Skip to main content
Advertisement
Browse Subject Areas
?

Click through the PLOS taxonomy to find articles in your field.

For more information about PLOS Subject Areas, click here.

  • Loading metrics

Tumorigenicity decrease in Bcl-xL deficient MDCK cells ensuring the safety for influenza vaccine production

  • Jiahao Zheng ,

    Contributed equally to this work with: Jiahao Zheng, Boran Li

    Roles Conceptualization, Data curation, Investigation, Methodology, Writing – original draft

    Affiliations National Engineering Technology Research Center for Combined Vaccines, Wuhan, China, Wuhan Institute of Biological Products Co.Ltd., Wuhan, China

  • Boran Li ,

    Contributed equally to this work with: Jiahao Zheng, Boran Li

    Roles Supervision

    Affiliation Medical Products Administration of Hubei Province, Wuhan, China

  • Lanxin Jia,

    Roles Methodology, Software

    Affiliations National Engineering Technology Research Center for Combined Vaccines, Wuhan, China, Wuhan Institute of Biological Products Co.Ltd., Wuhan, China

  • Jiayou Zhang,

    Roles Conceptualization, Methodology, Supervision

    Affiliations National Engineering Technology Research Center for Combined Vaccines, Wuhan, China, Wuhan Institute of Biological Products Co.Ltd., Wuhan, China

  • Zheng Gong,

    Roles Conceptualization, Methodology

    Affiliations National Engineering Technology Research Center for Combined Vaccines, Wuhan, China, Wuhan Institute of Biological Products Co.Ltd., Wuhan, China

  • Yang Le,

    Roles Methodology, Software

    Affiliations National Engineering Technology Research Center for Combined Vaccines, Wuhan, China, Wuhan Institute of Biological Products Co.Ltd., Wuhan, China

  • Xuanxuan Nian,

    Roles Methodology, Supervision

    Affiliations National Engineering Technology Research Center for Combined Vaccines, Wuhan, China, Wuhan Institute of Biological Products Co.Ltd., Wuhan, China

  • Xuedan Li,

    Roles Methodology

    Affiliations National Engineering Technology Research Center for Combined Vaccines, Wuhan, China, Wuhan Institute of Biological Products Co.Ltd., Wuhan, China

  • Bo Liu,

    Roles Resources, Software

    Affiliations National Engineering Technology Research Center for Combined Vaccines, Wuhan, China, Wuhan Institute of Biological Products Co.Ltd., Wuhan, China

  • Daiguan Yu,

    Roles Conceptualization, Writing – review & editing

    Affiliations National Engineering Technology Research Center for Combined Vaccines, Wuhan, China, Wuhan Institute of Biological Products Co.Ltd., Wuhan, China

  • Zhegang Zhang ,

    Roles Conceptualization, Methodology, Writing – review & editing

    changguili@aliyun.com (CL); zhangzhegang@sinopharm.com (ZZ)

    Affiliations National Engineering Technology Research Center for Combined Vaccines, Wuhan, China, Wuhan Institute of Biological Products Co.Ltd., Wuhan, China

  • Changgui Li

    Roles Supervision, Writing – review & editing

    changguili@aliyun.com (CL); zhangzhegang@sinopharm.com (ZZ)

    Affiliation National Institute for Food and Drug Control, Beijing, China

Abstract

Madin-Darby canine kidney (MDCK) cells are the recognized cell strain for influenza vaccine production. However, the tumorigenic potential of MDCK cells raises concerns about their use in biological product manufacturing. To reduce MDCK cells’ tumorigenicity and ensure the safety of influenza vaccine production, a B-cell lymphoma extra-large (Bcl-xL) gene, which plays a pivotal role in apoptosis regulation, was knocked-out in original MDCK cells by CRISPR-Cas9 gene editing technology, so that a homozygous MDCK-Bcl-xL-/- cell strain was acquired and named as BY-02. Compared with original MDCK cells, the proliferation and migration ability of BY-02 were significantly reduced, while apoptosis level was significantly increased, the endogenous mitochondrial apoptotic pathway were also modulated after Bcl-xL knock-out in MDCK cells. For tumor formation assays in nude mouse tests, all ten mice injected with original MDCK cells presented tumors growth in the injection site, in contrast to only one mouse injected with BY-02 cells presented tumors growth. These findings suggest that Bcl-xL knock-down is an effective strategy to inhibit tumor formation in MDCK cells, making BY-02 a promising genetically engineered cell strain for influenza vaccine production.

1. Introduction

Globally, influenza virus causes an estimated 3–5 million severe cases and 300 000–650 000 deaths each year, which places a heavy economic burden on low- to middle-income countries [1, 2]. The influenza virus is a single-stranded, segmented RNA virus with low RNA polymerase fidelity, and thus, its genomic mutation rate significantly increases relative to other viruses [3]. Seasonal influenza vaccine is crucial to deal with the global influenza epidemic. The eggs laid by embryonated hens have been used as substrates to produce influenza vaccines for >60 years. Influenza virus often acquires antigenic changes through host adaptation during serial passages in eggs. The most common amino acid sequence changes are observed in hemagglutinin and neuraminidase, which reduce the protective effect of the vaccine [46]. Studies have shown that egg adaptation can lead to a 7%–21% reduction in vaccine match (VM) and a 4%–16% reduction in influenza vaccine effectiveness (IVE). This is similar to the effect of antigen drift on VM (8%–24%) and IVE (5%–20%) [7]. Since its establishment in 1958, the Madin-Darby canine kidney (MDCK) cell line has been extensively used for amplifying and purifying various viruses. Due to their high susceptibility, rapid proliferation and stable passage matrix for the influenza virus, MDCK cells are recognized as one of the most suitable cells for the production of the influenza virus vaccine [8, 9]. However, Intravenous inoculation of chicken embryos with MDCK cells has been previously induced tumor occurrence in the embryonic brain and chorioallantoic membrane nodules [10]. The nodules were observed in neonate BALB/c nude mice inoculated with MDCK cells [11], and they were found to be adenocarcinomas using histological analysis [12]. In other studies, MDCK cells adapted for suspension culture caused tumor formation only injecting with as few as ten cells per nude mouse [13]. Thus, to improve the safety of the influenza vaccine, the best solution is to develop nontumorigenic MDCK cell strains.

Apoptosis is an important part of programmed cell death and is the main mode of regulating the steady state of cell populations. Abnormal apoptosis can lead to neurological diseases [14], immune system abnormalities [15], and cancer [16]. Cancer is a classic example of abnormal cell cycle regulation where excessive cell proliferation or decreased cell removal occurs [17]. The inhibition of cell apoptosis is the main mechanism of certain cancers. Apoptosis mainly includes the intrinsic apoptotic pathway or mitochondrial pathway and the extrinsic apoptotic pathway or death receptor pathway [18]. The regulation and control of the mitochondrial apoptosis pathways are mainly implemented by the Bcl-2 family members [19], and the imbalance of apoptosis with anti-apoptosis proteins causes several cancers. Tumor cells can promote anti-apoptotic protein expression or downregulate proapoptotic protein expression to avoid programmed death. Bcl-xL, an anti-apoptotic protein, has been recognized as an important factor regulating the mitochondrial pathway, and it shows high expression in numerous cancer cells [20]. Inhibiting Bcl-xL efficiently triggers apoptosis of melanoma [21] and ovarian cancer cells [22].

The mechanism of the effect of Bcl-xL on the tumorigenicity of MDCK cells remains unclear. Therefore, in this study, we used CRISPR-Cas9 technology to construct a Bcl-xL deletion cell strain named as BY-02 and analyzed the effect of Bcl-xL on MDCK cell proliferation, migration, and tumorigenicity. Its molecular mechanism was explored using transcriptomics. The aim of the study was to identify a safe and reliable genetic engineering cell strain for influenza vaccine production.

2. Materials and methods

All procedures were conducted in accordance with the “Guiding Principles in the Care and Use of Animals” (China) and were approved by the Ethical Review Committee of Experimental Animal Welfare, Wuhan Institute of Biological Products Co., LTD (WIBP-AⅡ312023002).

2.1 Cell lines and cultivation conditions

The original MDCK (CRL-2935TM) cells were bought from the American Type Culture Collection (ATCC, USA). MDCK cells were cultured in VP-SFM (Gibco) medium containing 5% FBS (Gibco) and 1% glutamine. 2BS, VERO cells (ATCC, USA) were cultured in DMEM (Gibco) containing 5% FBS (Gibco) and 1% glutamine, followed by inoculation in T-flasks (Corning) and incubation at 37°C under 5% CO2.

2.2 Mice

The 4–7-week-old female nude mice were provided by Vital River Laboratory Animal Technology Co., Ltd. (Beijing) for cell tumorigenicity analysis. All the animal experimental protocols received approval from the Ethical Review Committee for Experimental Animal Welfare of Wuhan Institute of Biological Products Co., Ltd. (protocol code WIBP-AⅡ312023002, 22 July. 2022). Up to five mice were housed in a system of individually ventilated cages and provided with sterilized food and water. Our study with observational experimental design was carried out in compliance with the ARRIVE guidelines.

2.3 Construction of bcl-xl knockout with CRISPR-Cas9 technology and cell screening

The bcl-xl gene of the corresponding cannine species was found in NCBI, and the single-guide (sg) RNA sequence with high specificity located in exon 1 was screened through the CRISPR design website (http://www.e-crisp.org/E-CRISP/). The gRNA sequence was synthesized and cloned in pX459 plasmid harboring Cas9. Meanwhile, a targetting vector containing the upstream and downstream homology arms at the target site and the puromycin selection marker was constructed. Half million of MDCK cells in a cuvette were electroporated with 8 μg plasmids containg the pX459 and the targetting vector with the Gene Pulser Xcell electroporation system (Bio-Rad, USA) at 130 V, 1 pulse, and 25 ms pulses. The cells were then incubated at 37°C under 5% CO2. The medium was changed at 48-h post-electroporation and then the selection of cell clones was selected with the complete medium containing 8 μg/mL puromycin. Monoclonal cells were obtained by limiting dilution assay.

2.4 Real-time quantitative reverse transcription PCR (qRT-PCR)

Total RNA from MDCK cells was extracted with Trizol reagent and quantified with the microplate reader (Thermo Fisher, USA). The total RNA was used as a template for reverse transcription to cDNA according to the specification of PrimeScriptTM IV 1st strand cDNA Synthesis Mix (TaKaRa, Japan). Next, the amplification of DNA was according to the specification of ChamQ SYBR qPCR Master Mix (Vazyme, China) by 7500 Fast Real-Time PCR System (ABI Life Technologies, Singapore). was employed for recording. The quantify of the target gene was determined by compared to the β-actin internal reference.

2.5 Western-blotting

After washing with prechilled PBS, the MDCK cells were lysed with the buffer containing 50 mM Tris-HCL, 1% TritonX-100, 150 mM NaCl, 1% sodium deoxycholate, 0.1% SDS, and 100x protease inhibitor. Protein quantification was performed using the Lowry method. Protein samples were separated via electrophoresis using 8% SurePAGETM (GenScript) gels, transferred to nitrocellulose membranes and subjected to immunoblotting. The membranes were then blocked overnight using 5% bovine serum albumin at 4°C, followed by 2 h incubation with primary antibody (1:1000) under ambient temperature. Membranes were washed with Tris-buffered saline with Tween 20 and incubated with HRP-labeled goat anti-rabbit or anti-mouse IgG secondary antibody (Sangon; 1:10000) for 2 h. Amersham ImageQuant 800 system (Cytiva, Japan) was utilized for scanning and analysis. The proteins on the membrane were detected using the following specific antibodies: anti-Bcl-xL (Proteintech Cat. 10783-1-AP), anti-Bax (Sangon Biotech Cat. D197138), anti-Cyto-C (Servicebio Cat. GB11080), anti-Caspase 3 (Servicebio Cat. GB11767C), anti-VDAC1 (Sangon Biotech Cat. D124100) and anti-ACTB (Sangon Biotech Cat. D110001).

2.6 Cell proliferation and metabolic levels

Following trypsin digestion, MDCK cells in the logarithmic phase were collected and then washed thrice with PBS. Approximately, 2.5 × 105 cells were seeded into T25 flasks and cultured at 37°C under 5% CO2. Thereafter, the medium composition and the cell count were recorded at 0, 12, 24, 36, 48, 60, 72, 84, 96, 108, and 120 h following inoculation. The cell growth and metabolic curves were drawn with the average value of three repetitions for each group of cells.

2.7 Cell migration assay

MDCK cells in the logarithmic phase were collected and washed as described above. 2 × 104 cells were seeded into Incucyte Woundmaker 96-well Rinse Boat Assemblies (Sartorius) and cultured with Incucyte® SX5 Live-Cell Analysis System at 37°C under 5% CO2. Once the cells reached 100% confluence, Incucyte Woundmaker Tool (Cat.No. 4563) was used to make a scratch. After washing with PBS, images were collected at 2h intervals and measured with Image J to calculate the width.

2.8 Apoptosis assay

MDCK cells in the logarithmic phase were collected and washed as described above. Approximately, 1 × 106 cells were resuspended in the binding buffer, followed by a 15 min incubation with Annexin V-APC and propidium iodide (PI) in the dark at ambient temperature using the Annexin V-APC/PI Apoptosis assay kit (Procell) and detected using flow cytometry.

2.9 Mitochondrial isolation

The collected MDCK cells were rinsed twice with prechilled PBS. Next, 1 mL of cytoplasm extraction buffer (1 μL protease inhibitor, 5 μL phosphatase inhibitor, and 1 μL DTT added before use) was added. The cells were homogenized 50 times on ice using a homogenizer to obtain the cell fragmentation rate more than 90% exanimated under microscopy. Mitochondria were precipitated via centrifugation at 12000 rpm for 30 min at 4°C. Subsequently, the precipitate was resuspended with 100 μL of cytoplasm extraction buffer for 30s and centrifuged again at 12000 rpm for 10 min at 4°C, and the supernatant was discarded. Mitochondrial lysis buffer was added to the precipitate and left on ice for 30 min, followed by centrifugation at 12000 rpm for 10 min at 4°C the mitochondrial supernatant was collected.

2.10 Tumor xenograft studies

The 4-7-week-old female nude mice were classified into four groups (Each group consisted of 10 animals): the positive control group injected with 1 × 106 HeLa cells per mouse; the negative control group injected with 1 × 106 2BS cells per mouse; the control group injected with 1 × 107 WT MDCK cells per mouse; the experimental group injected with 1 × 107 BY-02 cells per mouse. The cells with ≥90% viability were suspended in prechilled PBS and followed with subcutaneous injection on the back of the mouse. Mouse body weight was monitored during the experiment, and the tumor volume was monitored using caliper measurements every three days. The following criteria are used as humane endpoints: Animals that meet any of the above criteria are considered dying, are considered dead in the count of surviving animals, and are killed after anesthesia using physical methods of cervical dislocation. 1)The weight loss of mice reached 20% of the original body weight. 2)Tumor growth exceeds 10% of the animal’s original body weight or average diameter exceeds 20 mm in adult mice. 3)Symptoms of ulceration, necrosis, or infection appear on the surface of the tumor. 4)Failure to respond to appropriate intervention, including lethargy, inability to eat or drink (within 24 hours). Once any animal reached endpoint criteria, the amount of time elapsed before euthanasia was <12 hours. A total of 40 animals were used in the tumor xenotransplantation study, of which 20 met the endpoint criteria. Anesthesia method: Inhalation anesthesia. Anesthetic name: Isoflurane. Method of execution: Cervical dislocation and death.

2.11 RNA sequencing of the transcriptional profile of MDCK cells

Total RNA was extracted from WT cells and BY-02 cells and sent to Sangon Biotech (Shanghai) for RNA sequencing. The main processes included: raw data quality control, transcriptome assembly, gene annotation, expression level analysis, expression difference analysis, and gene enrichment analysis.

2.12 Statistical analysis

Data were represented as mean ±SEM and analyzed using GraphPad Prism 9.0. An unpaired t-test was used for comparisons between the two groups. * p<0.05, ** p<0.01, and *** p<0.001 represented statistically significant differences.

3. Result

3.1 Construction of MDCK cell strain with Bcl-xL deficiency

The already-validated CRISPR system to make homozygous deletion in MDCK cells was employed [23]. To achieve complete deficiency, we formulated the “targeting the key domain structure plus frame shift mutations” strategy. Bcl-xL contains four BH (Bcl-2 homology) domains which have a critical effect on the tertiary structure. Besides, the BH1–BH3 domains form the hydrophobic pocket that interacts with other BH3 domain in proapoptotic proteins to exert an anti-apoptotic function [24]. A gRNA sequence was selected to target the BH3 domain sequence located closer to the start codon on exon-1, which could create the premature appearance of a termination codon with a frame-shift mutation (Fig 1A). It was obtained a MDCK cell clone with Bcl-xL homozygous deletion, MDCK-Bcl-xL-/- named as BY-02. BY-02 cells were determined with Bcl-xL transcription and protein expression levels. RT-PCR analysis (Fig 1B) showed a marked decrease in the Bcl-xL mRNA expression levels in BY-02 cells, and western blot analysis (Fig 1C) showed no Bcl-xL specific band. This indicated that Bcl-xL had been completely and successfully knocked out.

thumbnail
Fig 1. The targeting strategies, qRT-PCR, and western bolt to verify BY-02 cells.

(A) The BH3 sequence of bcl-xl was replaced by the puromycin resistance gene sequence (puro). LA/RA represents upstream and downstream homologous sequences, and yellow marks the substituted BH3 sequence and puro sequence, respectively. The loxP fragment contains stop codons that prematurely terminate protein translation. (B) Protein level of Bcl-xL in BY-02 cells was determined by Western blotting, and ACTB was used as an internal control protein. (C) qRT-PCR analysis on bcl-xl mRNA expression in WT and BY-02 cells. The experimental data are expressed as "mean ± standard deviation". *P < 0.05 and **P < 0.01 indicate significant differences, and ***P < 0.001 indicates extremely significant differences. Data are representative of at least three independent experiments.

https://doi.org/10.1371/journal.pone.0311069.g001

3.2 Bcl-xL deficiency inhibited MDCK cell proliferation and migration in vitro

To ascertain the impact of Bcl-xL on MDCK cell proliferation and migration, the growth curve of BY-02 cells was first plotted using cell counts (Fig 2A). A decrease in the proliferative activity of BY-02 cells was observed compared to WT cells, extending the doubling time from 17.56 to 23.43 hours. The cell culture medium’s supernatant was analyzed at 12-hour intervals (Fig 2B–2H), revealing that both BY-02 and control cells rapidly metabolized glucose, producing lactate and ammonium ions without significantly altering salt ion (potassium, sodium, and calcium) concentrations. Further experiments, including plate clonogenesis and scratch tests (Fig 2I and 2J), were conducted. These tests demonstrated that the BY-02 cells had a considerable reduction in the clonogenic ability (Fig 2K) and a decrease in cell migration rate by approximately 10% compared to WT cells (Fig 2L). These findings showed that Bcl-xL deficiency markedly inhibited the proliferation and migration of MDCK cells in vitro, indicating Bcl-xL could play a role in reducing tumor formation capacity in MDCK cells in vivo.

thumbnail
Fig 2. Differences in growth, metabolism and migration of BY-02 cells compared with WT cells.

(A) WT and BY-02 cells were counted at 12h intervals to detect differences in cell proliferation. (B-H) The metabolic capacity of WT and BY-02 cells was measured at 12h intervals. (I,K) The effect of Bcl-xL depletion on colony formation rate of MDCK cells. (J,L) The effect of Bcl-xL deletion on MDCK cell migration was detected by scratch assay. The experimental data are expressed as "mean ± standard deviation". *P < 0.05 and **P < 0.01 indicate significant differences, and ***P < 0.001 indicates extremely significant differences. Data are representative of at least three independent experiments.

https://doi.org/10.1371/journal.pone.0311069.g002

3.3 Inhibition of tumorigenicity in BY-02 cells

The previous in vitro experiments confirmed that Bcl-xL deletion affected the proliferation and migration in MDCK cells. The tumorigenic ability of WT and BY-02 cells was next evaluated in vivo through xenografts performed in nude mice. 1 × 107 cells were inoculated into the posterior neck of nude mice, and the tumors were dissected four months after inoculation (Fig 3A). Subcutaneous tumors were observed in all ten mice which received WT cell injections. In contrast, only one of ten mice which received BY-02 cell injections developed subcutaneous tumor (Fig 3B) even with a significant reduction in tumor size compared to the WT group (Fig 3C). All mice underwent dissection, and the major tissues (heart, liver, spleen, lung, and kidney) as well as tumors were sectioned and stained with hematoxylin & eosin for pathological analysis (Fig 3D).

thumbnail
Fig 3. Effect of Bcl-xl on the tumorigenicity of MDCK cells in nude mice.

(A) After subcutaneous injection of WT and BY-02 cells into the posterior neck of nude mice, nude mice formed tumors. BY-02 cells showed lower tumorigenicity than WT cells. (B) Statistical results of subcutaneous tumor number in nude mice. In 10 mice, WT cells formed 100% tumors, while BY-02 cells only formed tumors in one mouse. (C) Tumor volume comparison. The tumor volume formed by BY-02 cells in nude mice was much smaller than that of WT cells. (D) Histological observation of heart, liver, spleen, lung, kidney and tumor of nude mice 100 days after subcutaneous injection of WT and BY-02 cells (H&E staining). Myocardial cells showed vacuoles in the cytoplasm (blue arrows), hydropic degeneration of the cells, swelling of the cells, loose and pale staining of the cytoplasm (purple arrows), infiltration of lymphocytes and neutrophils (black arrows), and focal necrosis (green arrows) with a small amount of congestion (yellow arrows) in the tissue.

https://doi.org/10.1371/journal.pone.0311069.g003

The control group after injection of WT cells, Cardiac tissue exhibited an increased number of cytoplasmic vacuoles. Most hepatocyte samples displayed degeneration and necrosis, accompanied by inflammatory cell infiltration. Most of the samples showed few cells surrounding the central artery of the spleen’s white pulp. Lymphocytes and neutrophils infiltrated lung tissue, and the alveolar wall displayed slight thickening. There was an increased number of samples with renal tissue congestion, and a small number of samples showed hydropic degeneration of renal tubular epithelial cells. Tumor tissue exhibited large columnar or cuboidal cells arranged in a glandular tubular pattern, with extensive areas of necrosis observed in most samples. In contrast, mice injected with BY-02 cells showed no severe symptoms and were in good condition. These findings indicated that the knockout of Bcl-xL inhibited the formation of tumors in nude mice by MDCK cells and MDCK cell tumor metastasis did not occur within 100 days following injection.

3.4 Bcl-xL deficiency promoted MDCK cell apoptosis through the mitochondrial pathway

Bcl-xL belongs to the Bcl-2 protein family and plays an anti-apoptotic role. Its deficiency leads to increased apoptosis levels [25]. Annexin V and PI double staining was used to detect the degree of apoptosis in this test. It worked as following when apoptosis occurs, phosphatidylserine on the internal cell membrane binds to Annexin V and PI will stain the late apoptotic and necrotic cells. It showed the apoptosis rate of BY-02 cells reached 40% (compared to WT cells) as analyzed by flow cytometry (Fig 4A). The proteins involved in the mitochondrial apoptotic pathway (Fig 4B) were examined, which showed that the internal balance of cells was disrupted following Bcl-xL loss. Western-blotting analysis revealed the expression level of proapoptotic protein Bax was upregulated and a significant increase in the amount of cytochrome C in BY-02 cells. ELISA showed an approximately two-fold increase in the amount of cytochrome C secreted into the supernatant (Fig 4C). Next, mitochondria were extracted from the cells to detect changes in Bax level in the mitochondria and cytoplasm. The results showed that the deletion of Bcl-xL increased the localization of Bax in the mitochondria in BY-02 cells (Fig 4D). Altogether, the loss of Bcl-xL initiated the mitochondrial apoptotic pathway and was critical for the increased apoptotic rate in BY-02 cells.

thumbnail
Fig 4. Effect of Bcl-xL on proteins involved in the apoptotic pathway of MDCK cells.

(A) The level of apoptosis in BY-02 cells was analyzed by flow cytometry. The horizontal axis represents Annexin V-APC and the vertical axis represents PI. (B) Effect of Bcl-xL deficiency on apoptotic signaling pathways. ACTB protein was used as an internal control protein. (C) Cytochrome C content in the cell supernatant of WT and BY-02 cells. (D) The pro-apoptotic protein Bax content differed between WT and BY-02 cells in the cytoplasm and mitochondria. ACTB was used as a cytosolic reference protein and VDAC as a mitochondrial reference protein. Data are representative of at least three independent experiments.

https://doi.org/10.1371/journal.pone.0311069.g004

3.5 Bioinformatics analysis of differentially expressed genes in BY02 cells

To further validate the tumor resistance of BY-02 cells in vitro and in vivo, the transcriptional level differences between BY-02 and WT cells were evaluated BY transcriptomics. DEGseq was used for differential analysis, A fold change >2 and a P value < 0.05 were used as the screening criteria for significant differential expression. In BY-02 cells, 687 genes were up-regulated and 260 genes were down-regulated (Fig 5A). The differential gene expression clustering heatmap showed that the trend of gene transcription levels was the same in the three replicate samples of the same cell, and there were significant differences in gene transcription levels between BY-02 and WT cells (Fig 5B). GO and KEGG analysis of differential genes showed that there were enrichment changes in cell migration and movement, angiogenesis and development, extracellular matrix components, signal transduction and cell structure (Fig 5C). Enrichment analysis BY KEGG database showed that BY-02 cells mainly showed enrichment changes in related tumor signaling pathways and metabolism-related pathways (Fig 5D). All these results point to the conclusion that Bcl-xL acts as a tumorigenic key gene in MDCK cells to promote their survival and development, and targeting Bcl-xL to inhibit its function is an effective solution to solve the tumorigenicity of MDCK cells.

thumbnail
Fig 5. Analysis and comparison of transcriptome data between WT and BY-02 cells.

(A) Volcano plots represent the significance and magnitude of changes in gene transcript levels between MDCK WT and BY-02 cells. Genes with significant differences are marked in red and green. Red represents upregulation and green represents downregulation. (B) Heat map of significantly altered proteins between WT and BY-02 cells. Color key indicates the relative abundance of proteins. (C) Differentially expressed genes between WT and BY-02 cells were subjected to GO enrichment analysis and classified into different categories based on biological process (BP), cellular component (CC), and molecular function (MF). (D) The effects of differential genes in the corresponding pathways in WT and BY-02 cells were analyzed.

https://doi.org/10.1371/journal.pone.0311069.g005

4. Discussion

The rapid outbreak of SARS-CoV-2 underscores a significant challenge in vaccine development: the time and cost associated with production and preparation. Influenza, a disease that can spread between animals and humans, is no longer suitable for vaccine production using traditional egg-based methods. The World Health Organization supports the establishment of a new approach for influenza vaccine production, and the use of MDCK cell culture presents an attractive and alternative solution for influenza vaccine manufacturing. This method offers advantages, including the use of a cell bank capable of rapid exponential expansion and a stable virus passage without mutation. Influenza vaccines produced with MDCK cells are available in multiple countries. As a novel production cell line, the safety evaluation of MDCK cells holds significant importance, with a key focus on their potential for high tumorigenicity [13].To supply the demand, a MDCK cell strain with Bcl-xL deficiency, BY-02 was created in this work, which showed markable reduction of tumorigenicity in vivo.

Apoptosis plays a vital role in inhibiting tumorigenesis, and resistance to apoptosis is a defining characteristic of cancer. Mechanisms that enable cells to escape apoptosis are generally categorized as follows: (1) disruption of the balance between pro- and anti-apoptotic proteins, (2) reduced caspase activity, and (3) impaired death receptor signal transmission. The Bcl-2 protein family, comprising both pro- and anti-apoptotic proteins, holds great importance in regulating apoptosis, primarily at the mitochondrial level [26]. Dysregulated apoptosis in affected cells often results from an imbalance between anti- and pro-apoptotic proteins within the Bcl-2 family. This imbalance may involve the upregulation of at least one anti-apoptotic protein, the downregulation of at least one pro-apoptotic protein, or a combination of both [27]. Raffo et al. revealed that overexpression of Bcl-2 protects prostate cancer cells from apoptosis [28]. Fulda et al. found that Bcl-2 overexpression inhibits TRAIL-mediated apoptosis in neuroblastoma, breast cancer, and glioblastoma cells [29]. The dynamic balance between antiapoptotic and proapoptotic proteins is required to maintain homeostasis and cell survival [30]. After the cells are stimulated, Bax (the proapoptotic protein) is cloned into the mitochondrial outer membrane, which changes the mitochondrial permeability and releases cytochrome C to the cytoplasm [31] and activates Caspase 3, leading to the caspase cascade reaction and induction of apoptosis [32]. Overexpression of Bcl-xL can lead to the resistance of chondrosarcoma cells to conventional chemotherapy [33], which also occurs in colon cancer [34], liver cancer [35], and non-Hodgkin’s lymphoma [36]. Upregulation of Bcl-xL is linked to the multidrug-resistant nature of tumor cells, which hinders apoptosis [37].

Several studies have also shown that knocking down genes that encode anti-apoptotic proteins in the Bcl-2 family can increase apoptosis. For instance, pro-apoptotic and anti-proliferative effects of Bcl-2-specific siRNA have been observed in pancreatic cancer cells [38]. Thus, inhibiting anti-apoptotic proteins in the Bcl-2 family presents a feasible approach to preventing tumorigenesis. The strategy of this study was trying to promote apoptosis of MDCK cells to reduce tumorigenicity through knocking out anti-apoptotic gene bcl-xl using CRISPR-Cas9 system. MDCK cell lines with homozygous deletion of Bcl-xL were successfully screened using puromycin resistance tags. Compared with the WT MDCK cells, Bcl-xL knockout MDCK cells exhibited significantly decreased proliferation, colony formation, and migration ability. Flow cytometry analysis with Annexin V/PI staining suggested that Bcl-xL was crucial for MDCK cell apoptosis as deletion of Bcl-xL dramatically increased the level of apoptosis, which was 40% higher than that of WT MDCK cells. Further examination of the effect of Bcl-xL depletion on the key proteins related to the mitochondrial apoptotic pathway revealed that pro-apoptotic protein Bax was upregulated, and the downstream molecule cytochrome C was also detected in the cytoplasm and the supernatant. Simultaneously, the cleavage of apoptosis execution protein, Caspase 3, into the active fragment initiated apoptosis. Besides, Bax was translocated to the mitochondrial membrane in the absence of Bcl-xL, which was consistent with the previous reports that Bax aggregated on the mitochondrial membrane to produce cytochrome C by increasing membrane permeability, and induced apoptosis [39]. These results indicate that deletion of Bcl-xL be able to induce apoptosis in MDCK cells. Our subsequent studies showed that Bcl-xL deficiency remarkably suppressed carcinogenesis in MDCK cells with almost no tumorigenicity observed in nude mice. This indicated that a lack of Bcl-xL was able to inhibit MDCK cells from forming tumors.

Several years of research indicate that to overcome the limitations of chick embryo culture, the use of cell culture technology to isolate vaccine strains and produce vaccines is ideal. Currently, improving the virus titer and reducing the tumorigenicity of MDCK cells are the main directions to modify MDCK cells as a vaccine-producing strain. Thus, genetic engineering is expected to be a powerful tool for screening newly engineered cell strans. In short, this study provides a possible direction for the modification of MDCK cells with low tumorigenicity and lays a foundation for the construction of safer and more reliable cell lines.

References

  1. 1. Iuliano A.D., Roguski K.M., Chang H.H., Muscatello D.J., Palekar R., Tempia S., et al. (2018). Estimates of global seasonal influenza-associated respiratory mortality: a modelling study. Lancet 391, 1285–1300. pmid:29248255
  2. 2. de Francisco Shapovalova N., Donadel M., Jit M., and Hutubessy R. (2015). A systematic review of the social and economic burden of influenza in low- and middle-income countries. Vaccine 33, 6537–6544. pmid:26597032
  3. 3. Steinhauer D.A., and Holland J.J. (1987). Rapid evolution of RNA viruses. Annu Rev Microbiol 41, 409–433. pmid:3318675
  4. 4. Zost S.J., Parkhouse K., Gumina M.E., Kim K., Diaz Perez S., Wilson P.C., et al. (2017). Contemporary H3N2 influenza viruses have a glycosylation site that alters binding of antibodies elicited by egg-adapted vaccine strains. Proc Natl Acad Sci U S A 114, 12578–12583. pmid:29109276
  5. 5. Chen Z., Aspelund A., and Jin H. (2008). Stabilizing the glycosylation pattern of influenza B hemagglutinin following adaptation to growth in eggs. Vaccine 26, 361–371. pmid:18079027
  6. 6. Schild G.C., Oxford J.S., de Jong J.C., and Webster R.G. (1983). Evidence for host-cell selection of influenza virus antigenic variants. Nature 303, 706–709. pmid:6190093
  7. 7. Ortiz de Lejarazu-Leonardo R., Montomoli E., Wojcik R., Christopher S., Mosnier A., Pariani E., et al. (2021). Estimation of Reduction in Influenza Vaccine Effectiveness Due to Egg-Adaptation Changes-Systematic Literature Review and Expert Consensus. Vaccines (Basel) 9, 1255. pmid:34835186
  8. 8. Tobita K., Sugiura A., Enomote C., and Furuyama M. (1975). Plaque assay and primary isolation of influenza A viruses in an established line of canine kidney cells (MDCK) in the presence of trypsin. Med Microbiol Immunol 162, 9–14. pmid:1214709
  9. 9. Donis R.O., Influenza Cell Culture Working Group, Davis C.T., Foust A., Hossain M.J., Johnson A., et al. (2014). Performance characteristics of qualified cell lines for isolation and propagation of influenza viruses for vaccine manufacturing. Vaccine 32, 6583–6590. pmid:24975811
  10. 10. Leighton J., Brada Z., Estes L.W., and Justh G. (1969). Secretory activity and oncogenicity of a cell line (MDCK) derived from canine kidney. Science 163, 472–473. pmid:5762397
  11. 11. Stiles C.D., Desmond W., Chuman L.M., Sato G., and Saier M.H. (1976). Growth control of heterologous tissue culture cells in the congenitally athymic nude mouse. Cancer Res 36, 1353–1360. pmid:1260760
  12. 12. Rindler M.J., Chuman L.M., Shaffer L., and Saier M.H. (1979). Retention of differentiated properties in an established dog kidney epithelial cell line (MDCK). J Cell Biol 81, 635–648. pmid:222773
  13. 13. Medema J.K., Meijer J., Kersten A.J., and Horton R. (2006). Safety assessment of Madin Darby canine kidney cells as vaccine substrate. Dev Biol (Basel) 123, 243–250; discussion 265–266. pmid:16566450
  14. 14. Park H.-A., Licznerski P., Alavian K.N., Shanabrough M., and Jonas E.A. (2015). Bcl-xL is necessary for neurite outgrowth in hippocampal neurons. Antioxid Redox Signal 22, 93–108. pmid:24787232
  15. 15. Hughes P., Bouillet P., and Strasser A. (2006). Role of Bim and other Bcl-2 family members in autoimmune and degenerative diseases. Curr Dir Autoimmun 9, 74–94. pmid:16394656
  16. 16. Kerr J.F., Winterford C.M., and Harmon B.V. (1994). Apoptosis. Its significance in cancer and cancer therapy. Cancer 73, 2013–2026. pmid:8156506
  17. 17. King K.L., and Cidlowski J.A. (1998). Cell cycle regulation and apoptosis. Annu Rev Physiol 60, 601–617. pmid:9558478
  18. 18. Elmore S. (2007). Apoptosis: A Review of Programmed Cell Death. Toxicol Pathol 35, 495–516. pmid:17562483
  19. 19. Cory S., and Adams J.M. (2002). The Bcl2 family: regulators of the cellular life-or-death switch. Nat Rev Cancer 2, 647–656. pmid:12209154
  20. 20. Leibowitz B., and Yu J. (2010). Mitochondrial signaling in cell death via the Bcl-2 family. Cancer Biol Ther 9, 417–422. pmid:20190564
  21. 21. Lee E.F., Harris T.J., Tran S., Evangelista M., Arulananda S., John T., et al. (2019). BCL-XL and MCL-1 are the key BCL-2 family proteins in melanoma cell survival. Cell Death Dis 10, 342. pmid:31019203
  22. 22. Brotin E., Meryet-Figuière M., Simonin K., Duval R.E., Villedieu M., Leroy-Dudal J., et al. (2010). Bcl-XL and MCL-1 constitute pertinent targets in ovarian carcinoma and their concomitant inhibition is sufficient to induce apoptosis. Int J Cancer 126, 885–895. pmid:19634140
  23. 23. Le Y., Zhang J., Gong Z., Zhang Z., Nian X., Li X., et al. (2023). TRAF3 deficiency in MDCK cells improved sensitivity to the influenza A virus. Heliyon 9, e19246. pmid:37681145
  24. 24. Lee E.F., and Fairlie W.D. (2019). The Structural Biology of Bcl-xL. Int J Mol Sci 20, 2234. pmid:31067648
  25. 25. Varin E., Denoyelle C., Brotin E., Meryet-Figuière M., Giffard F., Abeilard E., et al. (2010). Downregulation of Bcl-xL and Mcl-1 is sufficient to induce cell death in mesothelioma cells highly refractory to conventional chemotherapy. Carcinogenesis 31, 984–993. pmid:20142415
  26. 26. Gross A., McDonnell J.M., and Korsmeyer S.J. (1999). BCL-2 family members and the mitochondria in apoptosis. Genes Dev 13, 1899–1911. pmid:10444588
  27. 27. Wong R.S.Y. (2011). Apoptosis in cancer: from pathogenesis to treatment. J Exp Clin Cancer Res 30, 87. pmid:21943236
  28. 28. Raffo A.J., Perlman H., Chen M.W., Day M.L., Streitman J.S., and Buttyan R. (1995). Overexpression of bcl-2 protects prostate cancer cells from apoptosis in vitro and confers resistance to androgen depletion in vivo. Cancer Res 55, 4438–4445. pmid:7671257
  29. 29. Fulda S., Meyer E., and Debatin K.-M. (2002). Inhibition of TRAIL-induced apoptosis by Bcl-2 overexpression. Oncogene 21, 2283–2294. pmid:11948412
  30. 30. Hafezi S., and Rahmani M. (2021). Targeting BCL-2 in Cancer: Advances, Challenges, and Perspectives. Cancers (Basel) 13, 1292. pmid:33799470
  31. 31. Saelens X., Festjens N., Vande Walle L., van Gurp M., van Loo G., and Vandenabeele P. (2004). Toxic proteins released from mitochondria in cell death. Oncogene 23, 2861–2874. pmid:15077149
  32. 32. Xiong S., Mu T., Wang G., and Jiang X. (2014). Mitochondria-mediated apoptosis in mammals. Protein Cell 5, 737–749. pmid:25073422
  33. 33. de Jong Y., Monderer D., Brandinelli E., Monchanin M., van den Akker B.E., van Oosterwijk J.G., et al. (2018). Bcl-xl as the most promising Bcl-2 family member in targeted treatment of chondrosarcoma. Oncogenesis 7, 74. pmid:30242253
  34. 34. Scherr A.-L., Gdynia G., Salou M., Radhakrishnan P., Duglova K., Heller A., et al. (2016). Bcl-xL is an oncogenic driver in colorectal cancer. Cell Death Dis 7, e2342. pmid:27537525
  35. 35. Shimizu S., Takehara T., Hikita H., Kodama T., Miyagi T., Hosui A., et al. (2010). The let-7 family of microRNAs inhibits Bcl-xL expression and potentiates sorafenib-induced apoptosis in human hepatocellular carcinoma. J Hepatol 52, 698–704. pmid:20347499
  36. 36. Hernandez-Luna M.A., Rocha-Zavaleta L., Vega M.I., and Huerta-Yepez S. (2013). Hypoxia inducible factor-1α induces chemoresistance phenotype in non-Hodgkin lymphoma cell line via up-regulation of Bcl-xL. Leuk Lymphoma 54, 1048–1055. pmid:23013270
  37. 37. Minn A.J., Rudin C.M., Boise L.H., and Thompson C.B. (1995). Expression of bcl-xL can confer a multidrug resistance phenotype. Blood 86, 1903–1910. pmid:7655019
  38. 38. Ocker M., Neureiter D., Lueders M., Zopf S., Ganslmayer M., Hahn E.G., et al. (2005). Variants of bcl-2 specific siRNA for silencing antiapoptotic bcl-2 in pancreatic cancer. Gut 54, 1298–1308. pmid:16099798
  39. 39. Gross A., Jockel J., Wei M.C., and Korsmeyer S.J. (1998). Enforced dimerization of BAX results in its translocation, mitochondrial dysfunction and apoptosis. EMBO J 17, 3878–3885. pmid:9670005