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Can the post-ruminal urea release impact liver metabolism, and nutritional status of beef cows at late gestation?

  • Marta M. Santos,

    Roles Conceptualization, Formal analysis, Investigation, Methodology, Visualization, Writing – original draft, Writing – review & editing

    Affiliations Department of Animal Science, Universidade Federal de Viçosa, Viçosa, MG, Brazil, Muscle Biology, and Nutrigenomics Laboratory, Universidade Federal de Viçosa, Viçosa, MG, Brazil

  • Thaís C. Costa,

    Roles Data curation, Formal analysis, Methodology, Software, Visualization, Writing – review & editing

    Affiliations Muscle Biology, and Nutrigenomics Laboratory, Universidade Federal de Viçosa, Viçosa, MG, Brazil, Department of Animal Science, Universidade Federal de Lavras, Lavras, MG, Brazil

  • Tiago A. O. Mendes,

    Roles Data curation, Formal analysis, Methodology, Software, Validation, Visualization, Writing – review & editing

    Affiliation Department of Biochemistry, and Molecular Biology, Universidade Federal de Viçosa, Viçosa, MG, Brazil

  • Luana L. Dutra,

    Roles Formal analysis, Methodology

    Affiliation Department of Biochemistry, and Molecular Biology, Universidade Federal de Viçosa, Viçosa, MG, Brazil

  • Davi N. L. Silva,

    Roles Investigation, Methodology

    Affiliations Department of Animal Science, Universidade Federal de Viçosa, Viçosa, MG, Brazil, Muscle Biology, and Nutrigenomics Laboratory, Universidade Federal de Viçosa, Viçosa, MG, Brazil

  • Renato D. Araújo,

    Roles Investigation, Methodology

    Affiliations Department of Animal Science, Universidade Federal de Viçosa, Viçosa, MG, Brazil, Muscle Biology, and Nutrigenomics Laboratory, Universidade Federal de Viçosa, Viçosa, MG, Brazil

  • Nick V. L. Serão,

    Roles Data curation, Formal analysis, Methodology, Validation, Visualization, Writing – review & editing

    Affiliation StatsGaze Data Science Solutions, Liverpool, NY, United States of America

  • Luciana N. Rennó,

    Roles Investigation, Methodology, Writing – review & editing

    Affiliation Department of Animal Science, Universidade Federal de Viçosa, Viçosa, MG, Brazil

  • Yamê F. R. S. Silva,

    Roles Formal analysis, Methodology, Writing – review & editing

    Affiliation Department of Animal Science, Universidade Federal de Viçosa, Viçosa, MG, Brazil

  • Edenio Detmann,

    Roles Conceptualization, Data curation, Investigation, Methodology, Visualization, Writing – review & editing

    Affiliation Department of Animal Science, Universidade Federal de Viçosa, Viçosa, MG, Brazil

  • Javier Martín-Tereso,

    Roles Investigation, Methodology, Resources, Writing – review & editing

    Affiliation Trouw Nutrition Research & Development, Amersfoort, The Netherlands

  • Isabela P. Carvalho,

    Roles Conceptualization, Methodology, Resources, Writing – review & editing

    Affiliation Trouw Nutrition Research & Development, Amersfoort, The Netherlands

  • Mateus P. Gionbelli,

    Roles Conceptualization, Data curation, Investigation, Methodology, Supervision, Validation, Writing – review & editing

    Affiliation Department of Animal Science, Universidade Federal de Lavras, Lavras, MG, Brazil

  • Marcio S. Duarte

    Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Validation, Writing – review & editing

    mduarte@uoguelph.ca

    Affiliation Department of Animal Biosciences, University of Guelph, Guelph, ON, Canada

Abstract

We aimed to evaluate the effects of post-ruminal supply of urea (PRU) on nutritional status, and liver metabolism of pregnant beef cows during late gestation. Twenty-four Brahman dams, pregnant from a single sire, and weighing 545 kg ± 23 kg were confined into individual pens at 174 ± 23 d of gestation, and randomly assigned into one of two dietary treatments up to 270 d of gestation: Control (CON, n = 12), consisting of a basal diet supplemented with conventional urea, where the cows were fed with diets containing 13.5 g conventional urea per kg dry matter; and PRU (PRU, n = 12), consisting of a basal diet supplemented with a urea coated to extensively prevent ruminal degradation while being intestinally digestible, where the cows were fed with diets containing 14,8 g urea protected from ruminal degradation per kg dry matter. Post-ruminal supply of urea reduced the urine levels of 3-methylhistidine (P = 0.02). There were no differences between treatments for dry matter intake (DMI; P = 0.76), total digestible nutrient (TDN) intake (P = 0.30), and in the body composition variables, such as, subcutaneous fat thickness (SFT; P = 0.72), and rib eye area (REA; P = 0.85). In addition, there were no differences between treatments for serum levels of glucose (P = 0.87), and serum levels of glucogenic (P = 0.28), ketogenic (P = 0.72), glucogenic, and ketogenic (P = 0.45) amino acids, neither for urea in urine (P = 0.51) as well as urea serum (P = 0.30). One the other hand, enriched pathways were differentiated related to carbohydrate digestion, and absorption, glycolysis, pyruvate metabolism, oxidative phosphorylation, pentose phosphate pathway, and biosynthesis of amino acids of the exclusively expressed proteins in PRU cows. Shifting urea supply from the rumen to post-ruminal compartments decreases muscle catabolism in cows during late gestation. Our findings indicate that post-ruminal urea supplementation for beef cows at late gestation may improve the energy metabolism to support maternal demands. In addition, the post-ruminal urea release seems to be able to trigger pathways to counterbalance the oxidative stress associated to the increase liver metabolic rate.

Introduction

In bovines, more than 50% of placental energy demand during the last third of gestation is supplied by amino acids [1]. The potential of fetal growth based on maternal fat reserves is low [2] due to the limited transport of fatty acids, and ketone bodies through the placenta [3]. Studies have shown changes in plasmatic regulators of protein catabolism, and nitrogen losses of ewes during the last third of gestation, suggesting nitrogen mobilization from maternal lean tissue [4,5] as an attempt to meet fetal requirements.

However, nitrogen (N) metabolism in ruminants also involve other high-priority functions, such as nitrogen recycling to the gastrointestinal tract [6]. Normally, urea synthesis is performed from cytoplasmatic, and mitochondrial N pools, where N atoms can be absorbed from both ammonia, and amino acids [7]. It has been demonstrated that urea supplementation can improve the efficiency of the utilization of amino acids in body anabolism [8]. Recently, it has been shown that supplementation with post-ruminal urea (PRU) release provides greater efficiency in nitrogen usage in rumen, and animal body due to greater, and more stable ruminal N recycling, greater uptake of recycled N by rumen microorganisms, decreased urinary-N loss, and improvement in fiber digestion when compared to the classical releasing of urea as pulse dose in the rumen [9,10]. In addition, the absorption of urea in the small intestine can avoid an overload of ammonia in the liver, which occurs after ruminal degradation of dietary urea [10].

Late gestation is a critical period for a pregnant dam [11] as the nutritional requirements are enhanced due to an increase in growth rate of the fetus, while the dry matter intake capacity by the cows is limited [12]. Thus, moving the release of dietary urea from the rumen to the intestinal tract may be strategically used to overcome the challenging nutritional conditions of pregnant cows at late gestation. Therefore, we aimed to evaluate the impact of shifting urea release from rumen to the intestinal tract at late gestation on liver metabolism, and nutritional status of pregnant cows at late gestation.

Materials and methods

Animal ethics

All experimental procedures were approved by the Ethical Committee on Animal Use of the Department of Animal Science at Universidade Federal de Viçosa, Minas Gerais, Brazil (protocol 33/2020).

Animals and experimental diets

Twenty-four Brahman dams, pregnant from a single sire, weighing 545 kg ± 23 kg, and 174 ± 23 d of gestation were confined at into individual pens with an area of 12 m2, and provided with bunkers, and water bowls. The twenty-four cows used in the trial were pulled from a herd that was submitted to a reproductive protocol using three attempts of fixed-time artificial insemination. Consequently, a total of three groups of cows according to days of gestation was obtained. Thus, at the beginning of the trial the cows within the gestational time groups were evenly allocated to the two experimental treatments. However, the endpoint of the trial was 270 days of gestation to all cows and thus, the gestation group (1 to 3) was considered as a fixed effect in the statistical model. All cows were initially submitted to an adaptation period of 10 d receiving water ad libitum, and diet containing corn silage, ground corn, soybean meal, and mineral mixture. After the adaptation period, the fetal sex was determined via ultrasound on every cow, and within each pregnancy group, and fetal sex combination, cows were randomly assigned into two experimental treatments up to 270 d of gestation: Control (CON, n = 12), where cows were fed a basal diet containing conventional urea; and PRU (PRU, n = 12), where cows were fed a basal diet containing urea protected from ruminal degradation to partially be released in the small intestine (Trouw Nutrition, Netherlands) (Table 1). The post-ruminal urea (PRU) product was subjected to an in vitro evaluation to estimate ruminal protection rate [13]. Approximately 35% of this urea is released into the rumen, and the remainder (65%) is released into the post-ruminal compartments. The dry matter intake was adjusted weekly to meet 100% maintenance requirements [14] based on the body weight, and gestational age.

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Table 1. Ingredients, and chemical composition of the experimental diets.

https://doi.org/10.1371/journal.pone.0293216.t001

Animal performance data, and sample collection

To evaluate the nutritional characteristics of the diet, samples of roughage, and concentrate were collected weekly, and stored at -20°C for further chemical analysis. To evaluate the total digestibility, the experiment was divided into three periods of 28 d each, and approximately 200 g of feces were sampled, via manual collection directly from the rectum, on the 17 d at 6 am, 18 d at 12 pm, and 19 d (at 6 pm, three hours after second feeding) of each experimental period. Simultaneously to fecal sample collection, approximately 50 ml of urine was sampled by stimulated urination. Immediately after sampling, 5 ml of urine was filtered, diluted in 20 ml of sulfuric acid (0.036 N), and stored at -20°C. Upon the third urine collection (collected at 19 d of the experimental period), the first two samples (previously collected at the 17 d, and 18 d of the experimental period) were thawed, and the three samples were mixed, and stored -20°C for further analyses for urea, and 3 methyl-histidine.

On the 28 d of each experimental period, cows’ blood samples were collected in the morning via jugular venipuncture into vacuum tubes (BD Vacutainer, NJ, USA) containing heparin to evaluate the amino acid profile, tubes containing sodium fluoride to evaluate the concentration of glucose, and tubes containing gel, and clot activator to evaluate the concentration of urea. Immediately after collection, the samples were sent to a commercial laboratory (Viçosa Lab, Viçosa, Brazil). Simultaneously with the blood collection, carcass ultrasound images were collected by using a Aloka SSD500 with a 3.5 Mhz 18 cm linear probe to monitor the body condition score of the cows. Images were captured and analyzed by using the Biosoft ToolBox for Bovine (Biotronics, Ames, Iowa, USA).

On the 54 d of the feeding trial, liver biopsies were performed using specific needles (Tru-Cut biopsy needle, Care Fusion Corporation, San Diego, California, USA), according to the procedures previously described [15]. The area between the 11th -12th rib was initially cleaned with 70% ethanol, and the incision was performed 10 min after local anesthesia treatment (Lidocaine 2%). Liver samples (~ 30 mg) from the right lobe were collected. Immediately after collection, the samples were rinsed with phosphate saline buffer (pH = 7.4) and immediately snap-frozen in liquid nitrogen, and kept at -80°C for further analysis.

Feed, and fecal samples chemical analysis

Samples of feeds, and feces were oven-dried (60°C), and ground in a Wiley mill model 3 (Thomas Scientific, NJ, USA) to pass through a 2- mm screen. After that, half of each ground sample was ground again to pass through a 1- mm screen. The fecal samples were pooled on an air-dry weight basis per day, and animal according to the periods of collection (equal weight for each collection time).

The samples ground to pass through a 1- mm screen sieve were used to perform the analyses of dry matter [16] (DM; method 934.01), crude protein [16] (CP; method 990.13), ether extract [16] (EE; method 920.39), ash [16] (method 942.05), neutral detergent fiber corrected for ash, and protein (NDFap; using a heat stable α-amylase omitting sodium sulfite; [17]; methods INCT-CA F-002/1; N-004/1, and M-002/1). The non-fibrous carbohydrates (NFC) were calculated as previously proposed [18]. In addition, the samples ground to pass a 2- mm screen sieve were incubated in quadruplicate in the rumen of two cows for 240 h using non-woven textile bags (100 g/m2) to quantify the indigestible NDF (iNDF) [19]. The fecal excretion of DM was estimated by using iNDF as an internal marker. We calculated the digestibility coefficients for the different feed components to assess the digestible energy intake, which was expressed in terms of total digestible nutrients (TDN).

Analysis of blood, and urinary parameters

In urine samples the concentrations of urea (Atellica Solution™, Siemens Healthineers, Erlangen, Forchheim, Germany), and 3 methyl-histidine (HPLC, Hermes Pardini, Belo Horizonte, Minas Gerais, Brazil) were determined. In blood samples, analyses of glucose (Cobas C311 analyzer, Roche Diagnostics, Rotkreuz, Switzerland), urea (Cobas C311 analyzer, Roche Diagnostics, Rotkreuz, Switzerland), and the amino acid profile were performed, and the following serum amino acids were quantified: glutamic acid, alanine, glycine, methionine, valine, citrulline, ornithine, leucine, phenylalanine, tyrosine, and isoleucine (LC-MS/MS, Xevo™ TQD, Waters Corporation, Milford, Massachusetts, USA).

Liver tissue protein extraction

Total proteins were extracted from 1 mg of tissue in a 1 mL of lysis buffer (7 M urea, 2 M thiourea, 4% 3-((3-cholamidopropyl) dimethylammonio)-1-propanesulfonate (CHAPS) detergent, 1% dithiothreitol (DTT), and 10 ul protease inhibitor cocktail (Sigma-Aldrich®, St. Louis, Missouri, USA), homogenized using a shaft-type homogenizer (LabGEN 125, Cole-Parmer, Bunker Hill, IL, USA), and then centrifuged at 10000 × g for 30 min at 4°C. The supernatant was collected, aliquoted, and stored at -80°C. Protein content was estimated by the Bradford Protein Assay (Bio-Rad, Hercules, CA, USA). After protein quantification, 50 μg of sample was transferred to 2.5 μL tuber containing 100 mM of DTT (1.4-dithiothreitol). The solution was then stirred, and placed in a thermal block at 60°C for 30 min. After reaching the room temperature, 2.5 μL of 300 mM iodoacetamide was added, for cysteine alkylation, and transferred to the dark at room temperature for 30 min. 10μL of trypsin (Promega Corporation, Madison, WI, USA) was added to an ammonium bicarbonate (Ambic) solution, vortexed, and digested overnight at 37°C. The samples were then dried using a SpeedVacTM centrifuge (Thermo Fisher Scientific, Waltham, MA, USA), resuspended in 50 μL of 0.1% trifluoroacetic acid (TFA) solution prepared in H2O milliQ, and desalted using ZipTip®C18 (Merck Millipore, Billerica, MA, USA).

Protein identification, and data processing

Protein identification, and quantification was performed in a NanoAquity high-performance liquid chromatographer (HPLC) coupled with a maXis 3G high-resolution Q-TOF mass spectrometer (Bruker Daltonics, Billerica, Massachusetts, USA). The raw data were processed with MaxQuant software (v. 1.6.3.3), with the parameters set to default values, considering the protein amino terminal acetylation, methionine oxidation as variable modification, and the fixed modification as carbamidomethylation of cysteine. The trypsin specificity was kept as the digestion mode, and the instrument selected was Bruker-QTOF, set to default, including the parameters of first (20 ppm), and main (10 ppm) search peptide tolerance. The label-free quantification (LFQ) mode was added, and at least two unique peptide ratios (min LFQ ratio count = 2) were considered. The bovine reference proteome was obtained from UniProt (ID: UP000009136) available in (www.uniprot.org, accessed on 23 March 2021). A total of 807 proteins were identified in the liver of cows.

Prior to normalization of the data, the processed proteomic abundance data were subjected to quality control. For this, samples (i.e., animals), and proteins identified as potential contaminants, only identified by site, and reverse sequence were removed from the dataset to avoid issues with the statistical analyses, and inferences. First, samples with less than 1% of the proteins identified were removed from the dataset. In this step, two samples (both from CON) were removed, resulting in a final dataset with 22 animals (10 from CON, and 12 from PRU) with proteomic data. Afterwards, PTNs represented in less than 10% of samples (i.e., in 2 or fewer samples) were removed. The final dataset included 382 proteins.

After quality control, the data were subjected to normalization of the library size. Normalizing factors were obtained for each protein using the Trimmed Mean of M-values method, via the TMM package [20] implemented in R (R Core Team, Vienna, Austria).

Statistical analyses

Analyses of data of animal performance, nutritional, and physiological blood characteristics.

Data from animal nutritional, and physiological blood parameters were analyzed according to the following model below: [Eq 1] where yijkl is the observed data for the lth cow; μ is the intercept; Ti is the fixed-effect of the ith Treatment (i = 1, 2); GGj is the fixed-effect of the jth Gestation Group (i = 1 to 3); and FSk is the fixed-effect of the kth Sex of the Fetus (k = 1, 2); b1 is the partial regression coefficient for the fixed-effect covariate of initial body weight; IWijkl is the initial body weight of the cow at the beginning of the feeding period (in kg) of the lth cow; and eijkl is the random error for the lth cow, assuming , where I is the identity matrix, and the residual variance. The covariate of initial body weight of the cow at the beginning of the feeding period in Eq 1 was kept in the model for traits when highly significant (P < 10−5).

Prior to analyses, residuals were evaluated for distributional assumptions. Studentized residuals outside ± 3 SD were removed, one at a time, while simultaneously assessing their homogeneity across fixed-effects with visual inspection, and their normality with Shapiro-Wilk’s test (P > 0.05) [21]. After removal of outliers, all the data showed normality, and homogeneity of the residual, and were subjected to subsequent final analyses. All analyses were performed using the GLIMMIX, and UNIVARIATE procedures of SAS 9.4 (Statistical Analysis System Institute, Inc., Cary, NC, USA). Significances were declared at P < 0.05, and trends were discussed when 0.10 < P ≤ 0.05.

Models evaluated for proteomic analysis.

Multiple distributions of the normalized data, and models were evaluated for each of the 382 proteins analyzed. In this step we evaluated Negative Binomial (NB) distributions assuming or not zero-inflated (ZI) data using a log-link function [22]. Therefore, two combinations were evaluated, one not assuming zero-inflation of the data (i.e., many samples without abundance for the protein analyzed), and referred to just as NB, and one assuming zero-inflation (ZINB).

For the NB model, the data were analyzed as: [Eq 2] where represents the natural logarithm of the normalized protein abundance analyzed adjusted for the normalized library size for the lth animal, and all other terms have been defined in Eq 1.

When assuming ZI data, we used three models where the count (i.e., non-ZI) part of the model was the same as in Eq 2, and the ZI part was different. The first ZI model (ZINBbasic) assumed only the intercept, as: [Eq 3] where μZI represents the intercept of the ZI part of the model, and all other terms have been previously described in Eq 2. In ZINBbasic, we assumed that over the presence of many zero in the data is only a function of the intercept.

In the other two models, Eq 3 was expanded to include the effects in Eq 1. First, only the effect of treatment was used (ZINBTRT): [Eq 4] where represents the ith fixed effect of Treatment (i = 1,2) in the ZI part of the model; and all other terms have been previously described in Eqs 1 and 2. The ZITRT model was used to evaluate whether the presence of many zero in the data could also be explained by the maternal treatment. Finally, the last model assumed the same effects in both the non-ZI, and ZI parts of the model (ZINBfull): [Eq 5] where represents the jth fixed-effect of Gestation Group (j = 1 to 3) in the ZI part of the model; represents the kth fixed-effect of Fetus Status (k = 1 to 3) in the ZI part of the model; and all other terms have been previously described in Eqs 2 to 4. With this, four models were evaluated for each protein. Analyses of all models were performed in SAS 9.4 (Statistical Analysis System Institute, Inc., Cary, NC, USA) with the GLIMMIX procedure.

Model selection and identification of differentially abundance proteins (DAPs).

The NB, ZINBbasic, ZINBTRT, and ZINBfull models were compared within each protein analyzed. Only models that converged were evaluated. Model comparisons followed a nested strategy, from the simplest (NB) to the most complex (ZINBfull) model using a likelihood ration test (LRT) to evaluate the inclusion of additional parameters into the model. That is, first, NB was compared to ZINBbasic, and if the LRT was not significant (P > 0.05), then the NB model was used for the protein. However, if the LRT between NB, and ZINBbasic was significant (P > 0.05), results from the ZINBbasic were compared with the ZINBTRT. Likewise, if the LRT test between these were significant (P < 0.05), then the ZINBTRT model was chosen, otherwise, ZINBbasic was used for the protein. Finally, if ZINBTRT was selected in place of ZINBbasic, it was then compared with ZINBfull to evaluate the best model for the protein analyzed. This process was used for each of the 382 proteins analyzed, and hence, the final results include different models, according to the protein.

After models were selected for each protein, effects in the model were deemed significant after adjusting P-values for multiple comparisons using False-Discovery Rate (FDR) [23] as q-values. Differentially abundant proteins (DAP) were identified at q-value < 0.05. The calculation of q-values was obtained with the qvalue package [24] in R version 3.6.3 [25] in RStudio version 3.0.386 [26].

Gene ontology (GO) and signaling pathways (KEGG) analyses.

The protein-protein interaction network, Kyoto Encyclopedia of Genes, Genomes (KEGG), and Gene Ontology (GO) enrichment analyses were performed by String 11.0 (string-db.org). The interaction network of the exclusive proteins from the treatments CON, PRU, and the DAPs were obtained using the available interaction map from Bos taurus with the default option (medium confidence given by score of 0.4) [27]. The functional classification of the GOs and KEGG signaling pathways were deemed significant at an FDR-adjusted P-value (PFDR) < 0.05 based on Benjamini-Hochberg’s method [28].

Results

Animal performance, digestibility, and blood parameters

There were no differences between treatments for dry matter intake (DMI; P = 0.99), total digestible nutrient (TDN) intake (P = 0.99). The digestibility variables, dry matter (P = 0.58), crude protein (P = 0.51), ether extract (P = 0.73), non-fiber carbohydrates (P = 0.68), neutral detergent fibre corrected for ash, and protein (P = 0.95) did not differ between treatments. In addition, there were no differences in body composition variables, such as subcutaneous fat thickness (SFT; P = 0.72), and rib eye area (REA; P = 0.85). The concentrations of urea in urine (P = 0.51), and serum (P = 0.30) were also not different among treatments. Similarly, no changes in serum levels of glucose (P = 0.87), and in glucogenic (P = 0.28), ketogenic (P = 0.72), glucogenic, and ketogenic (P = 0.45) amino acids were observed among treatments. Similarly, the maternal treatment did not influence (P = 0.59) the birth weight of the progeny. On the other hand, the levels of 3 methyl-histidine, in mmol/mol creatine, were higher (P = 0.02) in CON. Results are presented in Table 2.

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Table 2. Intake, digestibility, performance, urine, and serum parameters from treatment PRU, and CON.

https://doi.org/10.1371/journal.pone.0293216.t002

Proteomic profile of hepatic tissue

To identify the differentially abundant proteins (DAPs), the 382 proteins were tested. From these, 19 DAPs were identified (q-value < 0.05) between treatments, seven, and 12 proteins showing greater, and lower abundance in the PRU group compared to CON (Table 3). Among them, S-adenosylmethionine synthase isoform type 1 (MAT1A), methyl malonyl-CoA isomerase (MMUT), and persulfide dioxygenase (ETHE1) were more abundant in PRU compared to CON cows. On the other hand, the proteins apoptosis inducing factor mitochondrial associated (AIFM1), galectin-1 (LGALS1), and e lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex mitochondrial (DBT) were less abundant in PRU compared to CON cows.

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Table 3. Differentially abundant proteins (DAPs) in the hepatic tissue of the cow.

https://doi.org/10.1371/journal.pone.0293216.t003

Functional analysis of the differentially abundant proteins

The GO can be classified as biological processes, molecular function, and cellular components. The DAPs network showed biological processes related to sulfur amino acid metabolism (GO:0000096; PFDR = 0.02), and nitrate metabolic process (GO:0042126; PFDR = 0.02) upregulated in PRU compared to CON cows. The enriched molecular function related to catalytic activity (GO:0003824; PFDR < 0.03), and binding proteins (GO:0005488; PFDR < 0.03), showed up, and down-regulation in PRU compared to CON cows, respectively. Regarding the cellular components, mitochondrion term (GO:0005739; PFDR < 0.01) was upregulated in PRU compared to CON cows. The KEGG signaling pathways analysis identified the upregulation of fatty acids biosynthesis (WP1020; PFDR = 0.03), and metabolism of vitamin B12 (WP3193; PFDR = 0.04) in PRU compared to CON cows. Conversely, the apoptosis (bta04210; PFDR < 0.01), and FAS (WP1019; PFDR < 0.01) pathways were downregulated in PRU compared to CON cows.

Functional analysis of the exclusive protein

We found 280 and 83 exclusive proteins in the treatments PRU and CON, respectively. The protein-protein interaction network of proteins found to be exclusive in each treatment were significant (PRU: PFDR < 1.0e-16; CON: PFDR = 2.1e-7), indicating that the proteins are biologically connected.Due to the greater number of proteins found to be exclusively present in each treatment, we identified a variety of proteins which participate in pathways involved in nitrogen and energy metabolism that will be further emphasized in discussion section. The analysis of KEGG pathways from the exclusive proteins in treatment PRU indicate pathways of interest related to pentose phosphate pathway (PGD), pyruvate metabolism (DLAT, LDHA), glycolysis (ALDOA, PGAM1, PKLR), carbohydrate digestion, and absorption (ATP1A1, ATP1A4, ATP1A3, ATP1A2), cysteine, and methionine metabolism (MTAP, ADI1), and oxidative phosphorylation (NDUFA8, NDUFAB1, NDUFS1, NDUFV2, UQCRB, UQCRH, UQCRC1, COX72A, COX6B1, COX5B, MGC148714, ATP5D, ATP5F1, ATP5J, ATP5J2) (Table 4). For the proteins exclusively found in CON cows, KEGG analysis identified enriched pathways related to retinol (CYP1A2, CYP3A24, LOC100138004, UGT1A1), and tryptophan metabolism (CYP1A2, DLD, GCDH) (Table 4).

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Table 4. Enriched metabolic pathways of the exclusive proteins from treatment PRU, and CON.

https://doi.org/10.1371/journal.pone.0293216.t004

Discussion

Studies evaluating the post-ruminal urea supplementation have recently emerged [9,10,13], however, the effects of the post-ruminal supply of urea in cows during late gestation are not fully understood. Therefore, in the present study we evaluated the impact of shifting urea release from rumen to the intestinal tract at late gestation on liver metabolism, and nutritional status of pregnant cows at late gestation. To further explore the consequences of PRU supplementation in the metabolism, we employed a shot-gun proteomic approach, and a pathway analysis to identify the possible biological changes in the liver. We were able to identify the enhancement of S-adenosylmethionine synthase isoform type 1 (MAT1A) in PRU compared to CON cows. The protein MAT1A is involved in methionine metabolism, catalyzing the conversion of methionine into S-adenosylmethionine (SAM), which is demanded for the biosynthesis of polyamines, and glutathione (GSH) [29] (Fig 1). The proteins methylthioadenosine phosphorylase (MTAP), and acireductone dioxygenase 1 (ADI1), found to be exclusively expressed in PRU cows, are involved in methionine regeneration from the polyamines [30]. The polyamines (putrescine, spermidine, and spermine) are key regulators of placental angiogenesis, and embryo development [31]. During the process of methionine regeneration from polyamines, the sulfur of 5’-methylthioadenosine (MTA) is recycled, synthesizing acireductone through the action of the enzyme MTAP [32]. The acireductone is then converted into methionine through the reaction catalyzed by ADI1 [32]. Taken together, the proteins exclusively expressed in PRU cows indicate an enriched pathway of methionine regeneration from polyamines. Kwon [33] reported a greater concentration of polyamines in the first third of gestation in ovine due to the intensive placental development, accompanied by its reduction as the pregnancy advances. Providing greater availability of protein in the intestines contributed to an increase in placenta angiogenesis, and blood flow during gestation through nitric oxide [34,35]. Therefore, the enrichment of this pathway at late gestation may be related to a greater concentration of polyamines, and consequently greater placental development during gestation.

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Fig 1. Enriched energy protein pathways of the exclusive proteins from treatment PRU.

Summary of the protein metabolism pathways influenced by the experimental treatments. Proteins inside the orange square are positively regulated in treatment PRU (post-ruminal releasing of urea) compared to CON. ADI1: Acireductone dioxygenase 1; MTAP: Methylthioadenosine phosphorylase; GCLM: γ-glutamylcysteine synthase; BCKDHA: Branched chain keto acid dehydrogenase E1 subunit alpha; MMUT: Methylmalonyl- CoA isomerase; MAT1A: S-adenosylmethionine synthase isoform type-1.

https://doi.org/10.1371/journal.pone.0293216.g001

Evaluating the enriched pathways of the exclusively expressed proteins in PRU cows, we have identified pathways related to carbohydrate digestion, and absorption, glycolysis, pyruvate metabolism, oxidative phosphorylation, pentose phosphate pathway, and biosynthesis of amino acids (Figs 1 and 2). Therefore, our data indicate a change in the hepatic energy balance due to PRU supplementation. These findings can be explained by the improvement in ruminal metabolism by the post-ruminal nitrogen supply, as shown by Oliveira [10] which provided greater input of substrates to enter the metabolic pathways described above. Different isoforms of the protein Na+/K+ ATPase (ATP1A), responsible for the ATP hydrolysis coupled to the active transport of Na+ and K+ across the plasma membrane [36] were identified exclusively in PRU cows. Wood [37] observed an increase in the abundance of ATP1A protein in the liver of pregnant cows, suggesting an increase in the metabolic rate during gestation. The action of ATP1A in the liver is related to the active transport of substrates, and the maintenance of ionic homeostasis [38]. Investigating the effects of increasing levels of forages in the diet of growing calves, Wang [39] detected a linear relationship between the abundance of liver ATP1A, and forage inclusion levels, suggesting that the production of short-chain fatty acids in rumen may influence liver ATP1A abundance. Souza [13] observed an increase in volatile fatty acids concentration, and lower pH in rumen when shifting urea release from rumen to the abomasum. This report supports our findings, in which an increase in the abundance of ATP1A in the liver of pregnant cows may be associated with the improvement in ruminal metabolism when supplemented with PRU.

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Fig 2. Enriched energy metabolism pathways of the exclusive proteins from treatment PRU.

Summary of the energy metabolism pathways influenced by the experimental treatments. Proteins inside the orange square are positively regulated in treatment PRU (post-ruminal releasing of urea) compared to CON. ALDOA: Aldolase; PGAM1: Phosphoglycerate mutase; PKRL: Pyruvate kinase; LDHA: Lactate dehydrogenase; PGD: 6-phosphogluconate dehydrogenase; DLAT: Dihydrolipoamide acetyltransferase; DECR1: 2,4-dienoyl-CoA reductase; NDUFA8, NDUFAB1, NDUFS1 e NDUFV2: Subunits of the complex I of the electron transport chain; UQCRB, UQCRH e UQCRC1: Subunits of the complex III of the electron transport chain; COX72A, COX6B1, COX5B e MGC148714: Subunits of the complex IV of the electron transport chain; ATP5D, ATP5F1, ATP5J, ATP5J2: Subunits of the ATP synthase complex of the electron transport chain.

https://doi.org/10.1371/journal.pone.0293216.g002

Mitochondria act as a power supplier to the cells through the production of adenosine triphosphate (ATP) coupled to the electron transport via the respiratory chain complexes [40]. Electron transport mechanisms between the mitochondrial complexes may lead to the generation of reactive oxygen species (ROS), since the mitochondria electron transfer in the respiratory chain is not entirely efficient [41]. We observed an exclusive presence of proteins complexes of the electron transport chain; complex I (NDUFA8, NDUFAB1, NDUFS1, and NDUFV2), complex III (UQCRB, UQCRH, and UQCRC1), complex IV (COX72A, COX6B1, COX5B e MGC148714), and ATP synthase (ATP5D, ATP5F1, ATP5J, ATP5J2) in liver of PRU cows (Fig 2), indicating an increase in the oxidative phosphorylation pathway and greater production of ATP in PRU animals. Concomitantly, we found the γ-glutamylcysteine synthase (GCLM) protein exclusively expressed in treatment PRU cows. GCLM is involved in glutathione (GSH) synthesis [42] (Fig 1). The GSH plays an antioxidant role in acting against the reactive oxygen species (ROS) that causes protein degradation [43]. The balance of GSH is closely connected to glucose metabolism through the pentose phosphate pathway, as this pathway generates NADPH used to maintain the reduced levels of GSH [43]. Moreover, the oxidative phosphorylation pathway, which was enriched in PRU treatment, is a potent source of ROS [43]. An imbalance between the increased production of ROS, and the availability of antioxidant defenses needed to reduce ROS accumulation during late gestation may expose cows to increased oxidative stress [44]. The oxidative stress is a significant underlying factor to dysfunctional host immune, and inflammatory responses that can increase the susceptibility of cows to a variety of health disorders, particularly during late gestation [45,46]. Therefore, our result indicates an increase in substrate availability in the liver, which contributed to greater metabolic efficiency in PRU cows. Furthermore, there was enhancement in GSH synthesis in PRU cows that may be reflect a responsive metabolic adaptation to support the increased ROS accumulation and decrease oxidative stress risk generated by increase in the synthesis of ATP in PRU cows.

We have also identified the protein aldolase (ALDOA), to be exclusively expressed in the liver of PRU cows. This protein participates in the last step of the energy-investment phase of glycolysis, catalyzing the conversion of fructose-1,6-bisphosphate into glyceraldehyde 3-phosphate, and dihydroxyacetone phosphate [47] (Fig 2). In the energy-generation phase of glycolysis the exclusively expressed proteins in PRU cows, phosphoglycerate mutase (PGAM1), and pyruvate kinase (PKLR) are involved in the conversion of 3-phosphoglycerate into 2-phosphoglycerate [48], and the conversion phosphoenolpyruvate into pyruvate [49], respectively (Fig 2). As such, our results suggest that the supplementation of PRU sources contribute for the formation of lactate, and acetyl-CoA from pyruvate. Moreover, lactate dehydrogenase (LDHA), also found to be exclusively expressed in PRU cows, catalyzes the conversion of lactate into pyruvate allowing the generation of reducing equivalents (NAD+) in anaerobic conditions (Fig 2). Whereas the subunit of the pyruvate dehydrogenase complex, the dihydrolipoamide acetyltransferase (DLAT), exclusively expressed in PRU cows, contribute for the synthesis of acetyl-CoA (Fig 2). In summary, our results indicate that supplementing cows during late gestation with PRU may cause an enhancement in glycolysis pathways, and contribute for the synthesis of acetyl-CoA, leading to the improvement in the liver energy balance.

The 6-phosphogluconate dehydrogenase (PGD) protein, exclusively expressed in PRU cows, play role in the decarboxylation of 6-phosphogluconate to ribulose 5-phosphate, reducing NADP into NADPH, and afterward the ribose-5-phosphate is synthesized (Fig 2). The NADPH is demanded to supply the reduction equivalents of most biosynthetic reactions, such as the fatty acid biosynthesis. Interestingly, the more abundant or exclusively expressed proteins in PRU compared to CON cows, such as methylmalonyl- CoA isomerase (MMUT), 2,4-dienoyl-CoA reductase 1 (DECR1), and branched chain keto acid dehydrogenase E1 subunit alpha (BCKDHA) are involved in energy metabolism, and lipid biosynthesis. The BCKDHA catalyzes the decarboxylation of the α-ketoacids from valine, leucine, and isoleucine, promoting the synthesis propionyl- CoA, whereas the enzyme MMUT regulate the conversion of methylmalonyl-CoA into succinyl- CoA entering the krebs cycle. The DECR1 is involved in the β-oxidation of the unsaturated fatty acids [50]. Taken together, our results suggest that the reduction equivalents synthesized in the pentose phosphate pathways may have been used in β-oxidation, promoting the formation of acetyl-CoA. While the production of ribose-5-phosphate from this pathway contributes to the synthesis of nucleotides, and nucleic acids. Thus, the current study provided evidence that the supplementation of PRU sources is beneficial in liver ATP synthesis, through the enriched pathways of glycolysis, and oxidative phosphorylation.

Protein supplementation has been the focus of the research on pregnant beef cows’ nutrition [51]. When evaluating the partition of crude protein among maternal, and conceptus tissues in ewes during late pregnancy, a moderate net loss of carcass protein was observed over this period [4]. It is important mentioning that amino acid requirements increase in late gestation [1]. Under a scarcity of feedstuffs, maternal skeletal muscle mobilization occurs as an attempt to improve fetal access to amino acids [1]. In addition, part of the amino acids provided by maternal muscle breakdown may be used for the synthesis of milk protein or provide glucose through gluconeogenesis during the first weeks of lactation [52]. However, nutritional strategy that decreases the muscle breakdown in late gestation are recommended to optimize maternal metabolism and to meet fetal requirements. Our results revealed greater urinary level of 3-methyl histidine in CON compared to PRU cows. The 3-methyl histidine is an amino acid derived from the methylation of histidine resulting from the degradation of muscle proteins, and it cannot be reused for protein synthesis, and, consequently, it is excreted in urine [53]. Therefore, the greater urinary 3-methyl histidine in CON cows is an indicative of greater muscle catabolism compared to PRU cows. Therefore, our results suggest that supplementation with PRU reduced muscle catabolism in pregnant cows at late gestation, indicating greater amino acid uptake PRU cows, thus reducing mobilization of maternal skeletal muscle. These findings can be explained by the increase in the ammonia pool for the synthesis of urea in the liver, which in turn generates greater uptake of recycled N by rumen microorganisms [9,10], contributing to the increase in microbial protein, and consequently reducing the demands for muscle protein mobilization. Although phenotypic differences were not observed between the experimental groups, it may cause a long term-effect in cows during the lactating period, and in their progeny performance, as previously described [54], where in the increase in the levels of abomasum infusion of urea contributed to a linear increase in milk protein and urea content that may be benefit calves’ development through a better-quality milk intake. Therefore, supplementation with post-ruminal urea through the diet is an effective way to reduce the amplitude of maternal tissue mobilization during pregnancy and may lead to long-term benefits.

Conclusion

Shifting urea supply from the rumen to post-ruminal compartments decreases muscle catabolism in cows during late gestation. Our findings indicate that post-ruminal urea supplementation for beef cows at late gestation may improve the energy metabolism to support maternal demands. In addition, the post-ruminal urea release seems to be able to trigger pathways to counterbalance the oxidative stress associated to the increase liver metabolic rate.

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