Peer Review History
| Original SubmissionFebruary 4, 2026 |
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Dear Dr. Khan, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by May 17 2026 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. As the corresponding author, your ORCID iD is verified in the submission system and will appear in the published article. PLOS supports the use of ORCID, and we encourage all coauthors to register for an ORCID iD and use it as well. Please encourage your coauthors to verify their ORCID iD within the submission system before final acceptance, as unverified ORCID iDs will not appear in the published article. Only the individual author can complete the verification step; PLOS staff cannot verify ORCID iDs on behalf of authors. We look forward to receiving your revised manuscript. Kind regards, Lubna Shirin, Ph.D, M.Phil, MBBS Academic Editor PLOS One Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1.Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please include a complete copy of PLOS’ questionnaire on inclusivity in global research in your revised manuscript. Our policy for research in this area aims to improve transparency in the reporting of research performed outside of researchers’ own country or community. The policy applies to researchers who have travelled to a different country to conduct research, research with Indigenous populations or their lands, and research on cultural artefacts. The questionnaire can also be requested at the journal’s discretion for any other submissions, even if these conditions are not met. Please find more information on the policy and a link to download a blank copy of the questionnaire here: https://journals.plos.org/plosone/s/best-practices-in-research-reporting. Please upload a completed version of your questionnaire as Supporting Information when you resubmit your manuscript. 3. We note that your Data Availability Statement is currently as follows: “All relevant data are within the manuscript and its Supporting Information files.” Please confirm at this time whether or not your submission contains all raw data required to replicate the results of your study. Authors must share the “minimal data set” for their submission. PLOS defines the minimal data set to consist of the data required to replicate all study findings reported in the article, as well as related metadata and methods (https://journals.plos.org/plosone/s/data-availability#loc-minimal-data-set-definition). For example, authors should submit the following data: - The values behind the means, standard deviations and other measures reported; - The values used to build graphs; - The points extracted from images for analysis. Authors do not need to submit their entire data set if only a portion of the data was used in the reported study. If your submission does not contain these data, please either upload them as Supporting Information files or deposit them to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of recommended repositories, please see https://journals.plos.org/plosone/s/recommended-repositories. If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially sensitive information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. If data are owned by a third party, please indicate how others may request data access. 4. We notice that your supplementary figures are uploaded with the file type 'Figure'. Please amend the file type to 'Supporting Information'. Please ensure that each Supporting Information file has a legend listed in the manuscript after the references list. 5. Your ethics statement should only appear in the Methods section of your manuscript. If your ethics statement is written in any section besides the Methods, please move it to the Methods section and delete it from any other section. Please ensure that your ethics statement is included in your manuscript, as the ethics statement entered into the online submission form will not be published alongside your manuscript. 6. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. [Note: HTML markup is below. Please do not edit.] Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: No Reviewer #2: No ********** 2. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: No Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: Yes ********** Reviewer #1: This manuscript addresses an important and clinically relevant topic: the psychological burden and quality of life among patients with ulcerative colitis in a low- and middle-income setting. The integration of disease severity (Mayo score), disease extent (Montreal classification), and validated psychological instruments (HADS, BDI-II, IBDQ-32) is commendable and adds multidimensional value to the study. However, several methodological and reporting issues need clarification before the manuscript can be considered technically sound. First, there are inconsistencies in the reported data that require careful reconciliation. The distribution of disease extent (E1, E2, E3) reported in the Results section differs from that presented in Table 2. These values should be cross-checked and corrected to ensure internal consistency throughout the manuscript. Second, the graphical presentation of the Mayo score components (Figure 1) does not appear to sum to the total sample size (n = 101). For example, the counts shown for stool frequency and other components are lower than expected. It is unclear whether this reflects missing data, a subgroup analysis, or a graphical error. The authors should clarify whether any observations were excluded from these analyses and explicitly report missing values if present. Third, in Figure 2 (correlation heatmap), p-values are displayed for self-correlations (ρ = 1.00). Since correlation of a variable with itself is structurally 1.00 and does not require hypothesis testing, reporting p-values in these diagonal cells is not statistically appropriate. Additionally, p-values reported in the heatmap should be checked for consistency with those presented in Table 4. Fourth, the reported mean scores for HADS-A, HADS-D, and BDI-II appear unusually low relative to the proportion of participants categorized as borderline or abnormal. The authors should verify that the mean values correspond to the full scale ranges (HADS 0–21 per subscale; BDI-II 0–63) and confirm that no transformation or rescaling was applied. If any scoring modification was used, this must be clearly described in the Methods section. Fifth, regarding the multivariable regression analysis, several closely related psychological measures (HADS-D and BDI-II) were included simultaneously. The authors should clarify whether multicollinearity diagnostics (e.g., VIF) were assessed and report model assumption checks (normality of residuals, homoscedasticity) to support the validity of the linear model. In addition, the Data Availability statement should be harmonized. The manuscript text indicates that further inquiries can be directed to the corresponding author, whereas the submission form states that all relevant data are included in the manuscript and Supporting Information files. These statements should be aligned to comply fully with journal data policy. Finally, while the discussion appropriately acknowledges limitations such as the cross-sectional design and single-center sampling, some interpretations should remain strictly associative rather than suggest directional implications. Overall, the study addresses an important gap and has the potential to contribute meaningful data from an underrepresented population. However, the issues outlined above—particularly those related to data consistency and statistical reporting—should be carefully addressed to ensure methodological transparency and reproducibility. Reviewer #2: The use of convenience sampling in this study represents a major methodological limitation that directly impacts the validity of the inferential statistical analyses performed. While the authors employed ANOVA, t-tests, and regression analyses, these methods assume that the sample is drawn from a probability-based population, which is not the case here. As a result, the reported p-values and statistical significance cannot be interpreted as evidence of population-level effects.While the topic is important and the dataset has potential value, the current analytical framework is fundamentally incompatible with the sampling design, rendering the conclusions unreliable.Therefore, I recommend rejection in its current form. ********** what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: No Reviewer #2: Yes: M Tanveer Hossain Parash ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] To ensure your figures meet our technical requirements, please review our figure guidelines: https://journals.plos.org/plosone/s/figures You may also use PLOS’s free figure tool, NAAS, to help you prepare publication quality figures: https://journals.plos.org/plosone/s/figures#loc-tools-for-figure-preparation. NAAS will assess whether your figures meet our technical requirements by comparing each figure against our figure specifications. |
| Revision 1 |
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Dear Dr. Khan, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Aug 29 2026 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. As the corresponding author, your ORCID iD is verified in the submission system and will appear in the published article. PLOS supports the use of ORCID, and we encourage all coauthors to register for an ORCID iD and use it as well. Please encourage your coauthors to verify their ORCID iD within the submission system before final acceptance, as unverified ORCID iDs will not appear in the published article. Only the individual author can complete the verification step; PLOS staff cannot verify ORCID iDs on behalf of authors. We look forward to receiving your revised manuscript. Kind regards, Lubna Shirin, Ph.D, M.Phil, MBBS Academic Editor PLOS One Journal Requirements: If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. Additional Editor Comments: Dear Dr. Amjad Khan, Assalamualikum. Kindly do your correction according to the reviewer comment and submit it again. Kind Regards, Dr. Lubna [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author Reviewer #1: All comments have been addressed Reviewer #3: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions??> Reviewer #1: Yes Reviewer #3: Partly ********** 3. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #3: No ********** Reviewer #1: Thank you for addressing the comments raised during the previous review round. The revised manuscript has improved substantially, and most of the methodological and reporting concerns have been adequately addressed. I have only one minor point for clarification. The reported mean values for HADS-A, HADS-D, and BDI-II appear to represent categorized scores rather than the original questionnaire scores. To avoid potential confusion for readers, please clarify this explicitly in the Methods and Results sections and indicate whether these values reflect category coding or raw scale scores. With this minor clarification, I believe the manuscript is suitable for publication. Reviewer #3: Dear Authors, I. Title: The term “impact” may imply a causal relationship between ulcerative colitis and the assessed outcomes. However, given the cross-sectional design of the study, causality cannot be established, as exposure and outcomes are assessed simultaneously. Therefore, from a methodological perspective, a title referring to an "association" or "relationship" rather than an "impact" would be more appropriate. For example: Mental Health and Quality of Life Among Patients with Ulcerative Colitis: A Cross-Sectional Study in a Pakistani Cohort or Association Between Ulcerative Colitis, Mental Health, and Quality of Life in a Pakistani Cohort or Assessment of Mental Health and Quality of Life in Patients with Ulcerative Colitis: A Cross-Sectional Analysis II. Introduction: Line:117-118 The sentence "In Pakistan, the prevalence of UC appears to be increasing (9), likely due to lifestyle changes, urbanization, dietary shifts, and better diagnostic capacities. " is somewhat misleading, as diagnostic capacity affects disease detection and the estimation of prevalence rather than necessarily contributing to a true increase in disease occurrence. In this case, it would be more appropriate to replace the sentence with the following: "In Pakistan, the prevalence of UC appears to be increasing (9), potentially as a result of lifestyle changes, urbanization, and dietary transitions. In addition, advances in diagnostic capabilities may have improved case detection, thereby enhancing the accuracy of prevalence estimates" III. Methodology: 1. I understand that the study population consisted of Punjabi participants, as the authors state that the questionnaires were translated into Urdu. This information should be clearly specified in the Materials section. 2. Consider simplifying the description accompanying Table 1. to improve clarity and readability. 3. The authors should also specify the version of the Declaration of Helsinki referenced (e.g., the Declaration of Helsinki, 1975, revised in 2000). 4. Additionally, demographic information on the participants’ age is lacking and should be included. 5. The manuscript does not clearly indicate whether the patients with UC had any additional chronic diseases or comorbid conditions. 6. The manuscript lacks information on the therapies received by the patients enrolled in the study, which may be relevant for the interpretation of the results. 7. The methodology section requires linguistic revision and simplification to enhance readability and comprehension. IV. Disscusion: 1. The first paragraph of the Discussion would benefit from revision and condensation. In addition, the core of the Discussion should provide a more in-depth discussion of the results in the context of the existing literature, particularly studies conducted by other authors addressing the same research topic, eg. doi: 10.1159/000538618; doi: 10.1159/000528788; doi: 10.1097/PG9.0000000000000287) Major issue: 2. A major limitation that undermines the reliability of the conclusions is the small sample size, particularly given that all participants were recruited from a single center. This substantially limits the generalizability of the findings and does not allow for drawing conclusions applicable to the entire Pakistani population. The authors should acknowledge this limitation more explicitly and interpret their results with greater caution. 3. In addition, I suggest revising and shortening the first paragraph of the Discussion section. The main body of the Discussion should be expanded to provide a more comprehensive comparison of the findings with those reported by other authors investigating this topic. Minor issue: 1) It is generally recommended to avoid starting sentences with abbreviations. 2) There are several inconsistencies in the formatting of the reference list that should be corrected to ensure compliance with the journal's guidelines. 3) A thorough language revision is recommended to improve clarity, readability, and grammatical accuracy. 4) The term “race” should preferably be replaced with “ethnic origin” (or “ethnicity”), as it is more appropriate and precise in this context. Summary: The study addresses an important and clinically relevant topic; however, several issues should be addressed before the manuscript can be considered for publication. In particular, the authors should provide additional information regarding patient characteristics (including comorbidities, treatment regimens, and ethnic background), and strengthen the Discussion section by placing their findings in a broader context of the existing literature. Addressing these points would improve the clarity, scientific rigor, and overall impact of the manuscript. ********** what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: No Reviewer #3: Yes: Grażyna Adler ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] To ensure your figures meet our technical requirements, please review our figure guidelines: https://journals.plos.org/plosone/s/figures You may also use PLOS’s free figure tool, NAAS, to help you prepare publication quality figures: https://journals.plos.org/plosone/s/figures#loc-tools-for-figure-preparation. NAAS will assess whether your figures meet our technical requirements by comparing each figure against our figure specifications. |
| Revision 2 |
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Association Between Ulcerative Colitis, Mental Health, and Quality of Life in a Pakistani Cohort: A Cross-Sectional Analysis PONE-D-26-05459R2 Dear Dr. Amjad, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Lubna Shirin, Ph.D, M.Phil, MBBS Academic Editor PLOS One Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-26-05459R2 PLOS One Dear Dr. Khan, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS One. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS One and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Lubna Shirin Academic Editor PLOS One |
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