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The heterologous expression of a soybean (Glycine max) xyloglucan endotransglycosylase/hydrolase (XTH) in cotton (Gossypium hirsutum) suppresses parasitism by the root knot nematode Meloidogyne incognita

  • Prakash M. Niraula,

    Roles Conceptualization, Formal analysis, Investigation, Methodology, Validation, Writing – original draft

    Current address: Department of Plant Pathology & Microbiology, Texas A&M AgriLife Research & Extension Center, Texas A&M University, Weslaco, Texas, United States of America

    Affiliation Department of Biological Sciences, Mississippi State University, Mississippi State, Mississippi, United States of America

  • Katherine S. Lawrence,

    Roles Formal analysis, Investigation, Methodology, Resources, Supervision

    Affiliation Department of Entomology and Plant Pathology, Auburn University, Auburn, Alabama, United States of America

  • Vincent P. Klink

    Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – original draft

    heartwood27@hotmail.com

    Affiliations Department of Biological Sciences, Mississippi State University, Mississippi State, Mississippi, United States of America, Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, Mississippi, United States of America, Center for Computational Sciences High Performance Computing Collaboratory, Mississippi State University, Mississippi State, Mississippi, United States of America

Abstract

A Glycine max (soybean) hemicellulose modifying gene, xyloglucan endotransglycoslase/hydrolase (XTH43), has been identified as being expressed within a nurse cell known as a syncytium developing within the soybean root undergoing the process of defense to infection by the parasitic nematode, Heterodera glycines. The highly effective nature of XTH43 overexpression in suppressing H. glycines parasitism in soybean has led to experiments examining whether the heterologous expression of XTH43 in Gossypium hirsutum (upland cotton) could impair the parasitism of Meloidogyne incognita, that form a different type of nurse cell called a giant cell that is enclosed within a swollen root structure called a gall. The heterologous transgenic expression of XTH43 in cotton resulted in an 18% decrease in the number of galls, 70% decrease in egg masses, 64% decrease in egg production and a 97% decrease in second stage juvenile (J2) production as compared to transgenic controls. The heterologous XTH43 expression does not significantly affect root mass. The results demonstrate XTH43 expression functions effectively in impairing the development of M. incognita at numerous life cycle stages occurring within the cotton root. The experiments reveal that there are highly conserved aspects of the defense response of G. max that can function effectively in G. hirsutum to impair M. incognita having a different method of parasitism.

Introduction

The most abundant animals on earth are nematodes and among them are those that are parasitic to plants [1]. Plant parasitic nematodes present a significant problem for world agriculture, having been estimated to decrease world crop production by 7–10% or 0.1–0.2 trillion dollars, annually [24]. Therefore, identifying and developing strategies that would aid plants in defending themselves from parasitic nematodes through genetic resistance or other strategies are important.

The development of genetic resistance in plants to parasitic nematodes has been aided by a greater understanding of localized responses occurring at the site of nematode infection within the plant root. For example, RNA seq and microarray analyses of the infection site known as the syncytium, created through the parasitic activities of the soybean cyst nematode (SCN) (Heterodera glycines) in soybean (Glycine max), have led to the identification of many genes expressed specifically within those parasitized cells [5,6]. Among the genes whose expression was highly induced were homologs of the Arabidopsis thaliana BOTRYTIS INDUCED KINASE1 (BIK1) and xyloglucan endotransglycosylase/hydrolase (XTH) [6]. In A. thaliana, cytoplasmic BIK1 becomes phosphorylated through the activities of different microbe associated molecular patterns (MAMPs) on various membrane receptors. These receptors included FLAGELLIN SENSING2 (FLS2) and EF-Tu RECEPTOR (EFR) as well as DAMP PEPTIDE 1 RECEPTOR (AtPEPR1), each shared between BIK1 and BRI1-associated kinase 1 (BAK1) [710]. Furthermore, BIK1 can become autophosphorylated, leading to the activation of defense signaling processes [8,11,12]. Overexpression of G. max BIK1 was shown to suppress H. glycines parasitism in the susceptible genotype G. max[Williams 82/PI 518671] [13]. In contrast, RNAi of BIK1 in the H. glycines-resistant genotype G. max[Peking/PI 548402] impaired the defense response [13]. Overexpression of G. max BIK1 led to an increase in the expression of mitogen activated protein kinase 3 (MAPK3), which was shown to function in G. max resistance to H. glycines [14]. Furthermore, expression of MAPK3 in G. max led to the induction of XTH43 transcription [14]. These results provided a way to explain how the induction of XTH43 expression occurs. Unfortunately, it is unclear what role XTHs may have in defense responses for other plant species parasitized by different nematode species, such as the gall producing nematode M. incognita infecting Gossypium hirsutum (upland cotton).

XTH (EC 2.4.1.207) was found in all land plants and metabolizes the cell wall hemicellulose component xyloglucan [1526]. Xyloglucan is a complex, branched polysaccharide with a (β1–4)-linked D-glucan backbone, tethering adjacent cellulose microfibrils through hydrogen bonding [27,28]. XTH functions in processes leading to cell enlargement during growth and also xyloglucan metabolism, including its biosynthesis, remodeling and organization [29,30]. XTH has been demonstrated to shorten xyloglucan chain length under certain conditions [31]. XTH exhibits the hallmarks of a secreted protein, having a signal peptide and traveling through the vesicle transport system to its targeted site of action [32]. This characteristic implies a functional vesicle transport system, including proteins functioning in vesicle and target membrane fusion, which is important to the delivery of XTH to its site of activity. This property of XTH likely explains why the major H. glycines resistance gene in G. max includes alpha soluble N-ethymaleimide-sensitive factor attachment protein (α-SNAP) which functions along with the soluble N-ethymaleimide-sensitive factor attachment protein receptor (SNARE) and N-ethylmaleimide-sensitive factor (NSF) in the fusion and recycling of SNARE proteins [3335]. It also explains the observations of Bekal et al. (2015) who identified a secreted H. glycines protein that binds G. max α-SNAP [36], which would presumably impair the activities of SNARE by inhibiting the fusion of vesicle and target (cell) membranes. The ability of XTH to shorten xyloglucan chains may limit the expansion of cells that become incorporated into the syncytium, leading to an effective defense response [13]. Therefore, XTH may also function in impairing the parasitism of gall-producing nematode M. incognita.

The heterologous expression of genes identified in one plant (G. max) in another recipient plant (G. hirsutum) has been demonstrated to be an effective way to understand the genetics of defense in various plant-parasitic nematode pathosystems by generating resistance outcomes under conditions where they may not normally exist. For example, a number of G. max genes and various bacterial effectors have been tested in the G. hirsutum-M. incognita pathosystem showing that they function to impair parasitism [3740]. Pant et al. (2016) showed that the G. max homolog of the A. thaliana transcription factor NONEXPRESSOR OF PR1 (NPR1) functions effectively to suppress M. incognita parasitism in G. hirsutum [37,41]. Furthermore, the bacterial effector harpin, first identified from the fire blight pathogen Erwinia amylovora, was capable of activating the expression of the coiled-coil nucleotide binding leucine rich repeat (CC-NB-LRR) NON-RACE SPECIFIC DISEASE RESISTANCE 1 (NDR1) in G. max [39,4244]. The A. thaliana NDR1 functions through the MAPK signaling cascade to activate defense processes [4249]. Harpin was shown to induce the expression of homologs of NDR1, specific MAPKs, NPR1 and XTH43, among other genes in the G. max-H. glycines pathosystem [14,39,40]. The induction of NDR1 can function in G. max on different pathogens, including the charcoal rot ascomycete (Macrophomina phaseolina), indicating a broad effectiveness for different types of pathogens [50]. Heterologous expression approaches were also used to examine these G. max genes in G. hirsutum to determine early signaling events that are transduced either through pathogen effectors (harpin), membrane receptors (NDR1), or transcription factors (NPR1) [14,3840]. However, these experiments have not taken into consideration the subsequent products of these signaling events including genes like XTH that were induced by harpin, NDR1, BIK1, NPR1 and MAPKs [13,14,39,40].

Therefore, the objective of the present study was to examine the downstream component of the XTH defense process because the defense gene XTH43 performs a very specific role in cell wall metabolism [20,31]. The heterologous expression of the G. max XTH43 in G. hirsutum was evaluated to determine whether it can interfere with the life cycle of M. incognita. XTH43-expressing G. hirsutum roots infected with M. incognita were evaluated for their effect on galls, egg masses, eggs and second stage juveniles (J2s). The results showed a negative impact on M. incognita parasitism, but that effect was more apparent during the life cycle when egg masses, eggs and J2s are produced.

Materials

Gene selection and production of genetically mosaic transgenic G. hirsutum plants

The 864 bp G. max xyloglucan endotransglycosylase/hydrolase 43 (XTH43) (Glyma.17G065100) sequence has been expressed in G. hirsutum to evaluate its effect on M. incognita parasitism using published methods [37]. The Gateway®-compatible pRAP15 overexpression vector has the ccdB gene that is lethal to E. coli, functioning as an effective chemical selectable marker during vector engineering (Invitrogen) [51,52]. The XTH43 gene has been directionally engineered into the pRAP15 vector [13]. The pRAP15-XTH43 plasmids have been genetically transformed into Agrobacterium rhizogenes strain 15834 (15834) and selected on LB-agar supplemented with 5 μg/ml tetracycline [37]. Seeds of M. incognita-susceptible G. hirsutum (Phytogen 565 WRF) were planted in pre-wetted sterilized sand for germination. The seedlings were grown for 14 days at ambient greenhouse temperatures (~26-29°C). The seedlings were then removed from the sand and washed in sterile, deionized water. The root was excised with a sterile razor blade. G. hirsutum have been genetically transformed as described by McNeece et al. (2017) [40]. Briefly, an overnight culture of 15834 was grown in YEB Agrobacterium Growth Medium (Bioworld) according to the manufacturer’s instructions and supplemented with 5 μg/ml tetracycline. The 15834 culture was then pelleted during a 20 min spin at 4,000 RPM in a Sorvall RC6+ centrifuge and the pellet was re-suspended in 25 mL of Murashige and Skoog (MS) media including vitamins (Duchefa), pH 5.7 [40]. Subsequently, 25 root-less G. hirsutum plants per group were placed in a 140 ml beaker containing 25 ml of 15834 harboring the pRAP15-XTH expression plasmid or pRAP15-ccdB control. The plants were placed under a vacuum for 20 minutes. After 20 minutes, the vacuum was slowly released over a period of 5 minutes. The root-less G. hirsutum plants were then placed in 50 cell flats (T.O Plastics) with one plant per cell in coarse A-3 vermiculite (Palmetto Vermiculite). The 50-cell flats were placed in 24 L, 61.9 X 34.8 X 15.6 cm plastic containers (Sterlite) with the lid secured for 2 weeks while the plants recover under fluorescent lights. The recovered plants are subsequently placed in a greenhouse under ambient temperatures for two weeks prior to selection of transgenic plants.

The visual selection of transgenic roots has been accomplished with the enhanced green fluorescent protein (eGFP) reporter system [53]. The pRAP15 vector, containing the eGFP reporter is used to generate expression of a targeted gene [40,52,54,55]. In control and experimental plants, the eGFP and control or XTH43 genes will each have their own promoter and terminator sequences [13,37,40,52,55]. Due to the manner that 15834 transfers the DNA cassettes located between the left and right borders of the destination vector into the root cell chromosomal DNA, the subsequent growth and development of the stably transformed genetically engineered cell into a transgenic root results in the production of a plant that is a genetic mosaic called a composite plant [55,56]. These genetically mosaic plants have the entire shoot being non-transgenic while the entire root system is transgenic [5557]. Consequently, each individual transgenic root system functions as an independent transformant line [13,40,52,56,58].

cDNA synthesis

G. hirsutum root mRNA has been isolated using the UltraClean® Plant RNA Isolation Kit (Mo Bio Laboratories®, Inc.) according to the manufacturer’s instructions. Genomic DNA has been removed from the mRNA with DNase I (Invitrogen®) according to the manufacturer’s instructions. The cDNA has been synthesized from mRNA using the SuperScript® First Strand Synthesis System for RT-PCR (Invitrogen®) according to the manufacturer’s instructions. Oligo d(T) has been selected as the primer (Invitrogen®) for cDNA production with the experimental procedure performed according to the manufacturer’s instructions.

PCR

The presence of the XTH43 RNA has been demonstrated in PCR experiments that used cDNA produced from transgenic G. hirsutum root RNA. The quantitative real time PCR (qRT-PCR) control used in the G. hirsutum experiments has been designed from Gossypium raimondii S21 (Gorai.009G233700.1) (S1 Table) (Pant et al. 2015). Confirmation of eGFP expression has been performed by qRT-PCR according to McNeece et al. (2017) using Taqman® 6-carboxyfluorescein (6-FAM) probes and Black Hole Quencher (BHQ1) (MWG Operon; Birmingham, AL). Fold change has been calculated using 2-ΔΔCT [59] according to published methods [40]. PCR using cDNA produced from mRNA isolated from the pRAP15 control and the XTH43-expressing roots has been used to demonstrate that XTH43 has been expressed in the transgenic roots. The qRT-PCR data has been analyzed statistically using the Student’s t-test.

Infection by M. incognita and analysis of results

The M. incognita (race 3) have been confirmed by the North Carolina differential host test and increased on Lycopersicum esculentum (tomato) under ambient greenhouse conditions [6064]. [Eggs were extracted from roots by placing the root system in a 0.625% NaOCl solution and agitating the roots for 4 min using a rotary shaker at 120 rpm Eggs were rinsed with tap water, collected on a 25-μm-pore sieve, then processed by sucrose centrifugation-flotation at 240 g for 1 minute [60]. M. incognita eggs were placed in a modified Baermann funnel [65] on a slide warmer (Model 77) (Marshall Scientific, Brentwood, NH) and incubated at 31°C for 5 to 7 days to obtain second stage juveniles (J2) [66]. The J2 were collected on a 25-μm-pore sieve, transferred to 1.5 ml microcentrifuge tubes, centrifuged at 5,000 g for 1 minute, rinsed with sterile distilled water, and centrifuged at 5,000 g for 1 minute. The J2 suspension was adjusted to 30 to 40 J2 per 10 μl of water [66]. M. incognita extraction has been performed by gravity screening and centrifugal flotation (sucrose specific gravity = 1.13) [60]. M. incognita eggs and second stage juveniles (J2s) were extracted from L. esculentum roots by a 4 minute root immersion in 0.525% NaOCl [61]. The hatched M. incognita J2s have been maintained at 4 ± 1 °C in water at until inoculation [63].

Transgenic G. hirsutum plants have been grown in 15 cm diameter clay pots. The pots were filled with 500 cm3 of the sterilized soil-sand mixture. In these pots, a suspension of 2,500 M. incognita in 3 ml suspension were pipetted into each of two holes (2.5 cm diameter x 2.5 cm deep). The plants grew in the greenhouse maintained at a temperature range of 25° to 35°C given at least 12 hours/day of ambient light. The M. incognita life-stage development has been described using a modified Christie’s method [63,67,68]. The nematodes were extracted by combined gravity screening and sucrose centrifugation at 50 days post infection (dpi). The nematodes were then enumerated on grated Petri dishes with an Olympus BH2 B071 microscope (Japan Model C35AD-4) at 40 X magnification [39]. Root fresh weights have also been determined to allow the calculation of galls, egg masses, eggs and J2s per gram of root tissue [38]. The enumeration and statistical analyses of galls, egg masses, eggs and J2s have been done, standardizing them in two different ways in order to differentiate between the effects that XTH43 expression has on M. incognita development in relation to the root. These two different analyses include enumerating the number of galls, egg masses, eggs and J2s in the whole root (wr) and per gram (pg) of root tissue. In each analysis the results are considered statistically significant if p < 0.05, determined using Mann-Whitney-Wilcoxon Rank Sum Test.

Results

Generation of transgenic plants heterologously expressing XTH43

Transgenic approaches in G. hirsutum allow for an analysis of the effect that the expression of the XTH43 transgene has on different aspects of M. incognita life cycle. Among these features are the development of galls, production of egg masses, eggs and J2s (Fig 1). G. hirsutum plants have had their roots excised with transgenic roots subsequently regrown for the purposes of the experimental approach and goals (Fig 2). Genetically mosaic G. hirsutum plants having transgenic roots and a non-transgenic shoots showed eGFP fluorescence in the roots for pRAP15-ccdB (control) and XTH43 (experimental) lines, demonstrating a functional reporter while PCR confirmed XTH43 expression (Fig 3). The number of control plants and XTH43-expressing transgenic plants spanning three biological replicates were examined for the M. incognita infection response presented in the subsequent studies (Table 1).

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Fig 1. M. incognita life cycle showing egg, J2, J3, J4, females with egg masses, giant cell and swollen root (gall).

https://doi.org/10.1371/journal.pone.0235344.g001

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Fig 2. Transgenic strategy.

A. G. hirsutum will have its root removed (dashed line). B. G. hirsutum with its root removed. C. A new transgenic root grows. D. One cache of roots is engineered to express the G. max XTH43. Another cache of roots is genetically engineered with pRAP15-ccdB, lacking XTH43. The roots, after infection for 50 days are analyzed for galls, egg masses, eggs and J2s. (R), engineered resistant reaction (XTH43-expressing); (S) susceptible reaction (control).

https://doi.org/10.1371/journal.pone.0235344.g002

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Fig 3. Generation of transgenic roots.

A. pRAP15 control root revealed by the eGFP reporter. Bar = 1 cm. B. XTH43-expressing engineered root revealed by the eGFP reporter. Bar = 1 cm. C. qRT-PCR demonstrates similar expression of the eGFP reporter construct as compared to the S21 control is occurring at a similar level between the pRAP15 control and XTH43-expressing transgenic lines. D. PCR has been used to demonstrate the presence of the XTH43 transcript only in the transgenic XTH43 expressing line in comparison to the control; lane 1, DNA ladder with base pairs indicated with black arrowheads; lane 2, control; lane 3, XTH43-expressing line.

https://doi.org/10.1371/journal.pone.0235344.g003

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Table 1. The number of transgenic plants analyzed in the study.

https://doi.org/10.1371/journal.pone.0235344.t001

Effect of XTH43 expression on M. incognita development

The analysis of the effect of XTH43 expression in G. hirsutum began by examining the number of galls produced by M. incognita, followed by analyses of the numbers of egg masses (Fig 4). The total number of galls for the whole root evaluation showed a mean of 28.6 galls for the XTH43-expressing plants, which was a significant decrease (p = 0.046) of 20.4% compared to a mean of 35.9 galls for the control plants (Fig 5). However, the mean number of galls per gram of root tissue for the treatments were not significant (p = 0.234). XTH43-expressing roots showed a mean of 3.7 galls per gram of root compared to a mean of 4.5 galls per gram of root for the control, which was a 17.7% reduction (Fig 5).

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Fig 4. Morphological features of M. incognita infection of G. hirsutum.

A. Root galls in pRAP15-control. B. root galls in XTH43-expressing G. hirsutum. C. Egg masses in pRAP15-control. D. Egg masses in XTH43-expressing G. hirsutum. White arrowheads point to galls (A, B) or egg masses (C, D). Bars = 1 cm.

https://doi.org/10.1371/journal.pone.0235344.g004

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Fig 5. M. incognita-induced root gall analyses in whole roots (wr) and per gram (pg) of root tissue show G. hirsutum roots genetically engineered to express XTH43 affects their parasitism.

A. Total change in root galls as compared to the control (wr, p = 0.046*; pg, p = 0.234). B. Transformed data from A showing percent change in root galls as compared to the control (wr, p = 0.046*; pg, p = 0.234). (*) denotes statistically significant p < 0.05, determined using Mann-Whitney-Wilcoxon Rank Sum Test.

https://doi.org/10.1371/journal.pone.0235344.g005

Effect of XTH43 expression on egg mass development

The total number of egg masses in XTH43-expressing roots was significantly decreased (p = 0.002). Roots of XTH43-expressing plants show a 49.6% reduction egg masses with a mean of 11.6 egg masses compare to a mean of 22.9 egg masses for the control plants (Fig 6). The number of egg masses per gram of root also showed a significant reduction (p = 0.012) with a mean of 0.09 for XTH43-expressing plants and a mean of 3.0 for control plants, which represents a 70% reduction in nematode reproduction (Fig 6).

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Fig 6. M. incognita egg mass analyses in whole roots (wr) and per gram (pg) of root tissue show G. hirsutum roots genetically engineered to express XTH43 affects their parasitism.

A. Total change in egg masses as compared to the control (wr, p = 0.002*; pg, p = 0.012*). B. Transformed data from A showing percent change in egg masses as compared to the control (wr, p = 0.002*; pg, p = 0.012*). (*) denotes statistically significant p < 0.05, determined using Mann-Whitney-Wilcoxon Rank Sum Test.

https://doi.org/10.1371/journal.pone.0235344.g006

Effect of XTH43 expression on egg development

A mean of 11,748.4 eggs were produced on roots of XTH43-expressing plants and 31,382.8 eggs for control plants with a mean of 1,414.9 eggs per gram of root for XTH43-expressing plants and a mean of 3,892.1 eggs per gram of root for the control plants (Fig 7). These data represent a significant decrease in the total number of eggs (p < 0.001) and number of eggs per gram of root (p < 0.001) with an overall decrease of approximately 62.6% and 63.6% for the two analyses, respectively.

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Fig 7. M. incognita egg analyses of in whole roots (wr) and per gram (pg) of root tissue show G. hirsutum roots genetically engineered to express XTH43 affects their parasitism.

A. Total change in eggs as compared to the control (wr, p < 0.001*; pg, p < 0.001*). B. Transformed data from A showing percent change in eggs as compared to the control (wr, p < 0.001*; pg, p < 0.001*). (*) denotes statistically significant p < 0.05, determined using Mann-Whitney-Wilcoxon Rank Sum Test.

https://doi.org/10.1371/journal.pone.0235344.g007

Effect of XTH43 expression in G. hirsutum on J2 development

XTH43-expressing plants showed a significant reduction in J2s for the whole root evaluation and for the evaluation based on root weight. For the whole root evaluation, a mean of 7,049.1 J2s were recorded for XTH43-expressing plants and a mean of 14,572.9 J2s for the control plants representing a statistically significant reduction of 62.6% (p < 0.001) (Fig 8). A mean of 55.9 J2s per gram of root was observed for the XTH43-expressing plants compared to a mean 1,758.6 for the control plants resulting in a statistically significant reduction of 96.8% (p = 0.007) (Fig 8).

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Fig 8. M. incognita J2 analyses in whole roots (wr) and per gram (pg) of root tissue show G. hirsutum roots genetically engineered to express XTH43 affects their parasitism.

A. Total change in J2s as compared to the control (wr, p < 0.001*; pg, p = 0.007*). B. Transformed data from A showing percent change in juveniles as compared to the control (wr, p < 0.001*; pg, p = 0.007*). (*) denotes statistically significant p < 0.05, determined using Mann-Whitney-Wilcoxon Rank Sum Test.

https://doi.org/10.1371/journal.pone.0235344.g008

Effect of XTH43 expression in G. hirsutum has on root mass

An analysis was done to determine if XTH43 expression in G. hirsutum had any impact on root mass. The XTH43 expressing plants showed a 20.1% decrease in root mass compared to the control (Fig 9). However, this decrease was not significant (p = 0.897).

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Fig 9. Root masses of transgenic plants used in the analysis.

The control root mass has been determined to be 10.631 g as compared to 8.494 g in the XTH43 expressing roots, p = 0.897 determined using Mann-Whitney-Wilcoxon Rank Sum Test.

https://doi.org/10.1371/journal.pone.0235344.g009

Discussion

The heterologous expression of the G. max XTH43 in G. hirsutum has been examined here to determine if it would suppress M. incognita development because it functions effectively in soybean to suppress H. glycines parasitism [13]. The heterologous expression of XTH43 in G. hirsutum does not appear to lead to any statistically significant adverse effect on root mass. There is approximately an 18–20% decrease in the number of galls as a consequence of XTH43 expression in G. hirsutum indicating XTH43 has a slight effect on earlier stages of parasitism. However, other aspects of the M. incognita life cycle have been shown here to be more sensitive to XTH43 expression in G. hirsutum with almost a 97% reduction in J2s, ranking it among the most effective heterologously expressed G. max genes on M. incognita parasitism.

A relationship between the G. max XTH43 and the G. hirsutum genome

Blast searches of the G. hirsutum cultivar TM-1 using the G. max XTH43 protein sequence were performed after obtaining the results that show that the G. max XTH43 expression negatively effects M. incognita development. Those unpublished results that are not a part of these experiments, revealed XTH43 was 82% identical to LOC107907479 (NCBI identifier XP_016690364). There were 14 other G. hirsutum protein sequences having between 69–81% identity to XTH43 and even more having identities that were much lower. Our prior experiments have revealed that the G. max XTH43 occurs among a gene family having 53 total homologs [13]. XTH43 exists on chromosome 17 in a region of DNA having a localized amplification in gene copy number [13]. This region of DNA has 6 copies of XTH (XTH41, XTH42, XTH43, XTH44, XTH45, XTH46) [13]. In G. max, copy number variation appears to play a role in defense to H. glycines under certain circumstances. However, what is more clear is the importance of the level of expression of those genes to the defense process [13,52]. An examination of the G. hirsutum XTH gene family was beyond the scope of the analysis here. However, the findings provide important insight into the design of experiments that could lead to the demonstration of specialized functions for specific XTH genes that function in defense. These would be important experiments, moving forward.

Model

Over the past few years, a series of genes that function in G. max in its defense to H. glycines have been shown through their heterologous expression to impair M. incognita parasitism in G. hirsutum [13,14,35,37,38,40]. Importantly, the analyses have included an examination of G. max homologs of NDR1, as well as the harpin effector that induces NDR1 expression (Fig 10) [39]. Prior studies have shown that expression of the G. max NDR1 in G. hirsutum reduces M. incognita gall production by 65.2% [40] as compared to the 17.7% reduction found here by XTH43 expression. These results are consistent with the observation that the induction of G. max NDR1 expression affects other cellular processes [40]. For example, the overexpression of the G. max NDR1 leads to an increase in expression of a number of defense genes other than those already described (NPR1, BIK1, XTH43). Among those genes are components of the 20S particle, including the rhg1 gene α-SNAP, NSF, syntaxin31, syntaxin121, synaptobrevin, synaptotagmin, mammalian uncoordinated 18 (Munc18), SNAP25 and NSF [40]. Among NDR1-induced genes associating with SA signaling include NPR1, ENHANCED DISEASE SUSCEPTIBILITY1 (EDS1), TGA2 and LESION SIMULATING DISEASE 1 (LSD1) [40]. Among the NDR1-induced genes are also those associating with glucoside production, including α-hydroxynitrile glucosidase and cytochrome P450 (CYP) 79D4 (CYP79D4) [40]. Furthermore, an ATP binding cassette (ABC) transporter has been identified as being induced by NDR1 [40]. Lastly, NDR1 induces the expression of a gene shown to function additively with rhg1 (α-SNAP), the serine hydroxymethyltransferase (Rhg4) [40].

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Fig 10. Model.

The bacterial effector harpin has been shown to suppress M. incognita parasitism in G. hirsutum and function to induce the expression of NDR1 (Aljaafri et al. 2017). NDR1 expression leads to induced MAPK and NPR1 expression (McNeece et al. 2017). NDR1, MAPK and NPR1 expression all induce XTH43 expression (McNeece et al. 2019). The heterologous expression of NDR1 and NPR1 in G. hirsutum functions to decrease M. incognita parasitism (Pant et al. 2016; McNeece et al. 2017). Genes in red, and harpin, have been demonstrated, when expressed heterologously in G. hirsutum or topically applied, to impair M. incognita parasitism (Matsye et al. 2012; Pant et al. 2015; Aljaafri et al. 2017; Sharma et al. 2016; McNeece et al. 2017; Lawaju et al. 2018).

https://doi.org/10.1371/journal.pone.0235344.g010

In contrast to these observations, it is possible the events that are important for defense and require XTH43 are impaired by the parasitic activities of M. incognita. For example, Yokoyama et al. (2001) have shown that XTH travels through the vesicle transport system to be delivered for its role in hemicellulose modification [32] and as stated, Bekal et al. (2015) have identified a secreted H. glycines protein that binds G. max α-SNAP, which could impair SNARE [36]. In comparisons of G. max NDR1, its expression leads to a 68.8% decrease in egg mass production [40] in comparison to a 97.1% decrease in G. hirsutum roots expressing XTH43. It appears that heterologous expression of XTH43 effectively impairs M. incognita parasitism in the later stages. In experiments examining egg production, the expression of G. max NDR1 leads to a 78.5% decrease in M. incognita egg production [40]; whereas, the decrease in M. incognita egg production was lower in roots expressing XTH43. Lastly, the expression of the G. max NDR1 leads to a 97.3% decrease in M. incognita J2 production [40]. This outcome is similar to a 96.8% decrease in M. incognita J2 production in roots expressing XTH43. A number of experiments have shown that it is possible to examine components of a defense response to parasitic nematodes that is induced by the bacterial effector harpin [39]. Harpin has been shown to induce the expression of genes that relate to important aspect of genetic resistance in G. max. Furthermore, the observation that harpin induces rhg1 is consistent with the role that the vesicle transport process has to transport cell wall modifying proteins like XTH43. Once at the apoplast, XTH43 would be in position to alter the hemicellulose by modifying xyloglucan chain length. Rhg4 functioning in 1-carbon metabolic processes could be employed to redirect carbon to the production of xyloglucan for cell wall building and modifying processes that impair the life cycle of parasitic nematodes [69]. However, regarding harpin, recent experiments have shown it is susceptible to deactivation by bacterial effectors so this issue must be taken into consideration in any work regarding harpin [70]. The results presented here demonstrate the function of XTH43 in impairing parasitic nematodes is likely to be conserved. Furthermore, its association with the vesicle transport machinery make it feasible to believe that a number of conserved cellular processes are employed to facilitate its transport and activity. The results also show that the genetic transfer of defense components from one plant to another can be activated and function to a very high level of fidelity, overcoming the influence of the pathogen. The results presented here are of significant interest to determine ways to develop resistance to pathogens where is normally does not exist.

Acknowledgments

The authors thank Dr. Robert L. Nichols and Dr. Kater D. Hake. The authors thank Drs. Brant McNeece, Prachi Matsye and Shankar Pant. The greenhouse space has been kindly provided by the Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University.

References

  1. 1. Van den Hoogen J, Geisen S, Routh D, Ferris H, Traunspurger W, Wardle DA, et al. Soil nematode abundance and functional group composition at a global scale. Nature. 2019; 572(7768): 194–198. pmid:31341281
  2. 2. Sasser J, Freckman D. A world perspective on nematology; the role of the society. In: Veech JA, Dickerson Dw (eds) Vistas on nematology. Soc Nematol Hyattsv. 1987; pp 7–14.
  3. 3. Chitwood DJ. Nematicides. In: Plimmer JR, editor. In: Encyclopedia of Agrochemicals. 2003; pp. 1104–1115.
  4. 4. Wrather JA, Koenning SR. Estimates of disease effects on soybean yields in the United States 2003 to 2005. J Nematol. 2006; 38(2): 173–180. pmid:19259444
  5. 5. Klink VP, Overall CC, Alkharouf NW, MacDonald MH, Matthews BF. Laser capture microdissection (LCM) and comparative microarray expression analysis of syncytial cells isolated from incompatible and compatible soybean (Glycine max) roots infected by the soybean cyst nematode (Heterodera glycines). Planta. 2007; 226(6): 1389–1409. pmid:17668236
  6. 6. Matsye PD, Kumar R, Hosseini P, Jones CM, Tremblay A, Alkharouf NW, et al. Mapping cell fate decisions that occur during soybean defense responses. Plant Mol Biol. 2011; 77(4–5): 513–528. pmid:21986905
  7. 7. Li J, Chory J. A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. Cell. 1997; 90(5): 929–938. pmid:9298904
  8. 8. Veronese P, Nakagami H, Bluhm B, AbuQamar S, Chen X, Salmeron J, et al. The membrane-anchored BOTRYTIS-INDUCED KINASE1 plays distinct roles in Arabidopsis resistance to necrotrophic and biotrophic pathogens. Plant Cell. 2006; 18(1): 257–273. pmid:16339855
  9. 9. Zipfel C, Kunze G, Chinchilla D, Caniard A, Jones JDG, Boller T, et al. Perception of the Bacterial PAMP EF-Tu by the Receptor EFR Restricts Agrobacterium-Mediated Transformation. Cell. 2006; 125(4): 749–760. pmid:16713565
  10. 10. Liu Z, Wu Y, Yang F, Zhang Y, Chen S, Xie Q, et al. BIK1 interacts with PEPRs to mediate ethylene-induced immunity. Proc Natl Acad Sci U S A. 2013; 110(15): 6205–6210. pmid:23431184
  11. 11. Chinchilla D, Zipfel C, Robatzek S, Kemmerling B, Nürnberger T, Jones JDG, et al. A flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence. Nature. 2007; 448(7152): 497–500. pmid:17625569
  12. 12. Lin W, Li B, Lu D, Chen S, Zhu N, He P, et al. Tyrosine phosphorylation of protein kinase complex BAK1/BIK1 mediates Arabidopsis innate immunity. Proc Natl Acad Sci U S A. 2014; 111(9): 3632–3637. pmid:24532660
  13. 13. Pant SR, Matsye PD, McNeece BT, Sharma K, Krishnavajhala A, Lawrence GW, et al. Syntaxin 31 functions in Glycine max resistance to the plant parasitic nematode Heterodera glycines. Plant Mol Biol. 2014; 85(1–2): 107–121. pmid:24452833
  14. 14. McNeece BT, Sharma K, Lawrence GW, Lawrence KS, Klink VP. The mitogen activated protein kinase (MAPK) gene family functions as a cohort during the Glycine max defense response to Heterodera glycines. Plant Physiol Biochem. 2019; 137: 25–41. pmid:30711881
  15. 15. Hayashi T, Maclachlan G. Pea xyloglucan and cellulose. III. Metabolism during lateral expansion of pea epicotyl cells. Plant Physiol. 1984; 76: 739–742. pmid:16663916
  16. 16. Hayashi T, Wong YS, Maclachlan G. Pea xyloglucan and cellulose: II. metabolism during lateral expansion of pea epicotyl cells. Plant Physiol. 1984; 75(3): 605–610. pmid:16663673
  17. 17. Van Sandt VST, Guisez Y, Verbelen JP, Vissenberg K. Xyloglucan endotransglycosylase/hydrolase (XTH) is encoded by a multi-gene family in the primitive vascular land plant Selaginella kraussiana. Plant Biol. 2007; 9(1): 142–146. pmid:17099842
  18. 18. Eklöf JM, Brumer H. The XTH gene family: An update on enzyme structure, function, and phylogeny in xyloglucan remodeling. Plant Physiol. 2010; 153(2): 456–466. pmid:20421457
  19. 19. Fry S. The structure and functions of xyloglucan. J Exp Bot. 1989; 40: 1–11.
  20. 20. Fry SC. Cellulases, hemicelluloses and auxin-stimulated growth: a possible relationship. Physiol Plant. 1989; 75(4): 532–536.
  21. 21. Hayashi T. Xyloglucans in the primary cell wall. Annu Rev Plant Physiol Plant Mol Bioi. 1989; 40: 139–147.
  22. 22. Fry SC, Smith RC, Renwick KF, Martin DJ, Hodge SK, Matthews KJ. Xyloglucan endotransglycosylase, a new wall-loosening enzyme activity from plants. Biochem J. 1992; 282(3): 821–828.
  23. 23. Fry SC, Mohler KE, Nesselrode BHWA, Frankov L. Mixed-linkage -glucan:xyloglucan endotransglucosylase, a novel wall-remodelling enzyme from Equisetum (horsetails) and charophytic algae. Plant J. 2008; 55(2): 240–252. pmid:18397375
  24. 24. Carpita NC, Gibeaut DM. Structural models of primary cell walls in flowering plants: Consistency of molecular structure with the physical properties of the walls during growth. Plant J. 1993; 3(1): 1–30. pmid:8401598
  25. 25. O’Neill MA, York WS. The Composition and Structure of Plant Primary Cell Walls. In: Annual Plant Reviews online. 2018. p. 1–54.
  26. 26. Van Sandt V, Guizez Y, Verbelen J, Vissenberg K. Analysis of a xyloglucan endotransglycosylase/hydrolase (XTH) from the lycopodiophyte Selaginella kraussiana suggests that XTH sequence characteristics and function are higly consered during the evolution of vascular plants. J Exp Bot. 2006; 57: 2909–2922. pmid:16873447
  27. 27. Hayashi T, Takeda T, Ogawa K, Mitsuishi Y. Effects of the Degree of Polymerization on the Binding of Xyloglucans to Cellulose. Plant Cell Physiol. 1994; 35(6): 893–899. pmid:7981962
  28. 28. Mellerowicz E, Immerzeel P, Hayashi T. Xyloglucan: The molecular muscle of trees. Ann Bot. 2008; 102: 659–665. pmid:18757879
  29. 29. Jia Z, Cash M, Darvill AG, York WS. NMR characterization of endogenously O-acetylated oligosaccharides isolated from tomato (Lycopersicon esculentum) xyloglucan. Carbohydr Res. 2005; 340(11): 1818–1825. pmid:15927168
  30. 30. Hayashi T, Kaida R. Functions of xyloglucan in plant cells. Mol Plant. 2011; 4(1): 17–24. pmid:20943810
  31. 31. Nishikubo N, Takahashi J, Roos AA, Derba-Maceluch M, Piens K, Brumer H, et al. Xyloglucan endo-transglycosylase-mediated xyloglucan rearrangements in developingwood of hybrid aspen. Plant Physiol. 2011; 155(1): 399–413. pmid:21057113
  32. 32. Yokoyama R, Nishitani K. Endoxyloglucan Transferase is Localized both in the Cell Plate and in the Secretory Pathway Destined for the Apoplast in Tobacco Cells. Plant Cell Physiol. 2001; 42(3): 292–300. pmid:11266580
  33. 33. Wilson DW, Whiteheart SW, Wiedmann M, Brunner M, Rothman JE. A multisubunit particle implicated in membrane fusion. J Cell Biol. 1992; 117(3): 531–538. pmid:1315316
  34. 34. Söllner T, Bennett MK, Whiteheart SW, Scheller RH, Rothman’ JE. A Protein Assembly-Disassembly Pathway In Vitro That May Correspond to Sequential Steps of Synaptic Vesicle Docking, Activation, and Fusion. Cell. 1993; 75: 409–418. pmid:8221884
  35. 35. Sharma K, Pant SR, McNeece BT, Lawrence GW, Klink VP. Co-regulation of the Glycine max soluble N-ethylmaleimide-sensitive fusion protein attachment protein receptor (SNARE)-containing regulon occurs during defense to a root pathogen. J Plant Interact. 2016; 11(1): 74–93.
  36. 36. Bekal S, Domier LL, Gonfa B, Lakhssassi N, Meksem K, Lambert KN. A SNARE-Like Protein and Biotin Are Implicated in Soybean Cyst Nematode Virulence. PLoS One. 2015; 10(12): e0145601. pmid:26714307
  37. 37. Pant SR, McNeece BT, Sharma K, Nirula PM, Jiang J, Harris JL, et al. A plant transformation system designed for high throughput genomics in Gossypium hirsutum to study root–organism interactions. J Plant Interact. 2015; 10(1): 11–20.
  38. 38. Pant SR, McNeece BT, Sharma K, Niruala P, Burson HE, Lawrence GW, et al. The heterologous expression of a Glycine max homolog of NONEXPRESSOR OF PR1 (NPR1) and α-hydroxynitrile glucosidase suppresses parasitism by the root pathogen Meloidogyne incognita in Gossypium hirsutum. J Plant Interact. 2016; 11(1): 41–52.
  39. 39. Aljaafri WAR, McNeece BT, Lawaju BR, Sharma K, Niruala PM, Pant SR, et al. A harpin elicitor induces the expression of a coiled-coil nucleotide binding leucine rich repeat (CC-NB-LRR) defense signaling gene and others functioning during defense to parasitic nematodes. Plant Physiol Biochem. 2017; 121: 161–175. pmid:29107936
  40. 40. McNeece BT, Pant SR, Sharma K, Niruala P, Lawrence GW, Klink VP. A Glycine max homolog of NON-RACE SPECIFIC DISEASE RESISTANCE 1 (NDR1) alters defense gene expression while functioning during a resistance response to different root pathogens in different genetic backgrounds. Plant Physiol Biochem. 2017; 114: 60–71. pmid:28273511
  41. 41. Hui Cao, Bowling SA, Gordon AS, Xinnian Dong. Characterization of an Arabidopsis mutant that is nonresponsive to inducers of systemic acquired resistance. Plant Cell. 1994; 6(11): 1583–1592. pmid:12244227
  42. 42. Wei ZM, Laby RJ, Zumoff CH, Bauer DW, He SY, Collmer A, et al. Harpin, elicitor of the hypersensitive response produced by the plant pathogen Erwinia amylovora. Science. 1992; 257(5066): 85–88. pmid:1621099
  43. 43. Century KS, Holub EB, Staskawicz BJ. NDR1, a locus of Arabidopsis thaliana that is required for disease resistance to both a bacterial and a fungal pathogen. Proc Natl Acad Sci U S A. 1995; 92(14): 6597–6601. pmid:11607554
  44. 44. Century KS, Shapiro AD, Repetti PP, Dahlbeck D, Holub E, Staskawicz BJ. NDR1, a pathogen-induced component required for Arabidopsis disease resistance. Science (80-). 1997; 278(5345): 1963–1965.
  45. 45. Gopalan S, Wei W, He SY. hrp gene-dependent induction of hin1: a plant gene activated rapidly by both harpins and the avrPto gene-mediated signal. Plant J. 1996; 10(4): 591–600. pmid:8893538
  46. 46. Desikan R, Reynolds A, Hancock JT, Neill SJ. Harpin and hydrogen peroxide both initiate programmed cell death but have differential effects on defence gene expression in Arabidopsis suspension cultures. Biochem J. 1998; 330(1): 115–120.
  47. 47. Desikan R, Clarke A, Atherfold P, Hancock JT, Neill SJ. Harpin induces mitogen-activated protein kinase activity during defence responses in Arabidopsis thaliana suspension cultures. Planta. 1999; 210(1): 97–103. pmid:10592037
  48. 48. Desikan R, Hancock JT, Ichimura K, Shinozaki K, Neill SJ. Harpin induces activation of the Arabidopsis mitogen-activated protein kinases AtMPK4 and AtMPK6. Plant Physiol. 2001; 126(4): 1579–1587. pmid:11500556
  49. 49. Lee J, Klessig DF, Nürnberger T. A harpin binding site in tobacco plasma membranes mediates activation of the pathogenesis-related gene HIN1 independent of extracellular calcium but dependent on mitogen-activated protein kinase activity. Plant Cell. 2001; 13(5): 1079–1093. pmid:11340183
  50. 50. Lawaju BR, Lawrence KS, Lawrence GW, Klink VP. Harpin-inducible defense signaling components impair infection by the ascomycete Macrophomina phaseolina. Plant Physiol Biochem. 2018; 129: 331–348. pmid:29936240
  51. 51. Curtis MD, Grossniklaus U. A Gateway Cloning Vector Set for High-Throughput Functional Analysis of Genes in Planta. Plant Physiol. 2003; 133(2): 462–469. pmid:14555774
  52. 52. Matsye PD, Lawrence GW, Youssef RM, Kim KH, Lawrence KS, Matthews BF, et al. The expression of a naturally occurring, truncated allele of an α-SNAP gene suppresses plant parasitic nematode infection. Plant Mol Biol. 2012; 80(2): 131–155. pmid:22689004
  53. 53. Haseloff J, Siemering KR, Prasher DC, Hodge S. Removal of a cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly. Proc Natl Acad Sci U S A. 1997; 94(6): 2122–2127. pmid:9122158
  54. 54. Jefferson RA, Kavanagh TA, Bevan MW. GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 1987; 6(13): 3901–3907. pmid:3327686
  55. 55. Collier R, Fuchs B, Walter N, Lutke WK, Taylor CG. Ex vitro composite plants: An inexpensive, rapid method for root biology. Plant J. 2005; 43(3): 449–457. pmid:16045479
  56. 56. Tepfer D. Transformation of Several Species of Higher Plants by Agrobacterium rhizogenes: Sexual Transmission of the Transformed Genotype and Phenotype. Cell. 1984; 37: 959–967. pmid:6744417
  57. 57. Haas JH, Moore LW, Ream W, Manulis S. Universal PCR primers for detection of phytopathogenic Agrobacterium strains. Appl Environ Microbiol. 1995; 61(8): 2879–2884. pmid:7487020
  58. 58. Matthews BF, Beard H, MacDonald MH, Kabir S, Youssef RM, Hosseini P, et al. Engineered resistance and hypersusceptibility through functional metabolic studies of 100 genes in soybean to its major pathogen, the soybean cyst nematode. Planta. 2013; 237(5): 1337–1357. pmid:23389673
  59. 59. Livak KJ, Schmittgen TD. Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2 C T Method. Methods. 2001; 25: 402–408. pmid:11846609
  60. 60. Jenkins W. A rapid centrifugation-floatation technique for separation of nematodes from soil. Plant Dis Rep. 1964; 48: 692.
  61. 61. Hussey R, Barker A. Comparation methods of colleting inocula of Meloidogyne eggs, including a new technique. Plant Dis Rep. 1973; 57: 1025–1028.
  62. 62. Myers R. Identification of species and races of Meloidogyne by differential host assay.pp 86–90 in B.Zukerman, W.F Mai, and L. R. Krusberg, eds. Plant nematode laboratory manual. Amherst, MA: University of Massachusetts Agricultural Experiment Stattion. 1990; Pp 86-90.
  63. 63. Tang B, Lawrence G., Ccreech R., Jenkins J., McCarty JCJ. Post-infection development of Meloidogyne incognita in cotton roots. USDA Mississippi Agric For Exp Stn Tech Bull. 1994; 195: 43.
  64. 64. Diez A, Lawrence GW, Lawrence KS. Competition of Meloidogyne incognita and Rotylenchulus reniformis on Cotton Following Separate and Concomitant Inoculations. J Nematol. 2003; 35(4): 422–429. pmid:19262774
  65. 65. Peraza-padilla W, Rosales-Flores J, Hernandez A, Hilje-Rodriguez I, Castillo P. Morphological, morphometrical and molecular identification of Meloidogyne incognita in fig (Ficus carica L.) in Costa Rica. Agron Mesoam. 2013; 24(2): 337–346.
  66. 66. Xiang N, Lawrence KS. Optimization of In Vitro Techniques for Distinguishing between Live and Dead Second Stage Juveniles of Heterodera glycines and Meloidogyne incognita. PLoS One. 2016; 11(5): e0154818. pmid:27144277
  67. 67. Christie JR. Host-parasite relationships of the root-knot nematode, Heterodera marioni; some effects of the host on the parasite. Phytopathology. 1946; 36: 340–352. pmid:21027516
  68. 68. Christie J, Wash GC. Notes on the life history of the root-knot nematode, Heterodera marioni. Proc Helminthol Soc Wash. 1946; 36: 340–352.
  69. 69. Mühlenbock P, Szechyńska-Hebda M, Płaszczyca M, Baudo M, Mullineaux PM, Parker JE, et al. Chloroplast signaling and lesion simulating disease1 regulate crosstalk between light acclimation and immunity in Arabidopsis. Plant Cell. 2008; 20(9): 2339–2356. pmid:18790826
  70. 70. O’Neill EM, Mucyn TS, Patteson JB, Finkel OM, Chung EH, Baccile JA, et al. Phevamine A, a small molecule that suppresses plant immune responses. Proc Natl Acad Sci U S A. 2018; 115(41): 9514–9522.