Figures
Abstract
Amanita ballerina and A. brunneitoxicaria spp. nov. are introduced from Thailand. Amanita fuligineoides is also reported for the first time from Thailand, increasing the known distribution of this taxon. Together, those findings support our view that many taxa are yet to be discovered in the region. While both morphological characters and a multiple-gene phylogeny clearly place A. brunneitoxicaria and A. fuligineoides in sect. Phalloideae (Fr.) Quél., the placement of A. ballerina is problematic. On the one hand, the morphology of A. ballerina shows clear affinities with stirps Limbatula of sect. Lepidella. On the other hand, in a multiple-gene phylogeny including taxa of all sections in subg. Lepidella, A. ballerina and two other species, including A. zangii, form a well-supported clade sister to the Phalloideae sensu Bas 1969, which include the lethal “death caps” and “destroying angels”. Together, the A. ballerina-A. zangii clade and the Phalloideae sensu Bas 1969 also form a well-supported clade. We therefore screened for two of the most notorious toxins by HPLC-MS analysis of methanolic extracts from the basidiomata. Interestingly, neither α-amanitin nor phalloidin was found in A. ballerina, whereas Amanita fuligineoides was confirmed to contain both α-amanitin and phalloidin, and A. brunneitoxicaria contained only α-amanitin. Together with unique morphological characteristics, the position in the phylogeny indicates that A. ballerina is either an important link in the evolution of the deadly Amanita sect. Phalloideae species, or a member of a new section also including A. zangii.
Citation: Thongbai B, Miller SL, Stadler M, Wittstein K, Hyde KD, Lumyong S, et al. (2017) Study of three interesting Amanita species from Thailand: Morphology, multiple-gene phylogeny and toxin analysis. PLoS ONE 12(8): e0182131. https://doi.org/10.1371/journal.pone.0182131
Editor: Alessio Cimmino, Universita degli Studi di Napoli Federico II, ITALY
Received: March 31, 2017; Accepted: July 12, 2017; Published: August 2, 2017
Copyright: © 2017 Thongbai et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Data Availability: All DNA sequences have been deposited to GenBank, with the following accession numbers: KY656852 to KY656889 KY747455 to KY747478.
Funding: This work was supported by the Thai Royal Golden Ph.D. Jubilee-Industry (RGJ) program, Thailand (URL: rgj.trf.or.th/main/home/) Grant number Ph.D./0072/2553 in 4.S.M.F./53/A.2 to BT; National Science Foundation, USA (URL: www.nsf.gov) Grant number DEB-1050292 to SLM; National Research Council of Thailand (URL: en.nrct.go.th) Grant number RTA-5880006 to SL and OR and Fonds National de la Recherche Scientifique, Belgium (URL: fnrs.be) Grant number: 2014/V 3/5/215 - IB/MF to OR. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Competing interests: The authors have declared that no competing interests exist.
Introduction
Amanita sect. Phalloideae (Fr.) Quél., is characterized by a non-appendiculate and non-striate pileus, a persistent partial veil, and a limbate or saccate volva on the bulbous stipe base [1–4]. The diagnostic microscopic features include amyloid basidiospores and a pileipellis composed of gelatinous filamentous hyphae [1–4]. The type species of this section is the “Euro-Asian Death Cap”, A. phalloides (Fr.) Link., first described from Europe [5]. The sect. Phalloideae currently comprises approximately 61 taxa that have been described worldwide [6,7]. The cyclooligopeptide toxins found in members of sect. Phalloidae, which include amatoxins, phallotoxins, and virotoxins, have been studied for over a decade [8–10]. The amatoxins, including α-amanitin and β-amanitin, are considered ten times more deadly than phallotoxins [11].
Members of sect. Phalloideae are consumed after mistaking them for edible species. In Asia, confusion most often occurs with other Amanita spp. in sect. Caesareae Singer ex Singer, which contains a number of edible species [12]. Recently, a multiple gene phylogenetic analysis rigorously examined species in sect. Phalloideae [13, 14] and sect. Caesareae [15], with the aim of exploring biogeographic history and plesiomorphies that may help to resolve evolutionary relationships among deeper clades of these two sections. In order to understand the evolutionary relationships in sect. Phalloideae, researchers have begun to critically evaluate the toxins, toxin encoding genes, and biogeography to support the taxonomy [11, 13, 14, 15].
In a recent publication resulting from biodiversity studies in northern Thailand we documented two first records of sect. Phalloideae, A. rimosa P. Zhang & Zhu L. Yang with white basidiomata and A. zangii Zhu L. Yang, T.H. Li & X.L. Wu [16], although the placement of the latter in sect. Phalloideae is controversial because of very atypical morphology [13, 16]. In the present paper, we report two additional species in Amanita sect. Phalloideae, and a third species whose taxonomic placement is also problematic, with two of the species new to science The macro- and micro-morphology of those three taxa are described, and photographs and line drawings are provided. Moreover, their phylogenetic affinities are discussed based on multigene phylogenetic analyses (rpb2, β-tubulin, nrITS, and nr5.8S). Finally, we report on the screening of the three species for toxins known to occur in Amanita, including α-amanitin and phalloidin.
Materials and methods
Collections
Specimens were collected mainly in forests dominated by Fagaceae (Castanopsis, Lithocarpus, Quercus) and/or Dipterocarpaceae (Dipterocarpus, Shorea) during the rainy season. The rainy season in the north (including Chiang Mai and Chiang Rai provinces) normally occurs from May to beginning of October, whereas the rainy season in the south (including Song Khla Province) occurs from May to December. Fresh specimens were photographed and described, and then dried using a food dehydrator (at ca. 40–50°C). Tissue samples were taken from fresh basidiomata with aseptic technique and kept in 10% CTAB (cetyl trimethylammonium bromide) for later DNA analyses. The examined specimens were deposited in either one or two of the following herbaria: Mae Fah Luang University, Thailand (MFLU), Botanic Garden Meise, Belgium (BR), and Chiang Mai University, Thailand (SDBR-CMU). Herbarium codes follow Index Herbariorum [17], with the exception of "RET", which is the code adopted for R.E. Tulloss' Herbarium Rooseveltensis Amanitorum, and HKAS, which stands for the Cryptogamic Herbarium of Kunming Institute of Botany. All author citations of species rank not included in the main body of the text are located in Table 1.
Newly generated sequences in this study are highlighted in bold.
Morphological study
Macro-morphology was described from fresh specimens. Color codes are according to Kornerup & Wanscher (1978). The colour change reaction with 10% KOH was tested on the stipe surface of A. ballerina, as is done in other species with white basidiomata [18]. Microscopic features were studied from dried tissue mounted in H2O and 5% KOH aqueous solution. Congo red was used for highlighting all tissues, and amyloidity of basidiospores was observed using Melzer reagent. Dimensions of microscopic structures were measured using Image Frame Work (Tarosoft®, Thailand). Basidiospore measurements are accompanied with the following notation: "[n/m/p]", which indicates that n basidiospores were measured from m basidiomata of p collections, with a minimum of 25–50 basidiospores from each basidiome. Size and shape of basidiospores are presented in a form following the description of ranges for biometric variables according to Tulloss [18] (a–) b–c (–d), in which b represents the 5th percentile, c, the 95th percentile, while a and d are the lowest and highest extreme values measured, respectively. The average length is indicated as L' whereas W' is the average width. The range of length/width ratio of basidiospores (Q) is provided. In addition to Tulloss' standard format, standard deviationis provided for Q' (the mean of all Q values computed for a single taxon). Faces of Fungi [19], Index Fungorum [20] and MycoBank [21] numbers are provided.
DNA isolation, amplification and sequencing
Specimens were processed for molecular analyses at two core facilities including the Botany Department, University of Wyoming (UW), USA and Botanic Garden Meise, Belgium, using a variety of methodologies for extraction of genomic DNA, PCR and sequencing. Genomic DNA extractions at the University of Wyoming were performed using a CTAB protocol with phenol-chloroform-isoamyl alcohol purification, followed by cleaning with a silica-matrix binding procedure [22]. At Botanic Garden Meise, DNA extractions were performed using a slightly different CTAB protocol. PCR amplification of ITS (nuclear ribosomal internal transcribed spacer) and LSU (large subunit ribosomal DNA) was performed using the primer pairs ITS4/ITS5 or ITS1-F/ITS4, and LR0R/LR5, respectively. Parts of the protein-coding genes β-tubulin and rpb2rpb2 (second largest subunit of RNA polymerase II) were amplified using the primer pairs Am-β-tub-F/Am-β-tub-R and Am-6F/Am-7R, respectively [13]. Purified PCR products were then sequenced at the Nucleic Acid Exploration Facility at the University of Wyoming on an ABI 3130 XL DNA analyzer (Applied Biosystems), or at Macrogen Europe (Amsterdam) on an ABI 3730 XL DNA analyzer (Applied Biosystems), using the same primer combinations as for PCR, except for Am-β-tub-F, which was replaced by the shorter primer Am-β-tub-F-Seq (5’-CGGAGCRGGTAACAAYTG-3’). Forward and reverse reads were assembled and edited with Geneious Pro 5.1.7 (Biomatters Ltd., Auckland, New Zealand).
DNA sequence dataset assembly
Seventy-six sequences of collections from Thailand were newly generated for this study and deposited in GenBank (GB) (http://www.ncbi.nlm.nih.gov/; Table 1). Initial BLAST searches (http://blast.ncbi.nlm.nih.gov) of both LSU and ITS1+5.8S+ITS2 sequences were performed to estimate similarity with Amanita sequences already in GB. Additional sequences were identified using phylogenetic inferences and were also retrieved from GB (Table 1). The quality of the sequences was considered in selecting sequences from GB for use in the analyses. Because some of the species studied here, namely Amanita ballerina sp. nov. and A. zangii, have morphological characters atypical for sect. Phalloideae and/or have been successively placed in different sections in the past, the taxon sampling was performed to cover not only section Phalloideae, but also the three other sections in subgen. Lepidella, namely sect. Lepidella, sect. Validae, and sect. Amidella, as well as five taxa from subgen. Amanita, sect. Amanita selected as outgroup. Because LSU is of restricted phylogenetic utility (see e.g., Tulloss [23] for a brief discussion), it was not included in the phylogenetic analyses.
Phylogenetic analyses
Sequences were initially aligned with MAFFT v.7.0 [24] using the G-INS-i iterative refinement algorithm, with minimal manual adjustment in BioEdit v.7.0.9 (Hall 1999). Introns of protein-coding genes were excluded from the analyses, mainly because they were not included in most of the sequences retrieved from GenBank. For the ITS region, the different loci of the region were identified on the basis of terminal motifs of 18S, 5.8S and 28S loci catalogued [25]. Only the positions corresponding to ITS1, 5.8S, and ITS2 were kept in the alignment. The program Gblocks v0.91b [26] was then used to exclude poorly aligned positions of the ITS alignment with the following parameter settings: minimum number of sequences for a conserved position = 24 (minimum possible); minimum number of sequences for a flank position = 24 (minimum possible); maximum number of contiguous non-conserved positions = 4 bp, minimum block size = 4 bp, and gaps allowed within selected blocks in half of the sequences. Phylogenetic tree inference was performed using both Maximum Likelihood (ML) and Bayesian Inference (BI). The ML analyses were performed using RAxML-HPC2 [27] on the CIPRES Science Gateway [28], with default settings except the number of bootstrap replicates was set to 1,000 for both single-gene and combined gene analyses. Phylogenetic inference was first performed on each single-gene alignment, and, since no significantly supported conflict [with ML Bootstrap Support (BS) ≥ 70%] was detected, multiple-genes alignments and trees were built. Because ITS sequences were not alignable with reasonable confidence over the whole set of OTUs including sect. Amanita as outgroup, the four-gene alignment (β-tub, rpb2, ITS1+ITS2, and 5.8S) was restricted to sections Phalloideae and Valideae, the latter being used as the outgroup. BI was performed using MrBayes v.3.2.6 [29], with a mixed model partition. The best substitution model was determined for each partition of the data set separately using jModeltest v. 2 [30] on jmodeltest.org, with default parameters. When the best model could not be specified in MrBayes, the next more complex model was used. The selected models were K80 + G for β-tub, GTR + I + G for rpb2, GTR + G for ITS1 and ITS2, and 5.8S. The Bayesian analyses were conducted with 2 runs, each with five simultaneous Markov chains, and trees were summarized every 250 generation. The analyses were stopped after 1,000,000 generations, when the average standard deviation of split frequencies was 0.004999 for the two-gene analysis, and 0.002576 for the four-gene analysis. The burn-in phase (20% and 25% for the two-gene and four-gene analysis, respectively) was estimated by checking the stationarity in the plot generated by the sump command. The remaining trees were used to generate a majority-rule consensus tree and to compute corresponding posterior probabilities. Phylograms were visualized with FigTree ver. 1.3.1 [31].
Nomenclature
The electronic version of this article in Portable Document Format (PDF) in a work with an ISSN or ISBN will represent a published work according to the International Code of Nomenclature for algae, fungi, and plants, and hence the new names contained in the electronic publication of a PLOS article are effectively published under that Code from the electronic edition alone, so there is no longer any need to provide printed copies.
In addition, new names contained in this work have been submitted to MycoBank, from where they will be made available to the Global Names Index. The unique MycoBank number can be resolved and the associated information viewed through any standard web browser by appending the MycoBank number contained in this publication to the prefix http://www.mycobank.org/MB/. The online version of this work is archived and available from the following digital repositories: PubMed Central and LOCKSS.
Toxin analysis
Dried basidiomata of Amanita ballerina (OR1026), A. brunneitoxicaria (BZ2015-01), and A. fuligineoides (BZ2013-41) were analyzed for major toxins including α-amanitin and phalloidin. The basidiomata were pulverized to a fine powder and ca. 100 mg were extracted in methanol for 30 min. in an ultrasonic bath and the resulting liquid filtered through filter paper. The liquid phase of methanol was then evaporated to dryness. The crude extracts were dissolved in methanol and transferred to 4 mL glass vials, and dried under nitrogen, then weighed. Then crude extracts were again re-dissolved in methanol. Crude extracts were filtered by using SPME Strata™-X 33 u Polymeric RP cartridges (Phenomenex, Inc., Aschaffenburg, Germany) and analysed using high performance liquid chromatography (HPLC). Extracts profiles were compared to standards based on mass spectrum in the negative and positive ESI modes, as well as on their characteristic UV/Vis and retention time (Rt). Standards of α-amanitin and phalloidin were obtained from Sigma–Aldrich, Germany.
Results
DNA sequence analyses
In this study, each of the single-gene phylogenies showed similar tree topologies (Supporting Information S1–S3 Figs), without supported conflicts. The two-gene (β-tub and rpb2) and four-gene (β-tub, rpb2, ITS1+ITS2, and 5.8S) alignments contained 63 and 46 OTUs, and were 924 and 1,443 sites long, respectively. For the ITS1 + ITS2 alignment, Gblocks retained 375 sites (57% of a total of 653 sites). The topology of the two-gene and four-gene trees obtained in this study are consistent with previously published trees with similar taxon sampling [6, 13]. Interestingly, Amanita ballerina sp. nov., A. sp. HKAS77321, and A. zangii formed a clade that is sister to the Phalloideae sensu Bas [1], i.e. the death caps. This clade, however, was highly supported only in the four-gene tree (BS = 94%, PP = 0.97). In the two-gene tree BS was only 38% and the clade was not retrieved in the BI tree, where A. zangii was sister to the lethal amanitas, while A. ballerina and A. sp. HKAS77321 formed a sister clade to the poorly supported (PP = 0.73) clade comprised of A. zangii and the Phalloideae sensu Bas [1]. A. brunneitoxicaria sp. nov. forms a well-supported clade with A. fuligineoides (BS = 100%, PP = 1.0). Initial BLAST searches of both LSU and ITS1+5.8S+ITS2 sequences are given in Table 2. In this study, the tree topologies obtained from ML and BI did not show any supported conflict. Therefore, only the ML trees are shown (Figs 1 and 2).
Bootstrap values (BS) ≥70% and corresponding Posterior Probabilities (PP) ≥0.95 are shown above the branches, except when BS = 100% and PP = 1.0, which are indicated as thick branches. Amanita species with sequences generated in this study are highlighted in bold. Voucher collection identifiers are provided after each species name.
Bootstrap values (BS) ≥70% and corresponding Posterior Probabilities (PP) ≥0.95 are shown above the branches, except when BS = 100% and PP = 1.0, which are indicated as thick branches. Amanita species with sequences generated in this study are highlighted in bold. Voucher collection identifiers are provided after each species name.
Taxonomy
Amanita ballerina Raspé, Thongbai & K.D. Hyde, sp. nov. [urn:lsid:mycobank.org:names: MB 820110]. Facesoffungi number: FoF 03125; Index Fungorum number: IF552936. Type: Thailand, Chiang Mai Province, Meuang District, Doi Suthep Sub-district, Palad temple, N18°48'04"- E98°55'48", elev. 740 m, 21 July 2015, Olivier Raspé OR1026 (holotype, SDBR-CMU OR1026; isotypes, BR 5020187254626, MFLU 16–2559).
Etymology:‘ballerina’ refers to the cottony skirt-like partial veil, and downward tapering of the bulb, reminiscent of a ballet dancer silhouette (Fig 3).
(A) A. ballerina (SDBR-CMU OR1265). (B) A. brunneitoxicaria (MFLU 15–3307, holotype). (C) A. fuligineoides (SDBR-CMU OR1044). (D) A. ballerina (SDBR-CMU OR1026, holotype). (E) A. zangii (SDBR-CMU OR1224). Scale bars: A, C = 1 cm, D-E = 2 cm.
Basidiomata (Fig 3A and 3D) small-sized. Pileus 34–42 mm wide, subglobose to hemispheric when young, convex to broadly convex at maturity, sometimes slightly depressed at center, dry, slightly viscid when moist, with surface under remains of general veil minutely floccose at first, becoming felted or chamois-like in age, dull white (1A2), universal veil a thin cottony layer breaking into small adherent areolate squamules or large flaky patches that are dull white to pale yellowish white (2A2); margin plane, non-striate at first then striate at maturity, non-appendiculate; context 2–3 mm thick above stem, soft to slightly hard, dull white (1A2). Lamellae 4–6 mm broad, narrowly sinuate, attachment to stipe, occasionally forking, close, dull white to pale yellowish white (3A2) at maturity; lamellulae of 2–3 lengths, rounded to nearly truncate. Stipe 43–75 × 10–26 mm (not including the bulb), nearly cylindrical, with short decurrent line at apex, bulbous, dull white, covered with fine flocculae; context stuffed, thin, yellowish white or cream (4A2). Bulb compressible, slightly subglobose when young, then elongate to ventricose and tapering downward, marginate up to 13 mm wide, occasionally cleft, dull white to white (2A2). Universal veil on stipe base a volval limb, up to 4 mm high on bulb margin, cottony-felted, white to dull white (2A2), or with patches dull white to dirty white (1A2). Partial veil medial, 25–35 mm below apex of stipe, persistent, cottony, skirt-like, with a ragged thickened edge, striate inside, white to dull white (1A2). Spores white in deposit. Odor and taste not recorded. 10% KOH tested not turned to yellow in dried specimens.
Lamellar trama bilateral, divergent; mediostratum 60–80 μm wide, filamentous hyphae 4–8 μm wide, branching, hyaline, thin-walled; inflated cells with terminal ellipsoid to fusiform, 40–90 × 20–28 μm; vascular hyphae rare. Subhymenium (Fig 4A) 35–50 μm thick in 3–4 layers, with subglobose, ovoid or broadly ellipsoid cells dominating, 17–25 × 8–22 μm, subtended by concatenated partially inflated hyphal segments. Basidia (Fig 4A) 45–65 × 10–15 μm, long clavate, 4-spored, with sterigmata 5–7 μm long; clamps absent. Basidiospores (Fig 4B) [100/2/2] (6.6–) 7.5–8.9 (–9.1) × (5.7–) 6–7.5 (–7.7) μm, (L' = 8.1 μm; W' = 6.7 μm; Q = (1.01–) 1.06–1.36 (–1.45); Q' 1.22 ± 0.10), smooth, hyaline, colorless, thin-walled, amyloid, subglobose to broadly ellipsoid, rarely globose or elongate, rarely adaxially flattened; apiculus rather variable, sublateral, small or rarely large, up to 1.2 μm long, cylindric to truncate-conic; contents monoguttulate or granular. Lamellar edge sterile; filamentous hyphae 4–8 μm wide, branching, hyaline, colorless thin-walled; inflated cells, with subfusiform to subglobose dominating, 20–44 × 13–32 μm, hyaline, colorless, thin-walled. Pileipellis (Fig 4C) 90–120 μm thick, 2-layered; suprapellis up to 50–70 μm thick, filamentous hyphae, 3–10 μm wide, slightly gelatinized, often branching, hyaline, colorless, thin-walled, with terminal cells ellipsoid to clavate, 50–75 × 13–20 μm; subpellis up to 40–50 μm thick, filamentous hyphae 3–7 μm wide, undifferentiated hyphae, non-gelatinized, branching, hyaline or occasionally with intracellular yellowish brown pigment, thin-walled; vascular hyphae not observed. Universal veil on stipe base filamentous hyphae dominant, 3–10 μm wide, branching, thin-welled; inflated cells, with ellipsoidal, subfusiform to clavate terminus, 30–70 × 18–65 μm, colorless, thin walled; vascular hyphae rare. Outer surface of universal veil on stipe base abundant filamentous hyphae 5–12 mm wide, branching; mixed with inflated cells, oblong to ellipsoid or subglobose to obovoid terminus 40–90 × 20–82 μm. Universal veil on pileus (Fig 4D) filamentous hyphae 4–8 μm wide, frequently, hyaline, colorless, occasionally with intracellular brown pigment, slightly thick-walled; inflated cells with terminal subglobose to broadly ovoid cells dominating, occasionally broadly elongate, 37–68 × 34–55 μm, singly or 2–3 in chain. Stipe trama longitudinally acrophysalidic; filamentous undifferentiated hyphae, 3–11 μm wide, thin-walled, frequently branching; acrophysalides up to 167–278 × 26–33 μm, thin-walled; vascular hyphae not observed. Partial veil (Fig 4E) filamentous hyphae 2–5 μm wide, branching, hyaline, colorless, thin-walled, with ellipsoidal to oblong ellipsoidal terminus, sometimes subglobose, 48–71 × 17–35 μm, colorless, thin-walled; vascular hyphae not observed.
(A) Hymenium and subhymenium. (B) Basidiospores. (C) Longitudinal section of pelius. (D) Longitudinal section of outer part of the partial veil. (E) Longitudinal section of universal veil on pileus. Scale bars: A = 20 μm, B-E = 10 μm.
Habitat: solitary or scattered on the ground in evergreen Fagaceae hill forest or mixed deciduous Dipterocarpaceae/Fagaceae forest.
Additional specimens examined: Thailand, Chiang Mai Province, Meuang District, Doi Suthep Sub-district, Scenic Viewpoint 2, N18°47.7'-E98°55.2' elev. 950 m, 20 July 2015, Olivier Raspé OR1014 (SDBR-CMU OR1014, BR 5020187248731);—, Bike trail below Phuping Palace, N18°47'50"-E98°54'21'', elev. 1170 m, 21 July 2016, Olivier Raspé OR1265 (SDBR-CMU OR1265, BR 5020187249769).
Known distribution: Currently only known from Doi Suthep-Pui National Park, northern Thailand.
Remarks: Amanita ballerina is characterized by its small, white basidiomata, floccose pileus with cottony layer breaking into small adherent, dull white areolate squamules or large flaky patches, and elongate to ventricose, tapering downward bulb with short, cottony-felted volval limb. Importantly, the pileus of A. ballerina is non-striate when young but striate at maturity and sublimbate. Because the development of the volva (or egg-like) stage of the basidioma is underground,adhering soil causes the patches of the universal veil remnants to turn greyish orange (5B4-6). At first sight, Amanita ballerina shows some morphological similarities with the group of poisonous white or whitish taxa in sect. Phalloideae, such as A. molliuscula, A. pallidorosea, A. parviexitialis, A. rimosa, and A. virosa. However, A. ballerina can be easily distinguished from each of those taxa because of their globose to subglobose basal bulb, apical to subapical partial veil, and globose to subglobose basidiospores. Moreover, the floccose layer and the striations on the pileus of A. ballerina are in contradiction with the circumscription of sect. Phalloideae in the sense of Bas [1]. It should also be noted that A. ballerina has a floccose universal veil that leaves a friable limb on the stipe base, which no species in the Phalloideae has. In contrast, multiple such species are known in section Lepidella [1]. The bulb shape of A. ballerina and the nature of the volva are reminiscent of species of Amanita section Lepidella strips Limbatula, including: A. limbatula Bas, A. parva Murrill, and A. praelongispora Murrill, which have a universal veil leaving volval limb on stipe base or sublimbate stipe base [1]. Amanita section Lepidella strips Microlepis, e.g. Amanita sphaerobulbosa Hongo and Amanita abrupta Peck, are somewhat similar to A. ballerina in size and color, but both have small persistent pyramidal to subconical warts on the pileus and clamps at the base of basidia.
Phylogenetically, A. ballerina does not show a close relationship with either members of the Phalloideae with white basidiomata that contain deadly toxins or with sect. Lepidella. In the multigene phylogenetic tree, Amanita ballerina, A. zangii, and A. sp. HKAS77321 collected from tropical East Asia [13] form a clade sister to the Phalloideae sensu Bas [1] that is not closely related to sect. Lepidella. Unfortunately, no morphological description of A. sp. HKAS77321 is available for critical comparison of important morphological characters. Finally, even though nrLSU was not included in our phylogenetic analyses, blast results of A. ballerina nrLSU sequence against GenBank did not show close similarity with the available sequences from subsect. Limbatulae [i.e Amanita cylindrispora Beardslee (AY325867), A. gilbertii Beauseign (AY3458871), A. mutabilis Beardslee (HQ539714), and A. praelongispora Murrill (HQ539726)].
Amanita brunneitoxicaria Thongbai, Raspé & K.D. Hyde, sp. nov. [urn:lsid:mycobank.org:names: MB 820111]. Facesoffungi number: FoF 03126; Index Fungorum number: IF552937. Type: Thailand, Songkhla Province, Hat Yai District, Kho Hong, N7°00'25.2"- E100°30'27.9", elev. 50 m, 16 June 2015, B. Thongbai BZ2015-01 (holotype, MFLU 15–3307; isotype, BR 5020187250505).
Etymology:‘brunneitoxicaria’ refers to the brown basidiomata and presence of deadly toxins.
Basidiomata (Fig 5B) small- sized. Pileus 35–45 mm wide, convex to plane at maturity, dull, dry, slightly viscid when moist, virgate, greyish brown, virgae mouse grey to bronze (5E3-5 to 5-6F5-7) over white background, darkest at center (5F6 or 7F4-7), greyish brown (5E3-6E3) towards margin, universal veil remnants lacking; margin slightly downturned to plane, non-striate, non-appendiculate; context 2–4 mm thick above stem, soft to slightly hard; pale yellowish or cream (4A2-4A3). Lamellae 4–6 mm broad, free, close to subdistant when mature, white; lamellulae of 3–6 lengths, attenuate to nearly truncate. Stipe 50–60 × 10–12 mm, nearly cylindrical, flaring at apex, white to dull greyish white (1A1-1B1), with white to pale greyish brown fine flocculae; context stuffed, thin, yellowish white. Bulb subglobose to slightly elongated, cottony, up to 20–23 mm wide, white or dirty white (1A1, 4A2). Universal veil on stipe base volvate to saccate with volval limb, up to 3 mm high on bulb margin, cottony, sometimes free from stipe base, inner surface greyish, outer surface white (1A1). Partial veil apical, 10–13 mm below apex of stipe, membranous, frail, skirt-like, with wavy edge, white (1A1). Spores white in deposit. Odor and taste not recorded.
(A) Hymenium and subhymenium. (B) Basidiospores. (C) Longitudinal section of pelius. (D) Longitudinal section of outer part of the partial veil. (E) Longitudinal section of outer surface of universal veil on stipe base. Scale bars: A = 20 μm, B-E = 10 μm.
Lamellar trama bilateral, divergent; mediostratum 30–50 μm wide, filamentous hyphae abundant, 2–7 mm wide; ellipsoidal inflated cells 35–48 × 15–25 μm; vascular hyphae rare. Subhymenium (Fig 5A) 30–45 μm thick in 2–3 layers, with globose, subglobose to ellipsoidal cells dominating, 11–21 × 10–19 μm, subtended by concatenated partially inflated hyphal segments. Basidia (Fig 5A) 22–58 × 10–17 μm, clavate, 4-spored with sterigmata 4–5 μm long; clamps absent. Basidiospores (Fig 5B) [100/2/2] 7.9–9.8 (–10) × (6.6–) 6.8–7.7 (–7.8) μm, (L' = 8.13 μm; W' = 6.68 μm; Q = (1.1–) 1.2–1.42 (–1.47); Q' 1.27 ± 0.30), smooth, hyaline, colorless, thin-walled, amyloid, broadly ellipsoid to ellipsoid, rarely subglobose, rarely adaxially flattened; apiculus rather variable, sublateral, small or rarely large, up to 1 μm long, cylindric to truncate-conic; contents monoguttulate or rarely granular. Lamellar edge sterile; filamentous hyphae 3–7 μm wide, hyaline, colorless, thin-walled; inflated cells, mixed with sometimes ovoid, globose to subglobose dominating, 17–24 × 34–47 μm, colorless, thin-walled; vascular hyphae rare. Pileipellis (Fig 5C) 80–200 μm thick, 2-layered; suprapellis up to 50–120 μm thick, filamentous hyphae, 3–10 μm wide, slightly gelatinized, often branching, hyaline, colorless, thin-walled; inflated cells, with terminal cells ellipsoid to clavate, 50–150 × 20–30 μm; subpellis up to 30–80 μm thick, filamentous hyphae 3–7 μm wide, undifferentiated hyphae, non-gelatinized, branching, hyaline or often with intracellular yellowish brown pigment, thin-walled; vascular hyphae scattered. Universal veil on stipe base filamentous hyphae abundant 3–10 μm, branching, colorless, thin-walled; inflated cells, with subfusiform to clavate terminus, 40–78 × 32–70 μm, colorless, thin-walled, vascular hyphae rare. Outer surface of universal veil on stipe base (Fig 5D) filamentous hyphae dominant, 3–10 μm, undifferentiated hyphae, branching, colorless, thin-walled; mixed with inflated cells, with subglobose to ellipsoid terminus 130–144 × 60–79 μm. Universal veil on pileus not observed. Stipe trama longitudinally acrophysalidic; filamentous hyphae, 3–11 μm wide, thin-walled, frequently branching; acrophysalides up to 150–220 × 20–62 μm, thin-walled; vascular hyphae not observed. Partial veil (Fig 5E) filamentous hyphae 3–6 μm wide, branching, hyaline, colorless, thin-walled; inflated cells with ellipsoidal to oblong ellipsoidal or sometimes subglobose, or elongate terminus, 20–29 × 17–25 μm, colorless, thin-walled; vascular hyphae not observed.
Habitat: solitary on the ground in evergreen forest.
Additional specimens examined: Thailand, Songkhla Province, Hat Yai District, Kho Hong, N7°00'25.2"- E100°30'27.9", elev. 50 m, 16 June 2015, B. Thongbai BZ2015-02 (MFLU 15–3308, BR 5020187251533).
Known distribution: Currently only known from southern Thailand.
Remarks: Amanita brunneitoxicaria is characterized by its small dark greyish brown basidioma, mouse grey to bronze virgate surface that is darkest at center, greyish brown towards pileus margin, subglobose to slightly elongated bulb with saccate volva, and the wavy edge of the apical partial veil. The dark pileus of A. brunneitoxicaria is similar to other lethal species including A. fuliginea, A. fuligineoides, A. griseorosea and A. subfuliginea, originally described from China, and A. alauda Corner & Bas, A. elephas Corner & Bas, and A. privigna Corner & Bas, originally described from Singapore.
Morphologically, A. brunneitoxicaria is similar to A. fuliginea, A. fuligineoides, and A. subfuliginea in having small to medium basidiomata with innately virgate pileus surface and 4-spored basidia. Amanita fuliginea is most similar but differs by its globose to subglobose basidiospores. In addition, A. fuliginea was reported to contain both α-amanitin and phalloidin [15], whereas our study of A. brunneitoxicaria revealed the presence of α-amanitin only. A. fuligineoides and A. subfuliginea have a brownish stipe covered with fibrillose squamules in a spiral or concentric pattern, while A. brunneitoxicaria has a stipe that is white to pale greyish brown, and the fine flocculae do not form a spiral or concentric pattern. Amanita griseorosea can be distinguished from A. brunneitoxicaria by its pinkish lamellae, the medial position of the partial veil, as well as 2-spored basidia. According to the phylogenetic analysis, most species with dark brown basidiomata do not seem to be closely related and fall into several different clades.
Amanita fuligineoides P. Zhang & Zhu L. Yang [12] [urn:lsid:mycobank.org:names: MB 515097]
Basidiomata (Fig 3C) large-sized. Pileus 60–80 mm wide, parabolic to hemispheric when young, convex to plane or uplifted at maturity, dry, slightly viscid when moist, smooth, concentrically virgate, light brown to brown aspect, virgate fibrils grayish brown (5C-E2-4) to yellowish brown to dark brown (5D-6F6-7) over light brown (6C-D5-6) to yellowish brown (5C-D5-6) ground and at margin, fibrils coalesced and darker at center; universal veil remnants not observed; margin incurved to flaring upward, non-striate, non-appendiculate; context 2–3 mm thick above stem, soft to slightly hard; white. Lamellae 6–8 mm broad, free, crowded, white (1A1); lamellulae of 2–4 lengths, attenuate. Stipe 100–110 × 10–12 mm (length does not include bulb), nearly cylindrical or slightly tapering upwards, bulbous, white to dull white ground, covered with grayish brown (5C-E2-4), yellowish brown to dark brown (5F6-7) fibrils or squamules in concentric or spiralled zonations; context stuffed, soft, white to yellowish white (1A1-1A2). Bulb compressible, subclavate to napiform, slightly elongated downward, marginate, up to 15–17mm wide, white to dirty white (1A1-1A2). Universal veil on stipe base large volval limb on bulb margin up to 33 mm high, white. Partial veil subapical, 10–13 mm below apex of stipe, membranous, thin, skirt-like, persistent, inside whitish; outside pale grayish brown, slightly striate. Spores white in deposit. Odor and tasted not recorded.
Lamellar trama bilateral divergent; mediostratum 25–33 μm wide; filamentous hyphae 3–5 μm wide; mixed with abundant inflated elements, with clavate to fusiform terminus, 40–60×12–18 μm. Subhymenium 20–28 μm thick in 3–4 layers, with broadly clavate or ovoid cells dominating, 9–17 × 8–15 μm, subtended by concatenated partially inflated hyphal segments. Basidia 30–45 × 12–16 μm, narrowly clavate to clavate, mostly 4-, occasionally 2-spored, with sterigmata 6–7 μm long; clamps absent. Basidiospores [100/2/2] (7.2–) 7.6–9.2 (–10.5) × (6.6–) 7.2–9.0 (–9.5) μm, (L' = 8.5 μm; W' = 8.2 μm; Q = (1.00–) 1.01–1.12 (–1.18); Q' = 1.08 ± 0.04), smooth, hyaline, colorless, thin-walled, inamyloid, globose to subglobose; apiculus variable, sublateral, rather small, up to 1.3 μm long, truncate-cylindric to rarely truncate-conic; contents monoguttulate or rarely granular. Lamellar edge sterile; filamentous hyphae 3–8 μm wide, hyaline, colorless, thin-walled; inflated cells with mostly globose to subglobose dominating, 10–15 × 8–13 μm, colorless, occasionally single or 2–3 in chain, thin-walled; vascular hyphae rare. Pileipellis 70–90 μm thick, 2-layered; suprapellis up to 30–40 μm thick, filamentous hyphae, 3–6 μm wide, slightly gelatinized, branching, brown intracellular pigment, thin-walled; subpellis up to 40–50 μm thick, filamentous hyphae 3–7 μm wide, undifferentiated hyphae, non-gelatinized, branching, hyaline, colorless, thin-walled; vascular hyphae not observed. Universal veil on the stipe base filamentous hyphae 3–10 μm wide, interwoven, colorless, hyaline; sometimes inflated cells with ellipsoid terminus 35–60 × 14–20 μm; vascular hyphae rare. Universal veil on pileus not observed. Outer surface of universal veil on stipe base filamentous hyphae, dominantly 3–8 μm, undifferentiated hyphae, branching, colorless, thin-walled. Stipe trama longitudinally acrophysalidic; filamentous, undifferentiated hyphae 3–11 μm wide, thin-walled, frequently branching; acrophysalides up to 100–320 × 20–30 μm, thin-walled; vascular hyphae rare. Partial veil filamentous hyphae 3–6 μm wide, thick-walled, branching; abundant inflated cells with terminal single or 2–3 in chain, clavate to broadly clavate occasionally subglobose to broadly ovoid, 10–38 ×10–22 μm, colorless, hyaline, thin-walled; vascular hyphae rare.
Habitat: solitary on the ground in deciduous Dipterocarpaceae forest to hill Fagaceae forest.
Specimens examined: Thailand, Chiang Mai Province, Doi Saket District, 24 km marker on highway number 118 to Chiang Rai Province, N18°54'28''- E99°12'42'' elev. 510 m, 13 June 2013, B. Thongbai BZ201341 (MFLU 14–0054, BR 5020187252561); Chiang Mai Province, Mae On District, Tapa Village, N19°8'11.5''- E98°45'38'' elev. 950 m, 26 July 2014, Olivier Raspé OR1044 (SDBR-CMU OR1044, BR 5020187253599).
Known distribution: Subtropical regions of Central and Southern China [6] and now northern Thailand.
Remarks: The large-sized basidiomata of A. fuligineoides with a grayish brown to fuliginous umber pileus, persistent apical to subapical partial veil, and a subclavate to napiform blub with a firm limbate universal veil are characteristic of this species. Amanita fuligineoides was originally described from forests dominated by Fagaceae in China at elevations of 900–1,200 m. [12]. The Thai collections were found in a mixed Dipterocarpaceae-Fagaceae forest at elevations of 510–950 m, and agree with salient features reported in the protologue, especially with respect to the rather large basidiomata and the presence of globose to subglobose spores. The gray-brown to dark gray pileus of A. fuligineoides also occurs in A. fuliginea, A. griseorosea, and A. subfuliginea [6]. Amanita fuliginea was originally described from Japan but is widely distributed in China and Thailand [3, 4, 32]. Amanita fuliginea and A. fuligineoides are very similar in morphological features. However, A. fuliginea differs from the Thai collections by having smaller-sized basidiomata and a subglobose bulb. The molecular analysis indicates that they are not closely related. A previous study reported α-amanitin and phalloidin from both A. fuliginea and A. fuligineoides [15] which is in agreement with the toxins detected in the Thai collections of A. fuligineoides. Amanita griseorosea and A. subfuliginea have significantly smaller basidomata. Amanita fuligineoides, despite the similar morphological similarities was not closely related in the molecular analysis to either A. griseorosea or A. subfuliginea.
Toxins
HPLC analysis of the α-amanitin standard showed a mass peak [M+H+H2O]+ of 919.41 amu in the positive ESI mode and [M+H-H2O]- of 917.41 amu in the negative ESI mode, characteristic UV/Vis with an absorption maximum at 304 nm, and a retention time (Rt) at 3.3–3.4 mins (Fig 6). The palloidin standard showed a mass peak [M+H+H2O]+ of 789.40 amu in the positive ESI mode, and [M+H-H2O]- of 787.39 amu in the negative ESI mode, characteristic UV/Vis with an absorbed maximum at 290 nm, and a retention time (Rt) at 5.1–5.2 mins (Fig 7). Crude extracts of Thai Amanita taxa were compared with these standards which showed major peaks at the Rt of the standards with matching mass spectra in negative ESI mode, as well as their characteristic UV/Vis. Neither α-amanitin or phalloidin were observed in A. ballerina (Fig 8A). Several peaks corresponding to amatoxins were detected in the extracts of A. brunneitoxicaria (Fig 8B) and A. fuligineoides (Fig 8C). However, quantification was only accomplished for α-amanitin and phalloidin for which standards were available. In A. fuligineoides, 6.7 mg α-amanitin per gram of dry weight and 1 mg of phalloidin per gram of dry weight were detected. Amanita brunneitoxicaria contained approximately 21.5 mg of α-amanitin per gram of dry weight. A. brunneitoxicaria contained only traces of α-amanitin and no phalloidin was present. Extensive evaluation of the HPLC-MS results tentatively revealed the presence of additional minor peaks that may correspond with other amatoxins. Cycloamanide C (Rt 5.7 min; molecular weight 886 Da; Gauhe and Wieland [33]), phallisin (Rt 4.3 min; molecular weight 804 Da [34]) and phalloin (Rt 5.9; molecular weight 772 Da [35]) were detected in A. fuligineoides, whereas A. brunneitoxicaria yielded only cycloamanide C. These results are based on the mass spectrometric data in comparison with characteristics of the amatoxins reported in the literature and would have to be confirmed by preparative isolation of the compounds, which would afford the availability of large quantities. In any case, the present study only proves the presence of the hazardous toxins in the new species A. brunneitoxicaria and additional analyses would have to be carried out on additional collections of the respective species in order to ascertain their toxicogenic potential.
(A) The peak of α-amanitin detected on the chromatogram at absorption from 200–304 nm. (B) Signal UV chromatogram of α-amanitin detected at 3.3–3.4 mins. (C) Molecular weight of 919.41 in the positive ESI mode. (D) Molecular weight of 917.41 in the negative ESI mode.
(A) The peak of phalloidin detected on the chromatogram at UV absorption from 222–290 nm. (B) Signal UV spectrum of phalloidin detected at 5.1–5.2 mins. (C) Molecular weight of 789.40 in the positive ESI mode. (D) Molecular weight of 787.39 in the negative ESI mode.
(A) Chromatogram of the crude extract of A. ballerina showing non-detection of α-amanitin and phalloidin. (B) Chromatogram of the crude extract of A. brunneitoxicaria showing detection of α-amanitin and no detectable phalloidin. (C) Chromatogram of the crude extract of A. fuligineoides showing detection of both α-amanitin and phalloidin.
Discussion
This study, along with other recent publications [16, 36], illustrates the high diversity of Amanita species in Thailand, suggesting that more taxa remain to be discovered and documented. First, Amanita ballerina is a new species in an interesting clade that so far contained only a few species. Second, A. brunneitoxicaria clusters with A. fuligineoides, which in a previous publication was the only taxon in the lethal amanitas clade VIII [13]. Third, Amanita brunneitoxicaria is the first new Amanita species to be discovered in southern Thailand. To date, most of the taxonomic research on Amanita in Thailand has been focused on northern Thailand and the discovery of A. brunneitoxicaria suggests that additional study is needed in other parts of the country with different mycorrhizal hosts and ecology. Additional collections of A. zangii [16] were made during this investigation in Chiang Mai province in hill forest associated with Castanopsis spp. and Quercus spp. or Lithocarpus spp. at elevations of 1450 m, suggesting that A. zangii (Fig 1E) is not a rare species in northern Thailand.
So far, studies of Amanita have devoted much attention to species producing toxins, but molecular studies of Amanita toxin genes have been only recently conducted [8–10]. Research has begun to examine the toxins as well as phylogenies and evolutionary relationships among toxin-encoding genes [13, 15, 37, 42]. Here, we report on an initial investigation of the presence of toxins in two species of Amanita sect. Phalloideae and one species, A. ballerina, whose taxonomic placement is uncertain, all collected in Thailand. Screening for both α-amanitin and phalloidin showed that neither toxin was present in A. ballerina, as is also the case for A. sp. HKAS77321 and A. zangii [13]. The possibility of the presence but lack of expression of toxin-encoding genes in those species should be explored.
The position of A. zangii and of stirps Hesleri to which it is morphologically related has been previously discussed [13, 16, 23]. Previous molecular analyses showed that A. zangii and A. sp. HKAS77321 formed a moderately supported clade sister to a clade comprised of lethal amanitas (Amanita sect. Phalloideae sensu Bas [1]), and the former was interpreted as an early diverging lineage in the Phalloideae [13, 16]. In the present four-gene phylogenetic analysis, A. ballerina is a third taxon belonging to that interesting clade. It should be noted, however, that this clade was not supported in the two protein-coding gene analysis (BS = 38% only). In both the two-gene and four-gene analyses in the present study, Amanita ballerina and A. sp. HKAS77321 formed a strongly supported clade sister to A. zangii. Similarly to A. zangii, the suite of morphological characters in A. ballerina is somewhat in conflict with its placement in the Phalloideae. They are indeed reminiscent of A. limbatula, a rare species known from only a few collections, currently included in stirps Limbatula of sect. Lepidella [7]. A significant difference between A. ballerina and species of stirps Limbatula, however, is the presence of clamp connections in the latter [1]. Unfortunately, no sequence of A. limbatula is available to confirm the phylogenetic affinities of this species, and no specimen in good condition was available to us. Amanita ballerina shares a similar elongate to ventricose bulb morphology and pileipellis structure with A. zangii. A. ballerina has a striate margin when mature, while A. zangii has an appendiculate margin. Neither of these characters conform to the circumscription of sect. Phalloideae sensu Bas [1], which raises questions about placement of these two taxa. The sequence of A. sp. HKAS77321 also falls into the interesting clade with A. ballerina and A. zangii, but unfortunately no morphological information is available for this taxon. There is thus growing evidence that there is a divergent lineage sister to lethal amanitas, which could be interpreted as an early diverging lineage in sect. Phalloideae, or perhaps as a completely new section. Careful morphological and sequence analyses of members of stirps Hesleri and stirps Limbatula is required. Further exploration of Amanita diversity and historical biogeography in South-East Asia and Australia, which seems to be a hotspot of early diverging Amanita lineages. [13,14], is critical and could reveal more members of this clade, and help elucidate morphological and molecular synapomorphies to support or refute the hypothesis of a new section.
Supporting information
S1 Fig. Phylogenetic tree inferred by Maximum Likelihood analysis of β-tubulin sequences.
Bootstrap values (BS) ≥70% are shown above the branches. Amanita species with sequences generated in this study are highlighted in bold. Voucher collection identifiers are provided after each species name.
https://doi.org/10.1371/journal.pone.0182131.s001
(EMF)
S2 Fig. Phylogenetic tree inferred by Maximum Likelihood analysis of rpb2 sequences.
Bootstrap values (BS) ≥70% are shown above the branches. Amanita species with sequences generated in this study are highlighted in bold. Voucher collection identifiers are provided after each species name.
https://doi.org/10.1371/journal.pone.0182131.s002
(EMF)
S3 Fig. Phylogenetic tree inferred by Maximum Likelihood analysis of ITS1+5.8S+ITS2 sequences.
Bootstrap values (BS) ≥70% are shown above the branches. Amanita species with sequences generated in this study are highlighted in bold. Voucher collection identifiers are provided after each species name.
https://doi.org/10.1371/journal.pone.0182131.s003
(EMF)
Acknowledgments
The help of Dr. Shaun Pennycook, Wim Baert and Alexia Semeraro is greatly appreciated. Our warmest thanks go to Simone Heitkämper, Wilawan Kuephadungphan, and Patima Phainuphong for their kind help in analysing toxins. OR is grateful to the National Research Council of Thailand for permission to conduct research in Thailand. SL and OR acknowledge the National Parks authorities for granting the permit for collecting in Doi Suthep-Pui National Park.
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