 Oct 2025

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The genome of Gallaecimonas pentaromativorans strain 10A, isolated from a Pacific oyster, sheds light on an environmentally widespread genus with remarkable metabolic potential

Yasmine Gouin, Adam Wilcockson, Amy M. Chan, Curtis A. Suttle, Kevin Xu Zhong

published 21 Oct 2025

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Unraveling the genomic complexity of secretion systems in the most virulent Xanthomonas arboricola pathovars

Sara Cuesta-Morrondo, Jerson Garita-Cambronero, Jaime Cubero

published 19 Sep 2025

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Comprehensive genomic analysis of Xenorhabdus bovienii strain MEL2.2

Wipanee Meesil, Liam K. R. Sharkey, Sacha J. Pidot, Aunchalee Thanwisai

published 25 Aug 2025

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Investigation of mobile genetic elements and their association with antibiotic resistance genes in clinical pathogens worldwide

Markus H. K. Johansson, Thomas N. Petersen, Sidsel Nag, Timmie M. R. Lagermann, Laura E.K. Birkedahl, Silva Tafaj, Susan Bradbury, Peter Collignon, Denise Daley, Victorien Dougnon, Kafayath Fabiyi, Boubacar Coulibaly, Réné Dembélé, Natama Magloire, Isidore J. Ouindgueta, Zenat Z. Hossain, Anowara Begoum, Deyan Donchev, Mathew Diggle, LeeAnn Turnbull, Simon Lévesque, Livia Berlinger, Kirstine K. Søgaard, Paula D. Guevara, Carolina Duarte, Panagiota Maikanti, Jana Amlerova, Pavel Drevinek, Jan Tkadlec, Milica Dilas, Achim Kaasch, Henrik T. Westh, Mohamed A. Bachtarzi, Wahiba Amhis, Carolina E.S. Salazar, José E. Villacis, Mária A. D. Lúzon, Dàmaris B. Palau, Claire Duployez, Maxime Paluche, Solomon Asante-Sefa, Mie Møller, Margaret Ip, Ivana Mareković, Agnes Pál-Sonnevend, Clementiza E. Cocuzza, Asta Dambrauskiene, Alexandre Macanze, Anelsio Cossa, Inácio Mandomando, Philip Nwajiobi-Princewill, Iruka N. Okeke, Aderemi O. Kehinde, Ini Adebiyi, Ifeoluwa Akintayo, Oluwafemi Popoola, Anthony Onipede, Anita Blomfeldt, Nora E. Nyquist, Kiri Bocker, James Ussher, Amjad Ali, Nimat Ullah, Habibullah Khan, Natalie W. Gustafson, Ikhlas Jarrar, Arif Al-Hamad, Viravarn Luvira, Wantana Paveenkittiporn, Irmak Baran, James C. L. Mwansa, Linda Sikakwa, Kaunda Yamba, Frank M. Aarestrup

published 18 Aug 2025

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Genome-driven insights into Bacillus safensis strain B7 as a seed coating agent for plant growth promotion and alleviation of biotic and abiotic stresses

Maissa Ben-Jabeur, Zayneb Kthiri, Salma Jallouli, Kalthoum Harbaoui, Zoubeir Chamekh, Sawsen Ayadi, Youssef Trifa, Walid Hamada

published 18 Aug 2025

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The porphyran degradation system is complete, phylogenetically and geographically diverse across the gut microbiota of East Asian populations

Laure Ségurel, Thirumalai Selvi Ulaganathan, Sophie Mathieu, Mélanie Loiodice, Laurent Poulet, Sophie Drouillard, Miroslaw Cygler, William Helbert

published 01 Aug 2025

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OpDetect: A convolutional and recurrent neural network classifier for precise and sensitive operon detection from RNA-seq data

Rezvan Karaji, Lourdes Peña-Castillo

published 01 Aug 2025

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Whole genome-based reclassification of several species of the genus Nonomuraea

Noureddine Bouras, Imen Nouioui, Guendouz Dif, Fawzia Chaabane Chaouch, Sherif S. Ebada

published 01 Jul 2025

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Bacterial genetics

Whole genome sequencing, characterization and analysis of coronene degrading bacterial strain Halomonas elongata

Silent spread of mcr-9 in ESBL-producing Enterobacteriaceae clinical isolates, Jimma, Ethiopia

ReadSeeker: A DNABERT based de-novo read-level gene predictor

Genomic characteristics of Lacticaseibacillus rhamnosus strains isolated from blood

Whole genome sequence of multidrug-resistant Staphylococcus haemolyticus and Enterococcus faecalis isolates from public gymnasium equipment reveals evolving infection potential and resistance

The genome of Gallaecimonas pentaromativorans strain 10A, isolated from a Pacific oyster, sheds light on an environmentally widespread genus with remarkable metabolic potential

Unraveling the genomic complexity of secretion systems in the most virulent Xanthomonas arboricola pathovars

Comprehensive genomic analysis of Xenorhabdus bovienii strain MEL2.2

Investigation of mobile genetic elements and their association with antibiotic resistance genes in clinical pathogens worldwide

Genome-driven insights into Bacillus safensis strain B7 as a seed coating agent for plant growth promotion and alleviation of biotic and abiotic stresses

The porphyran degradation system is complete, phylogenetically and geographically diverse across the gut microbiota of East Asian populations

OpDetect: A convolutional and recurrent neural network classifier for precise and sensitive operon detection from RNA-seq data

Whole genome-based reclassification of several species of the genus Nonomuraea

Bacterial genetics

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