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Evolutionary systematics

Clonal phylogenies inferred from bulk, single cell, and spatial transcriptomic analysis of epithelial cancers

Andrew Erickson, Sandy Figiel, Timothy Rajakumar, Srinivasa Rao, Wencheng Yin, Dimitrios Doultsinos, Anette Magnussen, Reema Singh, Ninu Poulose, Richard J. Bryant, Olivier Cussenot, Freddie C. Hamdy, Dan Woodcock, Ian G. Mills, Alastair D. Lamb

published 03 Jan 2025

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Whole genome sequences of nine Taylorella equigenitalis strains isolated in the Czech Republic between 1982–2021: Molecular dating suggests a common ancestor at the time of Roman Empire

Matěj Hrala, Petr Andrla, Juraj Bosák, Pavla Fedrová, Amir Mugutdinov, Renata Karpíšková, Kateřina Nedbalcová, Jitka Raichová, Martin Faldyna, Petr Hořín, David Šmajs

published 03 Jan 2025

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Comparative transcriptome analysis of albino northern snakehead (Channa argus) reveals its various collagen-related DEGs in caudal fin cells

Shixi Chen, Ning Li, Fardous Mohammad Safiul Azam, Li Ao, Na Li, Jianlan Wang, Yuanchao Zou, Rui Li, Zakaria Hossain Prodhan

published 31 Dec 2024

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Unveiling the endogenous CRISPR-Cas system in Pseudomonas aeruginosa PAO1

Javier Alejandro Delgado-Nungaray, Luis Joel Figueroa-Yáñez, Eire Reynaga-Delgado, Ana Montserrat Corona-España, Orfil Gonzalez-Reynoso

published 31 Dec 2024

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Characterization of Enterobacter phage vB_EcRAM-01, a new Pseudotevenvirus against Enterobacter cloacae, isolated in an urban river in Panama

Ednner E. Victoria-Blanco, Jean Pierre González-Gómez, Juan Raúl Medina-Sánchez, Alexander A. Martínez, Nohelia Castro del Campo, Cristóbal Chaidez-Quiroz, Jordi Querol-Audi, Alex Omar Martínez-Torres

published 31 Dec 2024

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From museum drawer to tree: Historical DNA phylogenomics clarifies the systematics of rare dung beetles (Coleoptera: Scarabaeinae) from museum collections

Fernando Lopes, Nicole Gunter, Conrad P. D. T. Gillett, Giulio Montanaro, Michele Rossini, Federica Losacco, Gimo M. Daniel, Nicolas Straube, Sergei Tarasov

published 31 Dec 2024

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Integrative use of DNA barcode and morphology reveal high level of diversity in the ornamental fish on the lower Amazon basin

Elciane Araújo de Freitas, Dayana Batista dos Santos, Charles Samuel Moraes Ferreira, Cárlison Silva-Oliveira, Grazielle Fernanda Evangelista-Gomes, Ivana Barbosa Veneza

published 30 Dec 2024

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Transcriptomic resources for Bagrada hilaris (Burmeister), a widespread invasive pest of Brassicales

Michael E. Sparks, David R. Nelson, Robert L. Harrison, Nicholas R. Larson, Daniel Kuhar, Ariela I. Haber, Sam D. Heraghty, Zarley Rebholz, Dorothea Tholl, Ian M. Grettenberger, Donald C. Weber, Dawn E. Gundersen-Rindal

published 27 Dec 2024

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Comparison of qPCR protocols for quantification of “Candidatus Saccharibacteria”, belonging to the Candidate Phyla Radiation, suggests that 23S rRNA is a better target than 16S rRNA

Stella Papaleo, Riccardo Nodari, Lodovico Sterzi, Enza D’Auria, Camilla Cattaneo, Giorgia Bettoni, Clara Bonaiti, Ella Pagliarini, Gianvincenzo Zuccotti, Simona Panelli, Francesco Comandatore

published 26 Dec 2024

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Recent range expansion and lineage idiosyncratic population structure of Liodessus diving beetles in the high Andes (Coleoptera: Dytiscidae, Bidessini)

Michael Balke, Tobias Mainda, Katja Neven, Lars Hendrich, Michael Steven Basantes, Carlos Prieto, Adrián Villastrigo

published 20 Dec 2024

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Species diversity in the new lamprey genus Occidentis, formerly classified as western North American ‘Lampetra’

Kellie J. Carim, Grace Auringer, Margaret F. Docker, Claude B. Renaud, Benjamin J. Clemens, Monica R. Blanchard, Christina Parker, Michael K. Young

published 19 Dec 2024

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Evolution of two metabolic genes involved in nucleotide and amino acid metabolism in Pseudomonas aeruginosa

Yutong Wu, Yuqi Shi, Xiaohui Liang

published 17 Dec 2024

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Molecular and morphological investigations of two new species in Qinia and Cymbella (Bacillariophyceae: Cymbellales) from China

Jingshen Li, Andrei Mironov, Yutong Jiang, Jinyan Liang, John P. Kociolek, Yevhen Maltsev, Yawen Fan, Yan Liu, Maxim Kulikovskiy

published 13 Dec 2024

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