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Optimized collagenase biosynthesis (Bacillus siamensis strain Z1) and its application in collagen hydrolysate-mediated silver and zinc oxide nanoparticles synthesis and characterization with antibacterial, antioxidant and cytotoxic activities

Abstract

Globally, environmental pollution caused by resilient protein like collagen is escalating due to inefficient disposal practices. Accumulation of collagen waste poses ecological threat, necessitating management strategies. Current study discloses collagenolytic bacterium, Bacillus siamensis strain Z1, isolated from marine water (Goa) demonstrating collagen breakdown and inducing collagenase biosynthesis. Production kinetics revealed optimal collagenase production (4.55 U/mL) on 2nd day with a protein content of 0.69 mg/mL. Influence of physiochemical parameters, including inoculum size, metal ions, carbon and nitrogen sources, pH and temperature on collagenase yield was optimized achieving 17.93 folds enhancement by central composite design. Silver (AgNP) and Zinc oxide (ZnONP) nanoparticles were biosynthesized using collagen hydrolysate derived from marine collagen through collagenase action and characterized using UV-Visible spectroscopy, Fourier Transform Infrared Spectroscopy, X-ray Diffraction, Scanning Electron Microscopy with Energy Dispersive X-ray, Thermogravimetric Analysis and Atomic Force Microscopy elucidated thermostability, structure and surface characteristics. Antibacterial effect of nanoparticles was observed against B. cereus and E. coli. AgNP and ZnONP demonstrated antioxidant properties assessed by ABTS and DPPH assays. AgNP and ZnONP exhibited cytotoxicity on MCF-7 breast cancer cell lines, with IC50 values 8.87 µg/mL and 25.21 µg/mL respectively. The study highlights biotechnological potential of collagenase in generating bioactive products for therapeutical and biomedical advancements.

1. Introduction

Fishery resources are one of the substantial component of economy and the increasing global consumption of marine food has led to the accumulation of massive amount of fish waste creating environmental concern due to improper disposal method [1]. The fish processing business generates a substantial quantity (varying from over 25% to 70%) of by-products, including viscera, heads, scales, bones, and other materials, which constitute a considerable collagen waste that should be effectively utilized. The problem of fishery discards, which are highly perishable due to their high collagen content, is a growing concern. Using fishery discards as a secondary raw material could be a resource-efficient solution [2].

Collagenase is a proteolytic enzyme that specifically breaks down different kinds of collagen. Collagenases are primarily derived from microorganisms, animals and plants, each exhibiting distinct substrate selectivity. Microbial collagenases (EC 3.4.24.3) exhibit broad substrate versatility, enabling them to degrade both water-soluble and water-insoluble collagen forms by cleaving X-Gly peptide bonds within triple helical regions of the collagen molecule [3]. Marine derived collagenases are particularly effective in hydrolyzing collagen from marine organisms, notably fish, and have garnered attention for their remarkable properties [4]. Microbial collagenases include matrix metalloproteinases (MMPs) and U32 peptidases which are capable of degrading various collagen types [5].

The enzyme binds to the helical regions of collagen and disrupts the triple-helical structure, thereby preventing direct strand cleavage. This process fragments collagen fibers into smaller, more flexible units compared to the native triple-helical form. Continued enzymatic action further degrades these fragments into shorter peptides and ultimately into individual amino acids [6]. Limited research has been undertaken on collagenase mechanism in Bacillus species, but with matrix metalloproteinase (MMP) collagenase of Clostridium histolyticum it was mentioned the catalytic domain of MMP help in unwinding and cleaving, while it seems that correct orientation and partial destabilization of collagen are the functions of the C-terminal hemopexin-like domain [7,8]

Collagenase from Bacillus siamensis strain Z1 has been molecularly and bioinformatically classified within the peptidase U32 family, a group of bacterial proteases recognized for collagenolytic activity rather than the canonical vertebrate MMP classes. Genomic sequence analysis of the cloned Z1 collagenase reveals presence of U32 family domains and strong similarity to other microbial U32 peptidases, confirming its phylogenetic placement and functional capacity as a bacterial collagenase. These U32 collagenases, although annotated under broad microbial collagenase category lack the canonical zinc-binding catalytic motif of classical MMPs and instead utilize distinct active site architecture and catalytic residues characteristic of bacterial peptidases to hydrolyze collagen substrates. Functionally, the recombinant Z1 collagenase has exhibited robust activity against collagen and gelatin substrates, indicating broad substrate specificity and molecular docking with Alaska pollock hydroxyproline-containing marine collagen peptide yielded high binding affinity of −12.7 kcal/mol, underscoring its capacity to engage triple-helical marine collagen motifs [9]

Mechanistically, the U32 microbial collagenase from Bacillus siamensis Z1 initiate degradation by binding to the native triple-helical collagen structure and introducing endopeptidic cleavages at Gly-rich sites within the Gly-X-Y repeating units, a strategy that disrupts the stable helical conformation and generates shorter peptide fragments susceptible to further proteolysis. This mechanism aligns with established bacterial collagenolytic pathways, where cleavage within the collagen triple helix induces structural destabilization and subsequent fibre breakdown. In-silico binding to marine collagen peptides supports a model in which substrate recognition and local helix destabilization precede catalytic hydrolysis, enabling efficient degradation of marine collagen [10].

Gene diversity of collagenases is largely related to the evolutionary relationship of the three bacterial groups: Clostridium, Vibrio, and Porphyromonas. The former two groups include species like Clostridium histolyticum, Clostridium perfringens, Vibrio alginolyticus and Vibrio parahaemolyticus while the latter two include Porphyromonas gingivalis and Porphyromonas endodontalis. Collagenases are synthesized by various microbial strains falling to different genus of Bacillus, Streptomyces, Aspergillus and Penicillium and most of the these species are isolated from soil, water and waste dumping sites [11]. Recent advances in collagenase production have explored a variety of microbial and biotechnological approaches. For example, industrial by-product-based solid state fermentation was used to produce collagenase from Aspergillus serratalhadensis with significant activity and purification characterization reported by Lino et al., [12]. Recently, a thermostable collagenase was derived from actinomycete strain Streptomyces scabies that was isolated from rhizospheric soil collected near hot spring in Saudi Arabia [13]. In addition, high level extracellular expression systems for collagenase ColH in Bacillus subtilis have been developed, achieving enhanced activity suitable for industrial and cell extraction applications [14]. A recent, research by Liu et al., [15] has highlighted the potential of Bacillus velezensis LZ676 to completely hydrolyze cowhide collagen, producing a peptide-rich mixture with significant antioxidant and antibacterial activity and demonstrating the strain’s high collagenase production capacity in fermentation context. These recent studies underscore the diversity of collagenase production strategies and emphasize the significance of collagenase as biologically and industrially important enzyme.

Collagenase has gained prominence owing to its diverse uses in different areas. Primarily, collagenase is utilized in the biomedical and pharmaceutical industries in damaged tissue repair, placental therapy and medical interventions. Furthermore, collagenase serves as substantial part in the isolation of cells from tissues for research purposes, making it indispensable in cell culture and regenerative medicine. Meanwhile the worldwide collagen market was worth ∼ 4.7 billion USD in 2020, with ∼ 80% of collagen and its byproducts utilised in food, beverage (∼ 32%) and health management (∼ 48%). The global collagen market is projected to reach ∼ $7 billion by 2027. The hydrolysed form of collagen is collagen hydrolysate and it has many positive effects when taken orally, including enhancing skin health and reduces heart problem. The collagen hydrolysate has allowed for the identification and characterisation of several collagen peptides with distinct biological activity [16]. Small polypeptides and collagen hydrolysis peptides are water – soluble and easy to integrate into cosmetic formulations because they can enter deeper skin layers and rejuvenate skin characteristics. Fish waste has been employed as raw source for preparation pertaining to collagen hydrolysates [17]. It is suggested that collagen hydrolysate/peptides have potent antioxidant, antimicrobial, antihypertensive, cholesterol lowering ability, anticancer, antioxidant, anti-aging, hypoglycemic activities, decreasing join pain associated with osteoarthritis [18,19]. To achieve elevated collagenase yields, selecting an appropriate cultivation medium is essential. Therefore, various approaches are utilized in bioprocessing, including conventional one factor at a time and different statistical designs like, Plackett-Burman design and optimization mode like response surface methodology [20].

Nanotechnology has arisen as a transformative tool, significantly advancing and reshaping various scientific disciplines. Nanoparticles are tiny particles ranging approximately from 1 to 100 nm and having greater surface with respect to volume ratio and quantum effects, giving them distinct chemical, physical and biological properties compared to bulk materials [21]. Nanoparticles have recently gained attention as potentially useful tool in both biosciences and material sciences, including medicine, cosmetics and diagnostics. Imaging of nanomaterials at atomic resolution with advanced techniques has also boosted the exponential rise and interest in nanotechnology [22]. Green Nanotechnology is an emerging area of research that explores the use of biological systems, such as living cells or bio-compounds (plant extracts, microbes, enzymes and protein rich hydrolysates) for the synthesis of nanoparticles. This approach is gaining prominence across various sectors including pharmaceuticals, nuclear science, energy, electronics and biotechnology. By emphasizing the reduction of toxic chemical waste and promoting the use of environmentally safe practices, green nanotechnology aims to deliver economic, social health and ecological advantages, grounded in the principles of eco-friendly [23]. Microorganisms, owing to their nanoscale dimensions and exceptional properties, are considered to be manufacturing powerhouses functioning at the nanoscale level. The bacterium can accumulate and eliminate toxic metals because it contains several reductase enzymes that can help turn metal salts into nanoparticles. Their utilization as versatile bio factories showcase’s a promising future where progress and eco-consciousness fuel a sustainable tech transformation [24]. The collagen hydrolysate produced from Bacillus siamensis collagenase offers a highly effective biogenic platform for the synthesis of metal and metal oxide nanoparticles due to their rich assemblage of functional groups and inherent biocompatibility. Marine collagen peptides contain free amino (-NH2), carboxyl (-COOH), and hydroxyl (-OH) groups that can act as electron donors to facilitate the reduction of metal ions and simultaneously serve as stabilizing/capping agents to control nanoparticle growth and prevent agglomeration, thus enabling uniform nanoparticle formation and enhanced colloidal stability [25]. Compared to intact collagen, enzymatic hydrolysis produces low-molecular weight peptides with increased solubility and exposed reactive side chains, which improve metal ion chelation and reduction kinetics under mild and eco-friendly reaction conditions as provided by collagenase hydrolysis [26]. The use of marine sources further augments biocompatibility and reduces immunogenic concerns relative to mammalian collagen, making them particularly attractive for biomedical nanomaterials [27]. Nanoparticles play key role in biotechnological applications like drug delivery, nanomedicine, formulations, cellular research, antimicrobial, antioxidant, bioavailability and agriculture [28,29].

The current study highlights the collagen degrading capability of newly isolated strain Bacillus siamensis strain Z1 from marine soil. Bioconversion of collagen was performed to enhance collagenase production that maximized through statistical optimization techniques, leading to the generation of biologically active collagen hydrolysate. Silver and zinc oxide nanoparticles was been formulated from collagen hydrolysates, demonstrating notable antimicrobial, antioxidant and anticancer potential. Comprehensive characterization of the synthesized nanoparticles was conducted using Fourier Transform Infrared Spectroscopy (FTIR), Scanning Electron Microscopy (SEM) – Energy Dispersive X-ray (EDX), X-ray Diffraction (XRD), Thermogravimetric Analysis (TGA) and Atomic Force Microscopy (AFM). Despite advancements, studies on statistical optimization and nanoparticle synthesis using collagen hydrolysate obtained via Bacillus siamensis derived collagenase remain sparse.

2. Materials and methods

2.1. Chemicals, cultures and mammalian cell lines

Necessary chemicals for present research have been acquired from Merck & Co. Inc. (USA) and Sigma-Aldrich Pvt. Ltd. (USA) which were of analytical chemistry grade. Pathogenic cultures utilised for antibacterial activity, namely Bacillus cereus NCIM 2217 and Escherichia coli MTCC 443, were acquired from NCIM (National Collection of Industrial Microorganisms), Pune, and MTCC (Microbial Type Culture Collection and Gene Bank), Chandigarh. Human breast cancer cell line MCF-7 (ATCC – HTB – 22) and L929 normal mouse fibroblast cell line were used for anticancer experiments. All cell culture experiments were performed using cell culture grade media and reagents under aseptic laboratory conditions. Standard reference bacterial strains obtained from NCIM and MTCC were revived and standardized to 0.5 McFarland turbidity. No specific permits were required for this study as and no activities involved protected species, restricted sites, or regulated procedures.

2.2. Isolation, screening and molecular identification

Marine water samples pertaining to regions of seashore in Goa were collected in an aseptic manner to investigate potential producers of collagenase by using spread plate method. Water samples were collected during the summer season, as seasonal variations are known to significantly influence microbial diversity and extracellular enzyme-producing potential in aquatic environments. 1 ml of water sample has been mixed with sterilized saline (10 mL). Prepared samples were incubated in nutrient broth and inoculated over a solid nutrient agar (NA) plate. Single purified colony grown were subcultured and exposed to primary screening using medium comprising (g/100 mL) NaCl 0.9; skimmed milk powder 1 and agar 2 at pH 7.0. The bacterial colonies displaying highest hydrolytic zones were selected following its verification for subsequent collagenolytic capability thereby growing in specific medium for screening that composed of (g/100 mL) yeast extract 0.1; K2HPO4 0.7; KH2PO4 0.2; MgSO4 0.01, citrate 0.05, agar 2% and marine collagen 0.3% was added to autoclaved media. Coomassie brilliant blue (CBB) R-250 mixture was applied to the plates, followed by destaining to visualize clear hydrolysis zone [30]. Among the tested cultures, strain Z1 exhibited the largest zone of clearance and was thus selected for further analysis. It was maintained on collagen agar slants at 4℃, while glycerol stock was preserved at −20℃ for prolonged use. The Z1 strain was subsequently utilized for advanced investigations, including molecular characterization.

The genomicidentity of the potential Z1 strain was conducted through 16S rRNA gene sequencing, in accordance to methodology previously described [31]. DNA extraction kit has been employed to isolate genomic DNA of 20 h old bacterial culture.

Specific primers, forward (27F) and reverse (1492R) have been adopted for amplification process (Veriti® 96-well Thermal Cycler, Applied Biosystems, USA). Amplification through PCR was carried out adopting the method described previously [31]. The reaction mixture is comprised of 25 µL of sterile deionised water, comprising 12.5 µL of Premix Taq, 0.5 µM of primer and about 1 µL of DNA. Amplified product was purified and sequenced (Genetic Analyser, Applied Biosystems, USA). Obtained sequence was matched with comparable homologous sequences available in EzBioCloud database. The dissimilarity matrix was determined by the Ribosomal Database Project (https://rdp.cme.msu.edu). Evolutionary relationship was generated through matching Z1 nucleotide sequence with similar sequences using the neigbour joining technique in MEGA6 software [32].

2.3. Kinetic profiling for collagenase activity in a collagen-fed bacterial culture

The kinetics of collagenase synthesis from isolated bacterium Bacillus siamensis strain Z1 was investigated by employing collagen as important substrate. The composition of collagenase production medium included (g/100 mL) marine collagen 0.3; yeast extract 0.2; citrate 0.4 and salt solution mixture. A study of fermentation dynamics was conducted throughout a duration of six days in an Erlenmeyer flask (250 mL) and a production medium volume of 100 mL. A culture of strain Z1 that was 20 h old was transferred into nutrient broth (NB) and then subjected to incubation at 37℃ for 16–18 h while being shaken continuously at 200 × g (Scigenic biotech, India). The inoculum was introduced to the autoclaved 100 mL production medium (pH 7.0) in an aseptic manner, and the incubation process was continued for 6 days at 37℃ and 200 × g. At every regular 24 hours interval, a hydrolysed sample (~ 5 mL) was collected and subjected for process of centrifugation (10,000 × g for 15 min at 4℃). In addition to serving as protein source and extracellular crude collagenase, the supernatant was utilized for the analysis of total protein and the collagenase assay [30]. Additional parameters like cell growth (OD at 660 nm) and residual substrate concentration (reducing sugars in mg/mL) were estimated utilizing standard glucose by the DNS (3,5-Dinitrosalicyclic acid) procedure as illustrated earlier [33]. Experiments have been performed in triplicate sets and results are expressed (mean ± SD).

2.4. Analytical procedures

2.4.1. Collagenase assay.

Reaction constituted of collagenase (1 mL) to marine fish collagen (1 mL) (10 mg/mL) that had been prepared in buffer containing Tris HCl buffer (50 mM) augmented with CaCl2 (4 mM), and adjusted to pH 7.5. Reaction was carried out at duration of 30 min with temperature set at 30℃ and was agitated in order to dissolve collagen. Reaction was subsequently terminated through add up of 0.1 M acetic acid (1 mL). Using the Ninhydrin method, the quantity of amino groups obtained after centrifugation that have been released from the collagen was measured at 600 nm absorbance. The quantification of collagenase activity was accomplished by determining the µmol of leucine equivalent min ⁻ ¹ml ⁻ ¹ [30].

2.4.2. Analysis of protein.

Using the stated procedure provided previously [33] an assessment was performed on total amount of protein present in collagenase. Bovine serum albumin was therefore utilized as standard and measured in mg. From the triplicate trials carried out, the data is stated as mean ± SD.

2.5. Influence of physicochemical variables on the synthesis of collagenase

The impact of significant physio chemical variables on collagenase production (U/mL) has been assessed. Influence with various physiochemical factors, like inoculum size (1–5%), metal ions (CaCO3 and FeSO4) at different concentrations (0.2, 0.5, 0.7 and 1.0 g/L), carbon sources (fructose, starch, maltose and lactose), nitrogen sources (Urea, ammonium sulfate and sodium nitrate), pH (4.0–10.0 using 1.0 N HCl and 1.0 N NaOH) and temperature (30–50℃) was evaluated for collagenase yield. Fermentation flasks underwent incubation for a period of 2 days with shaking at 200 × g. Collagenase activity as well as protein were analysed with method reported previously. Whole experiments were carried out three times [34,35].

2.6. Plackett-Burman design (PBD) to assess influential elements that impact the synthesis of collagenase

The impact of key medium parameters on collagenase production (U/mL) was examined using PBD. The design matrix was prepared with the help of the statistical software Minitab 17. Based on the preliminary findings acquired from earlier experiments, a PBD of 10 factors was designed to be carried out at two defined levels designated as high (+) and low (−1). A total of 12 investigational tests were been carried out in triads. Following components have been used in the experiment namely, Urea(X1), MgSO4(X2), Collagen(X3), Citrate(X4), Yeast extract(X5), CaCl2(X6), Maltose(X7), Peptone(X8), FeSO4(X9) and NH4SO4(X10). Conditions for the experimental included 2% inoculum size, 0.5 g/L metal ion mixture, pH 7.0 and 35℃ temperature for 2 days period under shaking (200 × g.). Table 1 reveals the design matrix, which included both the original and coded values of the variables, as well as investigational and envisaged yields (responses). Collagenase production (U/mL) is a measure related to response (yield). The variable Y represents response and is derived from the first order polynomial equation that was discussed priorly [36].

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Table 1. Plackett- Burman experimental matrix for screening key variables affecting collagenase synthesis.

https://doi.org/10.1371/journal.pone.0344482.t001

2.7. Response surface methodology (RSM)-based optimization of collagenase production

Further, demonstration of collagenase optimization was brought about by utilizing the statistical programme Minitab 17 with the central composite design technique of RSM. In a total of 13 experimental runs, the two components notably molasses (A) and peptone (B), were utilized at five distinct levels (–α, –1, 0, + 1 and +α). Designed study was performed under constrain of pH 7.0 and 35ºC for two days. In the experiment, specific levels were been set for various parameters, while all additional elements in the medium were kept consistent. Table 3 illustrates the central composite design (CCD) RSM design table, displaying the factors in both original and coded formats along with the resulting collagenase production levels (U/mL). The relationships between the encoded and actual values of these factors were determined based on the formula previously outlined [37]. Below equation (1) represents second-order polynomial quadratic equation, where Y is calculated mean response, β0 represents the intercept of the model, β1 and β2 denote the linear coefficients, β11 and β22 denote quadratic coefficients and β12 is coefficient of interaction.

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Table 3. CCD-RSM design matrix for significant parameters influencing collagenase synthesis.

https://doi.org/10.1371/journal.pone.0344482.t003

(1)

The response surface plot was used to describe the interaction that occurred between the contributing components. The analysis of variance (ANOVA) study provided a visual representation of the substantial elements of the model as well as the interrelation between factors. Fisher’s ‘F’ function and probability ‘p’ can be utilized to infer importance of obtained model. The co-efficient of determination R2 and adjusted R2 are two indicators that demonstrate the accuracy of the model. The results acquired were confirmed in triplicate under the conditions that were adjusted to be optimal.

2.8. Synthesis of nanoparticles composed of silver and zinc oxide using collagen hydrolysate

The collagen hydrolysate was obtained by enzymatic hydrolysis of marine collagen using collagenase from Bacillus siamensis strain Z1. The hydrolysis was carried out for 48 h at 37℃ and pH 8.0, followed by enzyme inactivation and centrifugation. The supernatant was collected and used for nanoparticle synthesis. Silver nanoparticles (AgNP) synthesis in addition to collagen hydrolysate was performed using prior described approach [38]. AgNPs were synthesized using 1: 9 (v/v) ratio of collagen hydrolysate to silver nitrate solutions (5mM, 10 mM and 50 mM), followed by continuous magnetic stirring for 30 min to ensure homogenous mixing. A 500 µL of collagen hydrolysate was combined with 4500 µL of silver nitrate and resulting solution was been subjected to incubation under the UV light with set temperature for at 35℃ for 30 min. Further, reactions mixture was heated by subjecting them to microwave radiation for a duration of 30 sec, resulting in a noticeable alteration in color to brown or brown-red. UV-Vis spectroscopic data was collected by optical density of the AgNP mixture that was produced. In order to dry the AgNP suspension, it was subjected through a procedure of the formation of sediments which was obtained by sedimentation at 10,000 × g for 20 min. For the purpose of further characterization, the dried AgNP were utilized.

The zinc oxide nanoparticles (ZnONP) synthesis at concentrations of 10 mM and 50 mM using collagen hydrolysate was performed using methodology described by [39,40]. The reaction mixture comprised of ratio of 700 µL of zinc acetate dihydrate and 300 µL of collagen hydrolysate in 7:3 (v/v) ratio. Obtained mixture has been incubated with temperature of 60℃ for period of 15 min, followed by an extra incubation period of 6 hours carried out at room temperature. The UV-Vis spectrophotometer has been employed to determine optical density of produced ZnONP. Collected suspension was subjected to sedimentation (10,000 × g for 20 min). The collected sediment was dried at 50℃ and dried ZnONP was utilized for subsequent characterization.

2.9. Nanoparticles analytical characterization

2.9.1. Fourier transform infrared spectroscopy (FTIR) profiling of nanoparticles.

Functional groups present in silver nanoparticles (AgNP) and zinc oxide nanoparticles (ZnONP) synthesized using collagen hydrolysate were studied using FTIR (Perkin Elmer FTIR1760 instrument), adopting procedure reported prior [41]. At first, potassium bromide (KBr) pellets were prepared by finely grinding the KBr and the sample, and then pressing the mixture into a transparent pellet. The FTIR spectra were noted over the span of 500–4000 cm ⁻ ¹ with a spectral resolution of 4 cm ⁻ ¹. This analysis was essential for identifying characteristic functional groups and validating promising bio-synthesis of nanoparticles with collagen hydrolysate.

2.9.2. Analysing nanoparticles using scanning electron microscopy (SEM) and energy dispersive X-ray (EDX).

Exterior morphology pertaining to synthesised AgNP and ZnONP with collagen hydrolysate have been determined using SEM-EDS (VEGA\TESCAN, USA) technique, consistent from other publications [42]. The synthesized nanoparticle samples were mounted over aluminium stubs in a suction and then sputter-coated with a gold coating. Exterior morphology was examined at different magnifications, and elemental compositions was analysed using EDX.

2.9.3. Analysis by X-Ray Diffraction (XRD).

XRD have been was employed for analyzing crystalline characteristics of formed AgNP and ZnONP using collagen hydrolysate. The analysis used an X’pert PRO P analytical diffractometer, functioning at 40 kV and 30 mA. Bragg angles (2θ) between 10° to 90° were captured using a scan speed of 10° min ⁻ ¹ [43].

2.9.4. Thermogravimetric analysis (TGA).

TGA have been used to evaluate thermal stability of AgNP and ZnONP prepared using collagen hydrolysate. Thermal behavior of each 5 mL nanoparticle suspension was examined by ramping the temperature from 25–800℃ under nitrogen using a 10ºC/min heating rate [44].

2.9.5. Atomic force microscopy (AFM) analysis.

Surface morphology and particle dimensions of the synthesized AgNPs and ZnONPs with collagen hydrolysate were analyzed using AFM (Bruker MM8). Nanoparticles generated and were sequentially subjected to sedimentation (5000 × g for 10 min) and obtained residue had been twice rinsed with deionised water following re-suspension. The samples were deposited onto a glass slide, evenly smeared, and then air dried before being scanned with AFM to obtain surface visuals [45].

2.10. Characteristics of collagen hydrolysate and nanoparticles from biological standpoint

2.10.1. Antibacterial activity.

In order to determine the antibacterial characteristics of collagen hydrolysate, AgNP (5 mM, 10 mM, and 50 mM), and ZnONP (10 mM and 50 mM), in-vitro assay was conducted by means of agar well diffusion process [46]. Bacillus cereus (Gram-positive) and Escherichia coli (Gram-negative) pathogenic cultures were assessed for antibacterial study. Cultures were cultivated in medium of Luria broth (LB) incubated with 37℃. Bacterial cultures that had been cultivated for 24 h were streaked on plates made of Luria agar (LA). 100 μL of collagen hydrolysate and nanoparticles respectively, were poured into wells that were made on plates. After plates had been allowed to diffuse the samples, the incubation process was maintained at 37℃ for a period of 24 h. The inhibition zone measured (mm) was used to gather information about samples repressive action. As a positive control, the standard cefixime (5 µg/mL) was adopted.

2.10.2. Determining free radical scavenging activity.

2.10.2.1. 2,2-azino-bis-3-ethylenebenzothiozoline-6-sulfonic acid (ABTS) assay

By using ABTS assay, antioxidant capacity pertaining to collagen hydrolyzate, AgNP (50 mM), and ZnONP (50 mM) were evaluated [46]. In order to acquire absorbance value of 0.75 at 734 nm, ABTS and potassium persulfate mixture that was necessary for experiment was made by incubating it in the dark for a period of eighteen hours and then diluting it appropriately. ABTS solution (200 µL) was combined with 100 µL of collagen hydrolyzate, AgNP, and ZnONP, correspondingly. Further, incubated at 30℃ defined for duration of 30 min. At a wavelength of 734 nm, the absorbance of the sample collected was assessed. The radical scavenging capacity of respective samples was recorded throughout a range of time periods ranging from 12–48 h, and reactive species inhibition was clarified using the equation that had been reported in the past [47]. As standard antioxidant Butylated hydroxytoluene (BHT) (100 µg/mL) was employed.

2.10.2.2.α, α-Diphenyl-β-picryl-hydroxyl (DPPH) scavenging assay

DPPH radical scavenging assessment was also used for validating samples antioxidant property, as was done in accordance with the approach that was used previously [46,48]. Reactions were performed using samples of collagen hydrolyzate, AgNP (50 mM), and ZnONP (50 mM) in a 30–150 µg/mL concentration range. The DPPH solution, which had a concentration of 0.135 mM, was formulated in ethanol. The reaction underwent an incubation process for 35 min at 30℃ in a dark environment. In order to determine the optical density, the wavelength of 517 nm was used and as standard ascorbic acid (1 mM) was utilized. The effectiveness of scavenging was determined by employing the equation reported earlier [49,50].

2.10.3. Cytolytic action.

The in-vitro 3-(4, 5-dimethylthiazol2-yl)− 2,5-diphenyltetrazolium bromide (MTT) procedure has been used to assess cytotoxic impact related to collagen hydrolyate, AgNP, and ZnONP sample on MCF-7 breast cancer cell lines and L-929 normal mammalian cell lines. Cells were cultured in DMEM supplemented with 10% fetal bovine serum and seeded into 96-well plates at a density of 5000 cells per well, followed by incubation at 37℃ in a humified atmosphere containing 5% CO2 for 24 h. Cells were then treated with various concentrations (3.125–100 µg/mL) of the test samples and incubated under the same conditions for 48 h. After treatment, the cells were washed with phosphate-buffered saline, and MTT solution (0.5 mg/mL) was added to each well, followed by incubation for 5 h at 37℃. The resulting formazan crystals were dissolved in dimethyl sulfoxide (DMSO), and absorbance was measured at 570 nm using microplate reader. Untreated cells served as the control (100% cell viability), and cell viability (%) was calculated relative to the control. Doxorubicin was used as standard reference drug. All experimental trials has been commenced in triplicate [51]

2.11. Statistical analysis

All tests and sample analyses were conducted in triplicate trials. The data are shown as mean ± standard deviation (SD). The IC50 values were estimated by linear interpolation between concentrations corresponding to inhibition values immediately above and below 50%. Error bars shown in images represent the standard deviation, determined using Microsoft Excel tools.

3. Results and discussion

3.1. Isolation and identification of collagenolytic bacterium

This research focused on isolation of potential collagenase producer microbes from marine water of Goa. The isolation of efficient collagenase-producing strains during the summer season supports previous reports that warmer environmental conditions enhance proteolytic enzyme activity and the prevalence of enzyme producing micro-organisms [52]. Bacterial cultures were obtained using spread plate method and pure colonies were isolated on nutrient agar medium. A novel strain Z1 exhibited substantial collagenase activity based on both preliminary and secondary screenings. Z1 demonstrated growth on skimmed milk agar (preliminary screening medium) (S1a in S1 Fig) and collagen agar (secondary screening medium) (S1b S1 Fig). The strain produced the largest zone of hydrolysis with index of 4.5 (S1 Fig) and was confirmed as promising collagenolytic strain. The elected bacterial strain was characterized and confirmed through 16S rRNA gene sequencing and evolutionary tree analysis. The phylogenetic tree was generated employing neighbor-joining technique using MEGA6 software. Fig 1 illustrates evolutionary lineage among the Z1 strain and similarly related homologous gene sequences retrieved from the Gene Bank database (NCBI). Based on phylogenetic analysis, Z1 strain was identified as the species Bacillus siamensis. The identified bacterial strain was classified as Bacillus siamensis strain Z1. The nucleotide sequence of the discovered train Z1 was 1508 bp and was submitted to the NCBI GenBank database, and published under accession number OR054215. Further research was conducted with the Bacillus siamensis strain Z1. Dunlap et al., [53] also reported Bacillus vanillea’ XY18, a vanilla aroma compound producer, was compared to its closest relative, Bacillus siamensis KCTC 13613T. The draft genome showed minor differences, suggesting high similarity. A comprehensive characterization confirmed the close clustering, lead to reclassify it as Bacillus siamensis heterotypic synonym. Heo et al., [54], showed Bacillus siamensis strain B28 genome contained genes responsible for the synthesis of 8 vital amino acids included γ-aminobutyric acid, branched-chain fatty acids, subtilisin and γ-glutamyltransferase. The genes responsible in production of uracil, lipoteichoic acid, gluthione and other enzyme that scavenge reactive oxygen species also existed and the strain displayed susceptibility to eight drugs and also demonstrated antibacterial efficacy over seven foodborne pathogens. Researchers have identified several collagen hydrolysing bacterial strains isolated from various sources and some of them are mentioned here. Serine proteolytic collagenase from Bacillus sp. MO-1 possessed activity towards type I and IV collagen and gelatin [55]. A serine collagenase produced by thermophilic actinomycete strain Thermoactinomyces sp. 21E isolated from Bulgarian soil possessed thermostability [56]. A plant cysteine protease GP2 from ginger rhizomes (Zingiber officinale) exhibited potentiality in collagen hydrolysis and can be an alternative to papain in food industry [57].

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Fig 1. Phylogenetic tree utilizing the neighbour joining technique based on the 16S rRNA gene sequences of isolated bacterial strain Z1.

https://doi.org/10.1371/journal.pone.0344482.g001

A bacterial strain NW4327, that is major pathogen of the Great Barrier Reef sponge Rhopaloeidesodorabile, was found to produce collagenase and sponges that were contaminated with strain NW4327 had significant tissue necrosis, with bacteria detected actively tunnelling through the collagenous spongin fibres [58]. A metalloprotease fungi Rhizoctonia solani collected and isolated from laboratory produced extracellular collagenase [59]. Bacteria producing collagenase identified to be Chryseobacterium contaminans was isolated from soil of slaughter house [60]. Similarly, an extracellular collagenase was produced by Bacillus pumilus Col-J [11].

3.2. Collagenase production kinetics

The kinetics of collagenase production was investigated using the Bacillus siamensis strain Z1, and utilizing marine collagen as the raw energy source and glucose as the main carbon supply over a defined period of 6 days. The analysis encompassed collagenase production, total protein, cell biomass and residual substrate as illustrated in Fig 2A. Glucose intake decreased from 1% to 0.29% to achieve maximal cell biomass (0.97) under duration of six days. The collagenase kinetics profile indicated the collagenase yield began slowly on 1st day (2.89 U/mL) and progressively rised, reaching a peak of 4.55 U/mL on the 2nd day and on that day the total protein was found to be at its peak (0.69 mg/mL). Consequently, the 2nd day was determined to be the optimal duration for collagenase synthesis based on the production kinetics. Additionally, other variables were examined with the harvesting time of the collagenase as on 2nd day. Microbial collagenase is an extracellular enzyme, and so it is secreted in culture medium. The production of collagenase commonly depends on the availability of collagen concentration. The glucose effect might take place at elevated collagen levels in collagen rich substrates, leading to reduction in enzymatic activity. Literature reports suggest that the degradation of collagen is facilitated by a combination of enzymatic reactions involving collagenase, matrix metalloproteinases and gelatinase. Typically, collagen hydrolysis involves cleavage of peptide bonds. The efficient degradation of collagen by the isolated strain Z1 highlights its potential in managing collagen rich waste from food industries. Additionally, the conversion of insoluble collagen into soluble peptides attributed to isolated strain, highlights its potentiality in food, pharmaceutical and cosmetic industries. Several others described similar profiles of collagenase production. The examined production profile aligns with prior findings. The duration of collagenase synthesis varied from 2 to 5 days or longer, depending on microbial culture. [61], reported highest collagenase production on 3rd day by Trichosporon sp. strain 7V and a maximum collagenase activity of 0.173 U/mL with 2.21 mg/mL of cell mass was reported from Pseudomonas sp [62]. Collagenase producer from Penicillium genus showed a sharp increase in enzyme activity at 96 h and further reached maximum activity after 126 h and then the activity gradually declined which might be due to microorganism undergoing a period of adaptation when exposed to media that consisted solely of salts and gelatin or the nutrients in medium might have become depleted [63]. A study by Lima et al., [64] showed that Penicillium aurantiogriseum URM4622 grew rapidly, reaching a highest biomass after 48 h. In consent to current study, [65], reported production of collagenase from Penicillium species using collagen type I as substrate. [59] reported maximal collagenase activity by R. solani at 108 hr.

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Fig 2. Collagenase production kinetics and effect of physio-chemical factors on collagenase production (A) production kinetics, (B) inoculum size, (C) effect of metal ions, (D) effect of carbon sources, (E) effect of nitrogen sources, (F) effect of pH and (G) effect of temperature.

The data values are the average of three replicates, while the error bars indicate standard deviation.

https://doi.org/10.1371/journal.pone.0344482.g002

3.3. Effect of physicochemical factors on collagenase production

Various physico chemical factors are accountable for triggering collagenase synthesis. The size of the inoculum is crucial for metabolite synthesis. The impact of varying inoculum sizes between 1% and 5% on collagenase synthesis was assessed. An inoculum size of 5% was shown to be optimal for collagenase synthesis yielding 4.98 U/mL with total protein of 0.55 mg/ml as depicted in Fig 2B. Decline in production and protein was seen at increasing inoculum level up to 6%. The impact of metal ions like ZnSO4 and FeSO4 showed improved yield at 0.5 g/L concentration as shown in Fig 2C. FeSO4 helped to produce the most at 6.12 U/mL with 0.58 mg/mL of protein. There was no discernible rise in production at higher metal ion concentrations of 0.7 and 1.0 g/L. Carbon sources are advised to stimulate microbial proliferation and are correlated with the generation of products. The impact of various carbon sources was evaluated. Maltose was determined to be the most effective inducer of collagenase production of 7.83 U/mL pursued by fructose (6.89 U/mL) with total protein level of 0.65 mg/mL and 0.54 mg/mL, correspondingly as illustrated in Fig 2D. Glucose, being the main carbon source present in the production medium hence not used in OFAT. Another critical factor in the fulfillment of growth necessities and product improvement is the nitrogen source. The impact of various nitrogen sources on production was assessed. As seen in Fig 2E, it became apparent that ammonium sulfate (9.97 U/mL) increased the collagenase synthesis with 0.65 mg/mL of protein. Synthesis of collagenase was aided by both organic (Urea) and inorganic (ammonium sulphate, sodium nitrate) nitrogen sources. The synthesis of collagenase has been found to be impacted by pH in the pH range (4.0–10.0). As seen in Fig 2F. pH 7.0 produced the most, with 10.51 U/mL and 0.68 mg/mL of protein. From pH 6.0 to pH 8.0, collagenase synthesis had surged; at pH 9.0, it gradually decreased showing the formation of collagenase towards slight alkalinity. In acidic regions, synthesis was minimal, likely due to low pH altering amino acid ionization and reducing activity. However, in acidic conditions, the yield was not significantly notable. The growth of microbes and their product yield are often impacted by temperature variations. Fig 2G shows that, out of 30–50℃ temperature range that was considered, a temperature of 35℃ produced the highest amount of collagenase (12.39 U/mL) and protein (0.7 mg/mL). As the temperature exceeded from 45℃, decline in activity was noticed suggesting the collagenase synthesized is thermostable to 40℃. The findings of OFAT optimization point to possibility that Bacillus siamensis strain Z1 can produce thermostable collagenase with alkaline properties.

Many factors impacting the collagenase production were studied. The inoculum size significantly influences enzyme production. Excessive microbial proliferation at high inoculum concentrations during fermentation leads to a decline in enzyme yield due to rapid depletion of essential nutrients. Conversely, a lower inoculum density results in insufficient bacterial cell populations, limiting maximal enzyme synthesis. Our findings indicate that an optimal inoculum size for peak production was 5%. Researchers discovered that the inoculum size that produced the collagenase was 2% [66]. Closely lining with our findings, [62] found that Pseudomonas species had the greatest impact with an inoculum size of 4%.

The typical production medium used was a salt solution combination with metal ions like MgSO4, but we also tested the influence of various metal ions. Metal ions help microbes maintain their redox potential and are known to have a role in metabolite production. The examined metal ions, namely ZnSO4 and FeSO4 did not demonstrate any significant increase in production at elevated concentrations. In agreement with our findings, Omojasola et al., [67] showed significant rise in collagenase yield with calcium ions. The catalytic stabilization of collagenase is known to be enhanced by the triggering impact of Ca2+ ions. The saline solution included K2HPO4 and KH2PO4, indicating the role of phosphate in maintaining the buffering capacity of the medium during fermentation. Another crucial element in the production medium is NaCl. [30] showed NaCl at elevated concentrations produced collagenase.

For the microbial fermentation process to produce primary and secondary metabolites, both carbon and nitrogen sources are essential. Each bacterium has a preference for metabolising a particular carbon source that facilitates its growth. The diverse components of simple and complex carbon sources are absorbed differently by various microorganisms, resulting in varying effects on production. Our work demonstrated that maltose is an effective inducer of collagenase production. Consistent with our findings, [68], also showed that Sucrose and maltose are good sources for enhancing collagenase synthesis. Glucose was proposed to enhance gelatinase production in Brevundimonas vescularis [35]. The addition of casein had a protease stimulatory effect for Bacillus sp. [69]. Glycerol gave optimum collagenase activity by Bacillus cereus, while other sources like maltose, glucose, sucrose and lactose also gave similar production [34].

The current research demonstrated that ammonium sulfate (inorganic) as nitrogen source significantly increased collagenase production. Organic sources such as yeast extract, peptone and inorganic sources, such as ammonium chloride and ammonium sulphate have been reported to yield gelatinase production [35] and protease production [69]. Beef extract and fish hydrolysate have also been shown to promote the protease production by Bacillus cereus [70]. Organic and inorganic sources are widely utilized by microorganisms due to their abundant nitrogenous compounds, minerals, co-factors, and vitamins. However, there exists a varying repressive action of both carbon and nitrogen sources across different microbes.

The medium pH at the cellular position affects transport of vital nutrients across bacterial cell membrane and maintains integrity. Variations in pH modify the ionization states of amino and carboxylic functionalities in proteins, directly impacting their enzymatic performance. Optimal enzyme synthesis transpires at an appropriate pH of the production medium. Consistent with our observations of optimal production within the alkaline pH spectrum, peaking at pH 8.0, collagenase synthesis by A. terreus and A. flavus was similarly identified at pH 7.5 [67]. A study indicated that B. vesicularis produced gelatinase under alkaline conditions at pH 9.0 [35]. A study showed maximum collagenase produced by Pseudomonas sp at pH 6.5. and also showed significant impact of very acidic and alkaline pH on collagenase production. The pH slowly increased from pH 4.0 and attained maximum at pH 6.5 and as it rised above pH 9.0 enzyme activity decreased. This pH variation affected nutrients intake from medium that aid in development and synthesis of metabolite [62]. Collagenase production from B. cereus and K. pneumoniae showed optimal activity at pH 7.0 and 6.5 [34].

Temperature plays a crucial role in regulating microbial growth as well as the timing and efficiency of enzyme production. An incubation temperature of 35℃ was found to be most suitable for collagenase synthesis by Bacillus siamensis strain Z1. Our findings align with earlier reports where A. terrus and A. flavus demonstrated peak collagenase activity at 37℃ [67]. Previous study showed that B. cereus and K. pneumoniae were reported to achieve optimal growth at temperatures of 37℃ [34]. [62], indicated that optimal temperature range for collagenase production by Pseudomonas sp. lied between 35–37℃, beyond which yield reduction is observed. Generally, mesophilic temperatures are advantageous due to lower energy consumption and better adaptability to changing environmental conditions. A previous study has demonstrated effective optimization of collagenase production using the OFAT approach where Enterobacter cloacae isolates F1 and C1 achieved maximum enzyme yield at pH 8.0 and 35℃ using chicken foot waste as substrate. Optimal production was observed with 1% inoculum size and peptone under static conditions resulting in highest collagenase activity of 20.23 U/mL after 48 h [71]. These findings emphasize that collagenase production is highly dependent on cultivation parameters, particularly temperature, which affect microbial proliferation and enzyme synthesis.

3.4. Statistical screening of key variables using PBD

By doing PBD screening, the medium components that contribute to collagenase production from Bacillus siamensis strain Z1 were identified. Table 1 shows the design of matrix (12 runs) accompanying responses (experimental and predicted) for collagenase production (U/mL). In the 11th run, which included MgSO4, CaCl2, Maltose, peptone and NH4SO4 at high (+1) levels, the collagenase production response was 17.77 U/mL. A range of collagenase production values were reported, from the lowest at 7.0 U/mL to the highest at 17.63 U/mL. Reason for such distinction include variations in concentrations of components used in each trial run. Table 2 shows the results of the ANOVA which revealed that all of the medium parameters affected collagenase production at varying intensities. But comparatively with all parameters, NH4SO4 and Peptone had significant impact (probability ‘p’ < 0.05). As NH4SO4 is already supplemented in production media, the following peptone showed the noticeable and beneficial effect, with an effect value of 3.292. There existed a strong correlation between all of the anticipated and actual responses. High accuracy was demonstrated by an R2 (coefficient of determination) of 99.90% and an R2 (predicted) of 98.94%. The first-order regression analysis for collagenase optimization by PBD yielded the following equation (Equation 1) which is displayed as follows.

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Table 2. Analysis of variance for PBD for collagenase production.

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(1)

Here, Y is the predicted yield (response), while X1-X10 are coded parameter of variables like urea, MgSO4, collagen, citrate, yeast extract, CaCl2, maltose, peptone, FeSO4 and NH4SO4.

In order to improve collagenase production, peptone was chosen for additional optimization utilising CCD-RSM design based on the PBD results. The PBD analysis showed that peptone factor had a substantial and significant impact on collagenase production, surpassing the influence of other factors. According to the FFD study, by Silva et al., [61], independent factors (pH, substrate concentration, aeration) were found to have significant impact on collagenase production. Optimization of collagenase production by PBD was conducted by [4], employing seven variables. Maximum yield was achieved by significant influence by temperature, culture time and concentration of soybean. A factorial design executed utilizing gelatin (0.25%), 200 × g, pH 6.0 and 24℃ resulted in maximum collagenase activity after 126 h of production [63]. A FFD analysis showed at a 95% confidence level, all factors had showed significant main effects with p < 0.05. The predominant effects factors like initial medium pH, temperature and substrate concentration had similar absolute values, but initial 2 had negative values and third one had positive value [72].

3.5. Study on collagenase synthesis using CCD-RSM

The matrix for CCD-RSM designed for collagenase production is detailed in Table 3, comprised of 13 trial runs, highlighting two described factors (peptone and molasses) and their corresponding experimental and predicted yields (collagenase production, U/mL). At the central ‘0’ value of peptone and molasses, the maximum yield of collagenase production was 80.50 U/mL. The ‘F’ value of 18.87 and ‘p’ < 0.05 in the ANOVA indicate that the generated model is satisfactory, as showed in Table 4. Results indicated linear component peptone, quadratic terms and binary interaction were relevant. For collagenase production in the designed exploratory region, the interface among peptone and molasses was analysed to be significant and prominent. The coefficient of determination (R2) was 93.09% while the adjusted R2 was 88.16%. Results from experiments and predictions show a good match, validating the accuracy and appropriateness of the executed RSM model. The verification of designed model in present research revealed some lack of fit. A second-order polynomial equation (Eq.2) resulted from the combination of the two elements is displayed below as the modelled equation.

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Table 4. Analysis of variance for quadratic model of CCD-RSM for collagenase production.

https://doi.org/10.1371/journal.pone.0344482.t004

(2)

Here, Y is yield (response) termed to be collagenase production (U/mL) and A and Bare defined factors, namely, peptone and molasses correspondingly.

As shown in Fig 3, the interactions between peptone and molasses are depicted in the response surface plot of collagenase production. In order to position in the experimental conditions for highest yield, the plot is essential. The response surface plot’s curvature indicates to setting the central value to ‘0’ achieves the maximum collagenase production. At the central value, peptone had an intermediate concentration of 2% and molasses of 3%. A concentration of both components below and above the midpoint decreased collagenase synthesis. To maximize CCD-RSM production, optimization settings were validated in triplicates. Collagenase yield was 81.58 U/mL at the optimal circumstances, which closely matched to predicted outcome, proving model’s applicability. The CCD-RSM optimization method increased collagenase production 17.93 times. The model was evaluated under experimentally adjusted settings and confirmed augmentation of collagenase production.

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Fig 3. Response surface plot of collagenase production.

Results show significant interactions among identified parameters at p < 0.05.

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CCD approach was implemented by Silva et al., [61], to optimize production of collagenase from Trichosporon sp. strain 7V using two independent variables. A maximum collagenase activity was seen at pH 5.5 and 4.0 g/L of gelatin concentration. The combination of 16℃ temperature, 3.36 day culture time and 33 g/L soybean concentration was chosen as the central point (zero level) for the optimal design using RSM [4]. A recent RSM optimization study enhanced collagenase activity from Chryseobacterium contaminans by 1.2 folds and characterization showed optimal conditions for enzyme activity were pH 7.5 and 40℃ [73]. A new strain of Penicillium citrinum produced collagenase under 72 h submerged fermentation using licuri oil extraction as substrate and further optimized by RSM following a 24 factorial design showed collagenase to be stable at 37℃ and pH 9.0 [74]. A research study chose new strain of Rhizopus microspores for collagenase production. The combined Full Factorial Design and CCD-RSM optimization led to 63% increase in collagenase production with maximum activity at 40℃ and pH 8.0, maintaining stability across wide range of pH and temperature. It was strongly inhibited by phenylmethylsulphonyl fluoride (PMSF) and was capable of hydrolyzing type I collagen and azocoll [75].

3.6. UV-Visible spectroscopic analysis of nanoparticles

The AgNPs formation (5 mM, 10 mM and 50 mM) was confirmed through visible shift in solution coloration from pale yellow to deep brown, signifying its characteristic surface plasmon resonance (SPR) of silver nanoparticles. UV-Visible spectroscopy was used to analyze the optical nature of the formed AgNPs, with a prominent absorption peak observed at 420 nm. The intensity of the SPR peak progressively increased with higher precursor concentrations, as illustrated in Fig 4A. Similarly, the synthesis of ZnONPs (10 mM and 50 mM) was verified by the appearance of a milky white precipitate following the reaction, indicating nanoparticle formation. The UV-Vis spectrum of ZnONPs exhibited a broad absorption band centered at 370 nm (Fig 4B). The enhancement of SPR peak intensity with increasing concentration further confirmed successful nanoparticle synthesis. The nanoparticles synthesis of AgNP and ZnONP and their optic properties was examined using UV-Visible spectroscopy, revealing a distinct plasmon band.

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Fig 4. UV -Visible spectroscopic characterization of nanoparticles (A) silver nanoparticles (AgNP) at 5mM, 10 mM and 50 mM and (B) zinc oxide nanoparticles (ZnONP) at 10mM and 50mM.

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The synthesis of nanoparticles (AgNP and ZnONP) and their optical properties were examined using UV-Visible spectroscopy, revealing a distinct SPR band. Cardoso et al., stated peak of absorption of 400 nm for silver nanoparticle formed by using type I collagen. Similarly, the NPs obtained by the reduction of the silver nitrate displayed a plasmon band at 420 nm for AgNPcol in the UV Vis spectra [25]. Smaller-sized nanoribbons like nanoparticles synthesized using gelatinase showed a characteristic absorbance peak at 380–400 nm [76]. The Zinc oxide nanoparticles generated by Lactobacillus sp. had absorption peak at 349 nm as described by Yusof et al., [77]. Similarly, a SPR peak was observed at 377 nm for biosynthesized ZnONPs using Lactobacillus gasseri and affirmed that the ZnONPs biosynthesis is possibly attributed to the strain’s inherent negative surface charge that potentially attracts the cations and generates the nanoparticle synthesis [78].

3.7. Structural and Functional assessment of nanoparticles

3.7.1. Functional group identification in nanoparticles by FTIR.

The reactive group characteristics and chemical modifications in AgNPs and ZnONPs synthesized using collagen hydrolysate from Bacillus siamensis strain Z1 was examined through FTIR spectroscopy within wavelength range of 400–4000 cm ⁻ ¹. The FTIR spectrum of AgNPs (Fig 5A) exhibited distinct absorption bands, with a prominent peak at 3749.79 cm ⁻ ¹ denoting to O-H extending vibrations. The existence of aliphatic C-H stretching was identified at 2974.61 cm ⁻ ¹. Additionally, multiple absorption peaks at 1646.49 cm ⁻ ¹, 1541.54 cm ⁻ ¹ and 1395.01 cm ⁻ ¹ were attributed to C = O stretching vibrations. Furthermore, a characteristic C-H aromatic bending was observed at 952.51 cm ⁻ ¹, indicating the possible presence of aromatic functional groups. The prominent peaks at 547.90 cm ⁻ ¹, 473.93 cm ⁻ ¹, and 458.40 cm ⁻ ¹ indicate the metallic characteristics of the substance in concern. The FTIR spectra (Fig 5B) of ZnONP exhibited significant peaks at 3750.04 cm ⁻ ¹ and 3357.38 cm ⁻ ¹, indicative of O-H stretching. The following peak at1640.88 cm ⁻ ¹ revealed C = O stretching. A C-C group was identified at 1542.07 cm ⁻ ¹. The frequency at 1456.89 cm ⁻ ¹ and 1395.59 cm ⁻ ¹ and attributed to the bending modes of –OH in phenols or the symmetric stretching of the –COOH group. A C-O extention was observed at 1016.09 cm ⁻ ¹ and 934.21 cm ⁻ ¹. The bands at 622.29 cm ⁻ ¹ and 567.85 cm ⁻ ¹ correspond to the vibrational modes of the bonds between oxygen and zinc molecules.

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Fig 5. Morphological and compositional analysis of Collagen hydrolysate capped nanoparticles(A) FTIR analysis of AgNP, (B) FTIR analysis of ZnONP, (C) SEM-EDS analysis of AgNP, (D) SEM-EDS analysis of ZnONP, (E) XRD analysis of AgNP, (F) XRD analysis of ZnONP, (G) TGA analysis of AgNP, (H) TGA analysis of ZnONP, (I) AFM analysis of AgNP and (J) AFM analysis of ZnONP.

https://doi.org/10.1371/journal.pone.0344482.g005

FTIR spectroscopy was employed for analyzing chemical composition of the formed AgNP and ZnONP. The findings were consistent with those reported by other researchers in the field. Cardoso et al., [79] reported a FTIR peak for amine I at 1652.84 cm ⁻ ¹ representing presence of C = O of collagen (col) bounded to AgNP (AgNPcol) and also stated that low intensity at that peak might be indicating that this group was possibly aided in the decrease and stabilization of silver nanoparticles. In a research biosynthesized AgNP using metallo serine protease as bioreducing agent in FTIR analysis showed the occurrence of various reactive groups such as carboxylic acids, alkyl ethers and amine salts that has helped in capping and stabilizing nanoparticles [80]. In a study the ZnONPs synthesized using Lactobacillus sp. supernatant (CFS) showed broad absorption peaks at 3282.2 cm ⁻ ¹ attributing to O-H bond, 1638.11 cm ⁻ ¹ for amide I band denoting to C = O stretching and peak at 455.29 cm ⁻ ¹ depicted for zinc oxide core band [77]. Similar absorption bands for ZnONPs synthesized using supernatant of L.gasseri was described by El-Sayed et al., [78] at peaks 3550 cm ⁻ ¹, 1653 cm ⁻ ¹, 1560 cm ⁻ ¹, 1029 cm ⁻ ¹ and 533 cm ⁻ ¹.

3.7.2. SEM-EDX analysis.

SEM is a fundamental technique for analyzing nanoparticle size and morphology. In this study, SEM was employed to characterize the surface structure and shape of synthesized AgNPs and ZnONPs. The AgNPs made from collagen hydrolysate shown in Fig 5C had a size range of 30 nm to 90 nm. They were non-transparent, crystalline, slightly spherical and multifaceted. The EDX spectrum of AgNPs (Fig 5C) exhibited a strong characteristic signal at ~ 3 keV, which is a definitive signature of elemental silver, confirming the formation of silver nanoparticles. The presence of oxygen peaks suggests the involvement of bioactive molecules from the collagen hydrolysate acting as stabilizing and capping agents on the nanoparticle surface. The SEM observations revealed that the ZnONPs were hexagonal, opaque and uniformly distributed with particle sizes ranging from 40–90 nm (Fig 5D), indicating successful nanoscale synthesis. The EDX spectrum of ZnONPs (Fig. 5D) showed a prominent signal at ~ 1 keV, confirming the presence of zinc. Additional oxygen peaks further verified the formation of zinc oxide nanoparticles.

A serine protease mediated AgNPs synthesized had spherical shape and some aggregated to form large particles, and its EDX analysis displayed peak at 3 keV confirming the existence of AgNPs [80]. S et al., [81] stated that biosynthesized AgNPs to be of 35 nm and EDX analysis confirmed presence of Ag with sharp peak at 3 keV. A study reported the morphology of biosynthesized ZnONPs to be of hexagonal structures and observed to be accrue like bullets and some as spherical [78]. Biosynthesized ZnONP were found to be spherical in shape and clustered and the purity of zinc was confirmed with sharp peak at 1keV [82]. SEM analysis confirmed that the silver nanoparticles synthesized using Costus spicatus plant extract were predominantly spherical, crystalline, and exhibited slight clustering, with particle sizes ranging from 10 to 25 nm. Furthermore, EDX analysis revealed a strong characteristic absorption peak at approximately 3 keV, confirming the presence of elemental silver [83].

3.7.3. XRD analysis.

The XRD examination exhibited the crystalline nature of the AgNPs produced from collagen hydrolysate and they exhibited improved antibacterial properties. The XRD pattern of AgNPs (Fig 5E) displayed strong Bragg reflections at 2θ values of 32.30°, 46.24°, 61.76°, and 72.17°, corresponding to the 111, 200 220 and 311 planes of face centered cubic (fcc) silver, in good agreement with JCPDS (Joint Committee on Powder Diffraction Standards) silver card No. 04–0783. Additional diffraction peaks observed at lower 2θ values of 20.84°, 29.71°, 36.60°, 47.86°, 55.05°, 57.36° and 87.32° are attributed to organic phytochemical residues or antibacterial compounds from the attached to the AgNP surface, confirming successful bio-mediated synthesis.

The synthesised ZnONP’s XRD pattern (Fig 5F) displayed peaks at 2θ of 19.40°, 28.25°, 32.47°, 45.98°, 47.61°, 51.50°, 59.01°, 62.53° corresponding to Bragg reflections at the indices 100, 002, 101, 102, 110, 103, 112 and 201 respectively, indicating to be hexagonal wurtzite structure. Other peaks were observed at 9.65°, 17.44°, 19.40°, 22.89°, 26.29°, 28.25°, 33.86°, 35.64°, 38.46°, 40.91°, 43.12°, 49.99°, 59.01°, 61.63°. These results are consistent with the standard data JCPDC card No.36–1451, confirming the crystalline phase purity of ZnONPs. Thus, XRD confirms crystalline structure and phase identity, collectively demonstrating the successful green synthesis of AgNPs and ZnONPs using collagen hydrolysate extract.

The crystalline nature of the synthesized AgNPs was evident from four prominent Bragg reflection peaks attributing to 111, 200, 220 and 311 planes, aligning well with previous findings. Khan et al., [80] confirmed the crystalline structure of silver nanoparticles through peaks at 2θ values of 38.15°, 46.26°, 67.43° and 77.76° which match these lattice planes. Similar diffraction patterns at these planes have also been reported by several researchers [25,79]. El-sayed et al., [78] reported very similar strong diffraction peaks for biosynthesized ZnONPs at 2θ values of 31.7°, 34.4°, 36.2°, 47.5°, 56.5°, 62.7°, 68.1°, 71.7° and 76.7° that corresponded to alike indices. These lattice plane reflections have likewise been noted by several researchers [82,84].

3.7.4. TGA based assessment of heat stability.

The thermal behaviour of the nanoparticles synthesized were evaluated using thermogravimetric analysis (TGA), which assesses mass changes astemperature, thereby shedding light on water content, heat resistance, and the presence of organic constituents associated with the nanoparticles. The TGA profile of AgNPs (50 mM) exhibited a four-step weight loss pattern upon heating to 1000 °C under controlled conditions (Fig 5G). An initial weight reduction of 5.7% was recorded at 265.74 °C, ascribed to loss of surface-adsorbed water content. A weight loss of 6.07% was observed when temperature was increased to 600℃, representing the primary decomposition phase, likely associated with the breakdown of organic moieties such as proteins, polysaccharides, and phospholipids attached to the nanoparticle surface. Subsequently little loss of 1.3% was observed in third phase and lastly 5.6% weight reduced at 1000℃ indicating complete decomposition of collagen hydrolysate AgNP. Similarly, the TGA curve for ZnONPs (Fig 5H) showed an initial prominent mass loss of 12.66% between 82.46℃ and 200℃ attributing to moisture evaporation. Further 3.915% loss seen when temperature exceeded to 341.84℃. Finally, 0.57% cut down was seen upon residual char left out.

The TGA results for AgNPs were consistent with the findings reported by David and Maldovan [85] showing a noticeable reduction in sample weight. The AgNPs TGA profile showed sequential weight losses due to moisture evaporation, degradation of surface-bound biomolecules, and thermal breakdown of stable aromatic compounds from extract sample. Comparable weight loss patterns for silver nanoparticles have been documented by other researchers [8688]. Thermogravimetric analysis of ZnO nanoparticles by [89] revealed an initial 2.3–9% weight loss due to water desorption, followed by a 28% loss attributed to the release of organic constituents, and 55–66% weight loss with complete decomposition occurring at elevated temperature. Similar TGA findings for ZnONPs are previously reported [90,91]. In a study TGA analysis of the green synthesized silver nanoparticles showed enhanced thermal stability, with major weight loss occurring above 200–300℃ and total organic content of 7.3%, attributed to biomolecular surface coating [92].

3.7.5. Topographical profiling.

AFM was utilized for assessing exterior structure of the Ag and ZnO nanoparticles. AgNPs were shown to be in proximity and associated with the collagenase enzyme. The AgNP were uniformly distributed all over the surface, with the majority of nanoparticles exhibiting spherical shape resulting in a crystalline appearance of the surface (Fig 5I). The dimensions of the AgNP formed through hydrolysate of the Bacillus siamensis Z1 strain were noted to fall within an acceptable range of 70–80 nm. The synthesised ZnONP were observed to be small spherically particles clustered together and was unevenly scattered (Fig 5J). The dimensions of ZnONP varied from 80 to 90 nm.

Results from surface imaging using AFM in this study were comparable to prior investigations. Manimaran et al., [93] documented green generation of silver nanoparticles using Hypsizygusulmarius. Particle size analysis indicated that the AgNPs were uniformly distributed, measuring 97.14 nm. In another study, both silver and gold nanoparticles were synthesized utilizing chicken feather extract as a base material, the resulting particles were spherical, with silver nanoparticles ranging from 3–13 nm and gold nanoparticles from 4–20 nm in size [94]. Zinc oxide nanoparticles produced using Ocimum basilicum extracts displayed an average particle size between 18–30 nm and were characterized by smooth surface morphology [95].

Biogenic and bio-based nanoparticles synthesized through biological routes are increasingly recognized as environmentally safer alternatives to conventionally synthesized NPs. These greener nanoparticles generally exhibit enhanced biocompatibility and reduced ecotoxicity because their synthesis avoids chemicals and often uses biodegradable biological capping/reducing agents derived from biomass [96]. A review demonstrates that such bio-derived nanoparticles – including metal and metal-oxide NPs stabilized with proteins, polysaccharides or enzyme hydrolysates can be applied in biomedical and environmental contexts (e.g., antimicrobial coatings, bioremediation) with lower ecotoxicity and reduced persistence in soil and aquatic systems [97]. Therefore, incorporating collagen hydrolysate-stabilized nanoparticles in applications not only maintains functional efficacy but also mitigates environmental risks, although systematic life-cycle studies remain necessary to fully access environmental fate and long-term ecological impact [98].

3.8. Biological assessment of nanoparticles and collagen hydrolysate

3.8.1. Assessment of antibacterial activity.

The antibacterial potential of collagen hydrolysate, AgNPs, and ZnONPs was assessed, and in Table 5 results are summarized. The synthesized AgNPs at varying concentrations (5 mM, 10 mM, and 50 mM) and ZnONPs (10 mM and 50 mM) were tested for antibacterial activity against Bacillus cereus and Escherichia coli. The green synthesized nanoparticles demonstrated a concentration-dependent increase in inhibitory effect. The maximum antibacterial activity was demonstrated by AgNPs (50 mM) synthesized using collagen hydrolysate derived from collagen hydrolysate by Bacillus siamensis strain Z1, resulting in inhibition zones of 8.4 ± 0.2 mm against B. cereus and 9.8 ± 0.2 mm against E. coli, as shown in Table 5. Reduced antibacterial activity was noted at lower concentrations of AgNPs. Specifically, AgNPs synthesized from collagen hydrolysate at 10 mM and 5 mM exhibited inhibition zones of 5.5 ± 0.5 mm and 4.1 ± 0.6 mm against B. cereus, and 6.4 ± 0.3 mm and 5.0 ± 0.2 mm against E. coli, correspondingly. In contrast, the highest inhibitory activity was observed with 50 mM ZnONPs synthesized from collagen hydrolysate, showing inhibition zones of 7.3 ± 0.6 mm and 8.1 ± 0.4 mm for B. cereus and E. coli, respectively. Furthermore, collagen hydrolysate derived from marine collagen hydrolysis exhibited substantial inhibition zones of 5.1 ± 0.3 mm and 5.4 ± 0.3 mm against B. cereus and E. coli, respectively. Both collagen hydrolysate and the biosynthesized nanoparticles demonstrated a notable antibacterial effect against Gram-positive and Gram-negative pathogenic strains, confirming their promising antimicrobial potential.

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Table 5. Antimicrobial activity assessment of collagenase enzyme and its Nanoparticles.

https://doi.org/10.1371/journal.pone.0344482.t005

The current findings demonstrate that all synthesized nanoparticles at different doses, together with collagen hydrolysate exhibited antibacterial activity, towards certain pathogens. In a study AgNPs stabilized in type I collagen showed anti-bacterial property against E.coli and Bacillus megaterium [99]. Similarly, antibacterial activity on both Staphylococcus aureus and E.coli was exhibited by of collagen based AgNPs [79]. A study reported antibacterial activity of silver nanoparticles stabilized by hydrolyzed collagen and natural polymers on S. aureus, P. aeruginosa and E. coli and, stated the effectiveness of antibacterial mechanism is strongly impacted by particle size. AgNPs provide an extensive contact surface, promoting adhesion to bacterial cell walls and facilitating their entry into the cells. This process disrupts the membrane integrity, ultimately causing cellular damage [25]. The antibacterial efficacy of Calotropis gigantea-derived CuO nanoparticles (CG-CuO-NPs) was evaluated against five bacterial strains (S. aureus, B. subtilis, Enterobacter, E. coli and P. aeruginosa). Antibacterial activity assessed at concentrations of 20–80 µl/mL showed a clear concentration dependent reduction in optical density, and indicated increased bacterial growth inhibition at higher doses [100].

Recent advances in bioenzyme mediated nanomaterials have highlighted potential of enzyme and protein hydrolysates as effective antibacterial agents. Keratinase mediated synthesis of silver nanoparticles (AgNPs) represents a promising bio-based approach, wherein keratinase from Pseudomonas aeruginosa C1M functions simultaneously as a reducing and stabilizing agent for Ag+ ions, yielding crystalline AgNPs (~ 119 nm) that exhibited significant antibacterial activity against E.coli and S. aureus in well diffusion assays, demonstrating robust antimicrobial efficacy derived from enzyme-capped NPs without external capping agents [101]. Concordant work using keratin hydrolysate from Bacillus velezensis to biosynthesize both AgNPs and ZnONPs also reported broad antibacterial activity against Bacillus cereus and E.coli, underscoring the capacity of keratin hydrolysate peptides to drive nanoparticle formation with inherent antimicrobial properties [23]. In a Collagen-AgNP nanocomposite research, wherein collagen provides a biocompatible scaffold for noble metal nanoparticles, showed antimicrobial efficacy against B. subtilis and E.coli, indicating that the combination of hydrolyzed protein matrices with metal nanoparticles can yield materials with dual benefits of biodegradability and potent antibacterial activity suited for wound care and biomedical coatings [102].

The antibacterial efficacy of hydrolysate mediated silver and zinc oxide nanoparticles results from combination of physical membrane disruption, oxidative stress induction and metal ion mediated toxicity. Silver nanoparticles release Ag+ ions that interact with thiol groups of bacterial enzymes and membrane proteins, leading to impaired respiration and cell death, while ZnONPs generate reactive oxygen species that cause lipid peroxidation, protein oxidation and DNA damage. Sivalingam and Pandian [103] reported that biosynthesized AgNPs exhibit enhanced antibacterial activity due to improved interaction with negatively charged bacterial cell walls, facilitated by surface-bound biomolecules. Chaurasia et al., [104] and Surendran et al., [105] further emphasized that biocomponent capping enhances nanoparticle dispersion and sustained ROS generation, resulting in broader-spectrum antibacterial action. Additionally, Sivalingam et al., [106] demonstrated effective microbial inhibition at lower nanoparticle concentrations with minimal systemic toxicity, highlighting the role of biological surface functionalization in improving antimicrobial efficiency and safety.

3.8.2. Assessment of antioxidant efficacy.

The antioxidant potential of the samples was assessed using ABTS and DPPH assays, which demonstrated their radical scavenging abilities and provided insights into their antioxidant properties. Collagen hydrolysate, AgNPs and ZnONPs exhibited varying antioxidant capacities, as determined by their ability to neutralize the ABTS radical cation. The ABTS assay results revealed a time-dependent enhancement in the antioxidant activity of all tested samples. After 48 h, the ABTS radical scavenging activity ranged between 28% and 55.13% across the samples (Fig 6A). Notably, AgNPs exhibited the highest antioxidant activity, achieving 55.13% inhibition, while the standard antioxidant BHT displayed 73% inhibition. Comparatively, the nanoparticles (AgNPs and ZnONPs) showed significant antioxidant potential over the collagen hydrolysate, which displayed 28% inhibition. The DPPH assay was conducted to assess the capacity of collagen hydrolysate, AgNP and ZnONP to scavenge free radical DPPH at varying concentrations (30–150 µg/mL). The assay revealed a concentration influenced enhancement in antioxidant potential of the analyzed samples. At 30 µg/mL concentration, the radical scavenging activities of AgNPs, ZnONPs and collagen hydrolysate were recorded as 56.89%, 39.35% and 27.28% respectively (Fig 6B), with corresponding IC50 values of 21.60 µg/mL, 29.57 µg/mL and 35.45 µg/mL. A progressive increase in the concentration of collagen hydrolysate, AgNPs and ZnONPs resulted in a significant elevation in % radical scavenging activity. At 150 µg/ml, the scavenging efficiencies of AgNPs, ZnONPs and collagen hydrolysate were observed to be 78.46%, 60.19% and 45.64% respectively, with IC50 values of 108.01 µg/mL, 150 µg/mL demonstrating potent antioxidant efficacy. The findings indicate AgNPs exhibiting superior antioxidant ability. The standard ascorbic acid exhibited 94% radical scavenging activity with IC50 value of 79.78 µg/mL.

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Fig 6. Antioxidant activity of collagen hydrolysate and nanoparticles using(A) ABTS assay and (B) DPPH radical scavenging activity.

https://doi.org/10.1371/journal.pone.0344482.g006

A collagen hydrolysate with short peptide fraction (PF4) exhibited highest DPPH radical scavenging activity at 1 mg/mL concentration [107]. In a study using collagen and aminated xanthan gum bio-capped AgNPs were synthesized which also comprised melatonin that acted as oxidative stress and inflammation modulator. The bio-hybrid nanoparticles exhibited strong antioxidant activity of 50.7 ± 5% by DPPH method and this activity is might be due to presence of AgNP and melatonin and the hydrogels potent radical neutralizing capacity can inhibit oxidative stress generation at the injury site [108]. As similar to current study, Chitosan capped AgNPs showed increased radical scavenging activity towards DPPH with increasing concentrations. The highest activity with lowest EC50 value was noticed in scavenging DPPH (0.4 mg/mL) [109].

Turbinaria ornata marine micro-algae (TUN) as carrier for ZnONP blended nanoparticles were synthesized and characterized as potential antioxidant product which showed very good efficacy against the tested reactive species like DPPH (88.2 ± 1.44%) and ABTS (90.5 ± 1.8%) [110]. Several studies showed biosynthesized zinc oxide nanoparticles exhibiting antioxidant potential through ABTS and DPPH method with similar pattern of dose dependent increase in scavenging radicals [21]. A metallo-serine protease capped AgNPs were biosynthesized and it displayed effective 68.15% DPPH radical scavenging activity at 500 µg/mL concentration. The study has shown that AgNPs have antioxidant capacity, which may help reduce oxidative stress associated with a number of illnesses, including cancer. Their special qualities, such as their high reactivity and surface to volume ratio improve their reactivity with reactive species and their capacity to donate electrons, which makes them appropriate for cancer treatments, since cellular oxidative damage significantly impacts the onset of tumours [80].

The enhanced antioxidant activity of green synthesized nanoparticles is primarily attributed to the synergistic interaction between the nanoparticle surface and hydrolysate-derived bioactive functional groups. Biomolecules such as peptides, phenolics, amino acids and hydroxyl-containing compounds act as capping and stabilizing agents, facilitating efficient hydrogen atom donation and electron transfer to neutralize free radicals. Surendran et al., [105] demonstrated that biofunctionalized nanoparticles exhibit superior radical scavenging activity compared to uncapped counterparts due to increased surface reactivity and redox potential. Chaurasia et al., [104] further reported that biologically synthesized ZnO nanoparticles act as ROS modulators rather than excessive ROS generators, owing to organic surface passivation. Similar observations by Sivalingam et al., [106] and Sivalingam [111,112], indicate that green synthesized AgNPs significantly reduce oxidative stress while maintaining biocompatibility, confirming that hydrolysate-mediated nanosystems provide controlled antioxidant effects through combined nanoscale redox behavior and bioactive surface chemistry.

3.8.3. Analysis of cytotoxic effect.

The cytotoxic potential of the synthesized nanoparticles and collagen hydrolysates were evaluated using the MTT assay, which assessed cell viability and cytotoxic efficiency under specific experimental conditions against MCF-7 breast cancer cell line and normal mammalian cell lines (L929). The anticancer effects of AgNPs, ZnONPs and collagen hydrolysates were examined across varying concentrations (3.125, 6.25, 12.5, 25, 50, and 100 µg/mL), and cell proliferation was analyzed in MCF-7 cells, as illustrated in Fig 7. The IC50 values for AgNPs, ZnONPs, and collagen hydrolysate against MCF-7 cells were determined to be 8.87 µg/mL, 25.21 µg/mL, and 44.81 µg/mL, correspondingly, while the standard drug Doxorubicin exhibited an IC50 of 7.56 µg/mL. AgNPs demonstrated a significantly higher anticancer potential compared to ZnONPs. However, at concentrations of 50 µg/mL and above, both nanoparticles showed notable anticancer efficacy. Additionally, when tested on normal mammalian cell lines (L929), the synthesized nanoparticles did not induce any significant reduction in cell viability.

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Fig 7. Assessment of anticancer potential of nanoparticles and collagen hydrolysates against breast cancer cells.

https://doi.org/10.1371/journal.pone.0344482.g007

[25] reported the biosynthesized AgNPs promoted concentration dependent decrease of macrophage viability indicating low cytotoxicity. In a study bio synthesized ZnO nanoparticles showed strong, selective cytotoxic effects against Caco-2 and A549 cancer cells, with minimal impact on normal WI38 cells. The reaction was dose influential, with higher concentrations causing greater toxicity [84]. A study showed usage of Aspergillus sp. extract to biosynthesize ZnONPs and it exhibited anticancer activity with IC50 values of 59.74 µM, 43.21 µM, 57.03 µM and 35.66 µM against cell lines WI38, HCT116, HePG2 and MCF-7, respectively [113]. Swietenia macrophylla-mediated silver nanoparticles showed notable strong cytotoxicity against MCF-7 breast cancer cell lines with a low IC50 value of 2.1 µg/mL and a high selectivity index of 5, outperforming both plant extract and conventional AgNPs [111].

The anticancer activity of hydrolysate – mediated silver and zinc oxide nanoparticle is mainly governed by selective intracellular ROS generation, mitochondrial dysfunction, and apoptosis induction in cancer cells. Cancer cells exhibit higher baseline oxidative stress and enhanced nanoparticle uptake, making them more susceptible to nanoparticle-induced redox imbalance. Sivalingam [100] reported that biosynthesized AgNPs trigger mitochondrial membrane depolarization, cytochrome-c release, and caspase-mediated apoptosis through excessive ROS accumulation. ZnO nanoparticles further contribute by pH- dependent dissolution and Zn2+ ion release in the acidic tumor environment, leading to DNA damage and cell cycle arrest, as discussed by Chaurasia et al., [104]. Surendran et al., [105] and Sivalingam et al., [106] highlighted that hydrolysate functionalized nanoparticles exhibit tumor selectivity and reduced toxicity toward normal cells. In a recent study biosynthesized ZnO nanoparticles were shown to exert dose-dependent cytotoxicity against MCF-7 breast cancer cells with significant cell death attributed to oxidative stress mechanisms at low micromolar concentrations, consistent with increased intracellular ROS apoptosis induction [114].

Both, silver nanoparticle (AgNPs) and zinc oxide nanoparticles (ZnONPs) demonstrate promising biocompatibility and potential for safe biomedical application when engineered and dozed appropriately. Biogenically synthesized AgNPs have shown excellent in-vivo compatibility, with histopathological and serum biochemical analyses indicating no significant liver, kidney, heart, lung, brain or spleen toxicity at therapeutic doses (up to 50 mg/kg body weight), highlighting their suitability for intravenous administration in animal models when surface coated and size-controlled to reduce direct cellular stress [115]. Similarly, ZnO NPs possess intrinsic advantages as biodegradable, essential trace element-based nanoforms; in several preclinical studies, ZnO-based formulations exhibited negligible systemic toxicity in treated animals, stable body weights, and no major organ damage relative to controls, particularly when designed with targeting ligands or coatings to enhance tumor selectivity and minimize off-target exposure. In tissue integration models, ZnONPs have also demonstrated favorable biocompatibility in complex in-vivo systems, promoting endothelial and fibroblast activity relevant for wound healing without adverse reactions [116]. Collectively, these findings support the view that with careful design, dosing and functionalization, AgNPs and ZnONPs can achieve favorable safety profiles in-vivo and serve as viable candidates for further preclinical evaluation in cancer therapy and other biomedical applications.

4. Conclusion

The present study demonstrates the effective production and optimization of collagenase from Bacillus siamensis strain Z1, achieving a 17.93-fold enhancement under optimized physiochemical conditions of inoculum size (5.0%), metal ion mixture (0.5 g/L), carbon (maltose) and nitrogen (ammonium sulphate) sources, pH (7.0) and temperature (35℃) and using response surface approach. The collagenase-generated hydrolysate enabled the green synthesis of silver and zinc oxide nanoparticles, supported by comprehensive structural and stability characterization and the biosynthesized nanoparticles exhibited notable cytotoxic, antibacterial, and antioxidant activities. Importantly, this work establishes a sustainable strategy for valorizing collagen-rich waste into bio-functional, high-value nanomaterials with potential biomedical and environmental applications. Although the biological efficacy was confirmed through in-vitro evaluations, further in-vivo and mechanistic studies are required to systemic behavior, metabolism and translational applicability, which will be addressed in future studies.

Highlights

  • Collagenase-producing Bacillus siamensis Z1 was isolated and identified from marine water.
  • Marine collagen was utilized as a sustainable substrate for eco-friendly waste valorization.
  • Collagenase yield was optimized by strategies like OFAT, Plackett-Burman and CCD-RSM enhancing production by 17.93-fold.
  • Ag and ZnO nanoparticles were synthesized using collagen hydrolysate and thoroughly characterized.
  • Biosynthesized nanoparticles exhibited positive antimicrobial, antioxidant and anticancer activities.

Supporting information

S1 Fig. Screening of Z1 strain (A) primary screening on skim milk agar plate and (B) secondary screening on collagen agar plate with ZOC (Zone of Clearance).

https://doi.org/10.1371/journal.pone.0344482.s001

(DOCX)

Acknowledgments

The authors would like to thank KLE Technological University, Hubballi, for the valuable support through the Ph.D. Fellowship Program. The author would like to express sincere gratitude to AlMaarefa University, Riyadh, Saudi Arabia, for supporting this research.

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