Peer Review History
| Original SubmissionApril 14, 2026 |
|---|
|
Dear Dr. Scarpelli, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jun 29 2026 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. As the corresponding author, your ORCID iD is verified in the submission system and will appear in the published article. PLOS supports the use of ORCID, and we encourage all coauthors to register for an ORCID iD and use it as well. Please encourage your coauthors to verify their ORCID iD within the submission system before final acceptance, as unverified ORCID iDs will not appear in the published article. Only the individual author can complete the verification step; PLOS staff cannot verify ORCID iDs on behalf of authors. We look forward to receiving your revised manuscript. Kind regards, Amitava Mukherjee, ME, Ph.D. Academic Editor PLOS One Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. Please note that PLOS One has specific guidelines on code sharing for submissions in which author-generated code underpins the findings in the manuscript. In these cases, we expect all author-generated code to be made available without restrictions upon publication of the work. Please review our guidelines at https://journals.plos.org/plosone/s/materials-and-software-sharing#loc-sharing-code and ensure that your code is shared in a way that follows best practice and facilitates reproducibility and reuse. 3. Please include your full ethics statement in the ‘Methods’ section of your manuscript file. In your statement, please include the full name of the IRB or ethics committee who approved or waived your study, as well as whether or not you obtained informed written or verbal consent. If consent was waived for your study, please include this information in your statement as well. 4. In the online submission form, you indicated that data are available upon request to the corresponding author. All PLOS journals now require all data underlying the findings described in their manuscript to be freely available to other researchers, either 1. In a public repository, 2. Within the manuscript itself, or 3. Uploaded as supplementary information. This policy applies to all data except where public deposition would breach compliance with the protocol approved by your research ethics board. If your data cannot be made publicly available for ethical or legal reasons (e.g., public availability would compromise patient privacy), please explain your reasons on resubmission and your exemption request will be escalated for approval. 5. We note that the grant information you provided in the ‘Funding Information’ and ‘Financial Disclosure’ sections do not match. When you resubmit, please ensure that you provide the correct grant numbers for the awards you received for your study in the ‘Funding Information’ section. 6. Thank you for stating the following financial disclosure: This work was supported by the National Institutes of Health (NIH/NINDS R01 NS131160 and NIH/NCI P30 CA023168). Please state what role the funders took in the study. If the funders had no role, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." If this statement is not correct you must amend it as needed. Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf. 7. Thank you for stating the following in the Acknowledgments Section of your manuscript: The authors acknowledge the use of the Chemical Genomics Facility and the Small Animal MRI Facility, both of which are core facilities of the NIH-funded Indiana Clinical and Translational Sciences Institute. These cores are administered by the Purdue Institute for Drug Discovery and the Weldon School of Biomedical Engineering, respectively. ICP-MS samples were prepared and run by the Research Instrumentation Center in the Department of Chemistry at Purdue University. Murine intracranial injections were completed in partnership with the Biological Evaluation Shared Resource Facility under the Purdue Institute for Cancer Research, supported by P30 CA023168. We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: This work was supported by the National Institutes of Health (NIH/NINDS R01 NS131160 and NIH/NCI P30 CA023168). Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 8. We note that Figure(s) 1, 3 in your submission contain copyrighted images. All PLOS content is published under the Creative Commons Attribution License (CC BY 4.0), which means that the manuscript, images, and Supporting Information files will be freely available online, and any third party is permitted to access, download, copy, distribute, and use these materials in any way, even commercially, with proper attribution. For more information, see our copyright guidelines: http://journals.plos.org/plosone/s/licenses-and-copyright. We require you to either (1) present written permission from the copyright holder to publish these figures specifically under the CC BY 4.0 license, or (2) remove the figures from your submission: a. You may seek permission from the original copyright holder of Figure(s) 1, 3 to publish the content specifically under the CC BY 4.0 license. We recommend that you contact the original copyright holder with the Content Permission Form (http://journals.plos.org/plosone/s/file?id=7c09/content-permission-form.pdf) and the following text: “I request permission for the open-access journal PLOS ONE to publish XXX under the Creative Commons Attribution License (CCAL) CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). Please be aware that this license allows unrestricted use and distribution, even commercially, by third parties. Please reply and provide explicit written permission to publish XXX under a CC BY license and complete the attached form.” Please upload the completed Content Permission Form or other proof of granted permissions as an "Other" file with your submission. In the figure caption of the copyrighted figure, please include the following text: “Reprinted from [ref] under a CC BY license, with permission from [name of publisher], original copyright [original copyright year].” b. If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only. 9. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Partly Reviewer #2: Yes Reviewer #3: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: N/A Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** Reviewer #1: In this manuscript, the authors have focused on analyzing multiple methods for quantifying iron oxide nanoparticles across in vivo, ex vivo, and in vitro models of glioma or glioblastoma. The topic is timely and relevant; however, some points need to be reviewed. After reading the introduction, the rationale for administering ferumoxytol in the different models remains unclear. The authors mention that this drug is administered as an MRI contrast agent. What is the incidence of this drug's use as a contrast agent in clinical practice? What is the significance of detecting elevated iron levels induced by ferumoxytol when iron levels in the brain are actually very low? If I understand correctly, the nanoparticle is primarily a tool for validating and standardizing iron quantification. If so, please specify this clearly in the text. The dosing scheme (up to 300 mg/kg/day × 21 injections) is extremely high relative to clinical use of ferumoxytol. What is the biological relevance to human imaging or iron physiology? Therefore, it is recommended to clearly justify the selection of doses and, based on that, discuss the clinical translation of the results. The authors mention that a descending trend was also observed in mice receiving 0 mg/kg ferumoxytol. This appears to be critical because it suggests that changes in T2 are not specific to iron accumulation. What factors in tumor progression might be influencing this signal? Histological validation would be valuable to elucidate this result. What is the probability that in vivo analysis with the Portable XRF is dependent on the position of the beam and the rodent's head? Is it likely that iron will accumulate in the hair and scalp after ferumoxytol administration? If so, then the Portable XRF measurements would have a significant bias because they would be accounting for extra-cerebral iron content. Please specify the DV coordinate of cell implantation in the brain because Figure 2A shows a high variability in the tumor growth zone. The decision to administer radiotherapy to animals without clinical signs or imaging evidence of a tumor is confusing. Was the engraftment rate 100% in irradiated animals? What was the mean tumor size at the time of treatment? Have the authors used MRI to assess tumor growth kinetics and confirm tumor presence six days post-engraftment? Reviewer #2: The manuscript by Veenstrata et al., reads clearly, coherently and with a strong scientific narrative except for the discussion section. The following issues should be addressed before it can be suitable for publication in PLOS One. Considering biological complexity vs. calibration standards, the phantoms used for method validation do not fully replicate the biological complexity and inhomogeneity of real tissue, which can affect the accuracy and applicability of limit of detection calculations and linearity assessments in vivo. Can you please elaborate on this and provide some justifications? The study was conducted in a murine glioblastoma model, which, while relevant, may not fully represent human brain tumors or other clinical scenarios. The number of biological replicates per group was relatively small (often 2–4), which may limit statistical power. Similarly, some methods, such as portable XRF, may not be directly translatable to human brain studies due to anatomical differences. Can you please add a paragraph with respect to translation of the results to clinical setting? With respect to the limitations in methodologies, a more in-depth discussion is required. For instance the upper limit of detection in MRI T2* mapping is limited at high iron concentrations. Doses above 100 mg/kg/day of ferumoxytol caused significant image distortion and signal dropout, making quantification unreliable at these levels. As such, influence of non-iron factors should be elaborated in more details. The following statement is too optimistic, especially clinical part, please revise “This lends to the significance and impact of this work as these findings have implications in basic, preclinical, and clinical research investigating the impacts of iron concentrations on diverse aspects of human health and disease” Reviewer #3: 1) It is strongly recommended that the authors compare their MRI data analysis approach with related publications, such as Roudi et al., 2024 in osteosarcoma. 2) It has been shown that Fe is actively phagocytosed by macrophages; however, no data are provided regarding these cell populations. 3) What is the rationale behind selecting T2* rather than T2? ********** what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: No Reviewer #2: No Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] To ensure your figures meet our technical requirements, please review our figure guidelines: https://journals.plos.org/plosone/s/figures You may also use PLOS’s free figure tool, NAAS, to help you prepare publication quality figures: https://journals.plos.org/plosone/s/figures#loc-tools-for-figure-preparation. NAAS will assess whether your figures meet our technical requirements by comparing each figure against our figure specifications. |
| Revision 1 |
|
Comparison of methods for in vivo and ex vivo quantification of iron in murine brain tumors PONE-D-26-14543R1 Dear Dr. Scarpelli, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Amitava Mukherjee, ME, Ph.D. Academic Editor PLOS One Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed Reviewer #3: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions??> Reviewer #1: Yes Reviewer #2: Partly Reviewer #3: (No Response) ********** 3. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: (No Response) ********** 4. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: (No Response) ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: (No Response) ********** Reviewer #1: The authors have satisfactorily addressed all observations. The revised manuscript has been considerably improved and can therefore be published in its current form. Reviewer #2: All the raised comments have been addressed by the authors. However, the high doses of the drug remains as a limitation with respect to translation of the data to the clinical setting Reviewer #3: The authors addressed the comments and I have no further comments. The manuscript can be published in the current format. ********** what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: No Reviewer #2: No Reviewer #3: No ********** |
| Formally Accepted |
|
PONE-D-26-14543R1 PLOS One Dear Dr. Scarpelli, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS One. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Professor Dr. Amitava Mukherjee Academic Editor PLOS One |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .