Peer Review History
| Original SubmissionJuly 17, 2025 |
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-->PONE-D-25-38915-->-->Multidrug Resistance and Inappropriate Empiric Therapy as Predictors of Hospital Stay in Diabetic Foot Infections-->-->PLOS ONE Dear Dr. Itani, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Oct 16 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:-->
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Muhammad Atif Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions -->Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. --> Reviewer #1: No Reviewer #2: Yes ********** -->2. Has the statistical analysis been performed appropriately and rigorously? --> Reviewer #1: No Reviewer #2: Yes ********** -->3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.--> Reviewer #1: Yes Reviewer #2: Yes ********** -->4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.--> Reviewer #1: No Reviewer #2: Yes ********** -->5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)--> Reviewer #1: The manuscript addresses an important and clinically relevant question. However, it has substantial methodological and reporting deficiencies that compromise data integrity, clarity, and policy compliance. Key problems include inconsistencies in reported results, unclear definitions, insufficient statistical rigor, and inadequate discussion of limitations. I recommend major revision (bordering on rejection unless the authors can perform substantial re-analysis and fully reconcile inconsistencies). Without these changes, the study’s validity and interpretability remain doubtful. Reviewer #2: Overall Recommendation: Major Revisions Overall Impression: This manuscript presents a valuable retrospective analysis of diabetic foot infections (DFIs) at a tertiary care center in Jordan. The manuscript is generally well-structured. However, major concerns regarding potential selection bias, data analysis, and the interpretation of results must be addressed before the manuscript can be considered for publication. Detailed Comments: 1. The exclusion of 79.6% of screened cases (911/1145) of screened cases creates significant selection bias, likely over-representing complex infections. Therefore, the pathogen prevalence and MDR rates cannot be considered representative of the center's true DFI population and must be highlighted as a major limitation. 2. The claim that inappropriate empiric therapy independently prolongs hospital stay is not supported by the current analysis. The analysis must account for confounding by infection severity and other clinical factors. A multivariate model is essential to establish this relationship. 3. There are discrepancies between the Abstract and the main Results section (3.4) that must be reconciled for the manuscript to be accurate and credible. a. Abstract: S. aureus = 88 (37.6%); Results: Staphylococcus species = 117 (50%). Please clarify the breakdown between S. aureus (MSSA+MRSA) and other Staphylococci. b. Abstract: P. aeruginosa = 40 (17.1%); Results: P. aeruginosa = 32 (13.7%). c. Abstract: E. coli = 35 (15.0%); Results: E. coli = 33 (14.1%). Please carefully review and ensure all data points are consistent throughout the 4. The flowchart (Figure 2) is currently confusing and difficult to follow. The numbers in the boxes (e.g., "29 received appropriate...") do not match the totals in the text. This figure should be redesigned for clarity to accurately visually represent the patient flow from screening through the assessment of empiric and definitive therapy. 5. Please define "concurrent infections" in the exclusion criteria. What types of infections were excluded (e.g., pneumonia, UTI)? ********** -->6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.--> Reviewer #1: Yes: Fahad Saleem Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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-->PONE-D-25-38915R1-->-->Multidrug Resistance and Inappropriate Empiric Therapy as Predictors of Hospital Stay in Diabetic Foot Infections-->-->PLOS One Dear Dr. Itani, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Apr 24 2026 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:-->
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Shiv Kumar Sah, Master Academic Editor PLOS One Journal Requirements: 1. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions -->Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.--> Reviewer #3: All comments have been addressed Reviewer #4: All comments have been addressed ********** -->2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. --> Reviewer #3: Yes Reviewer #4: Yes ********** -->3. Has the statistical analysis been performed appropriately and rigorously? --> Reviewer #3: N/A Reviewer #4: Yes ********** -->4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.--> Reviewer #3: No Reviewer #4: No ********** -->5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.--> Reviewer #3: Yes Reviewer #4: Yes ********** -->6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)--> Reviewer #3: Dear author (s) I have some revision suggestions below for your manuscript. The main concern relates to the clarity and consistency of the definitions used in the study—especially the criteria for "appropriate" empiric therapy. The manuscript states that therapy was considered appropriate if at least one antibiotic administered in the first 48 hours covered all isolated pathogens with correct dose, route, and formulation. However, this definition lacks operational detail. It remains unclear how treatment adequacy was judged in polymicrobial infections, how dosing appropriateness was evaluated, and what specific criteria led to classifying 49 cases as “insufficient data.” A more explicit, standardized definition—ideally presented in a table—would greatly enhance reproducibility and transparency. There is also an issue with the MDR definition. Although the manuscript uses a definition based on resistance to at least one agent in three or more antimicrobial classes, the cited reference does not correspond to the widely accepted Magiorakos et al. (2012, Clinical Microbiology and Infection) framework. This internationally recognized definition should be used and appropriately referenced. The statistical analysis is descriptive and univariate, relying primarily on Mann–Whitney U tests. Length of stay is influenced by multiple potential confounders, including age, infection severity, comorbidities, presence of osteomyelitis, ICU admission, and number of pathogens isolated. Without a multivariable regression model, the conclusion that inappropriate empiric therapy prolongs hospitalization remains incomplete. A regression approach—linear, Poisson, or negative binomial, depending on LOS distribution—would substantially strengthen the findings. The flow diagram presented in the manuscript is somewhat confusing. Excluded cases are described narratively but are not shown visually. The diagram would benefit from a clearer PRISMA-style structure detailing screened cases, exclusions with reasons, and final analytic cohorts. The discussion section provides an overview of relevant literature but would benefit from deeper engagement with the study’s own findings. In particular, the lack of a statistically significant association between MDR infections and length of stay warrants a more nuanced explanation. The sustained use of broad-spectrum therapy despite availability of culture results is important and could be explored more thoroughly in terms of stewardship implications, local prescribing culture, and institutional factors. Several tables and figures require clearer formatting, more descriptive legends, and more precise labeling. Some variables in Tables 1 and 2 are presented in ways that may confuse readers, and percentages sometimes do not sum intuitively. Presenting the transitions between empiric and definitive therapy in a table (rather than solely in the text) would also improve clarity. Minor issues include occasional repetition, slight inconsistencies in terminology, and referencing concerns. The manuscript is generally well written, but some sections—especially the introduction and discussion—could be more concise. The abstract could be shortened for clarity. Microorganism names should be written in italic. It should be corrected in all sections. Ethical considerations are adequately addressed, although the data availability statement may require refinement to fully comply with PLOS ONE expectations. It may help to clarify why anonymization alone is insufficient to meet public data-sharing requirements. In its current form, the manuscript contributes valuable descriptive epidemiology but requires substantial methodological refinement and clarification. With careful revision, including clearer definitions, improved statistical modeling, more structured data presentation, and deeper interpretation, the study would be suitable for reconsideration. Reviewer #4: The author(s) have adequately addressed the comments raised in the previous review. However, the following needs to be addressed as well: RESULTS Table 1: Comment: •Ensure open and closed brackets around the percentages under the Frequency column •Correct the proportions/percentages of the following categories: Most common illnesses – Correct the proportion for Chronic kidney failure – it is not 26%. •Was the patient transferred to ICU – Correct the proportion of ‘No’ – it is not 84.3% 3.4 Isolated Bacteria. Correct the percentage of Enteroccocus spp - 51(51.8%) to the nearest decimal point. 3.5 3.5. Empirical and Definitive Antimicrobial Therapy Correct the percentage of ‘Most antibiotics were administered intravenously (n-179; 76.5%) to the nearest decimal point. Line 265: You state ‘Following culture and susceptibility results, antibiotics were modified in several ways’. Comment: This text implies that antibiotics were modified, which is not the case. I suppose what was modified was the antibiotic therapy. Fig 2 – The flow of data is confusing after the 3rd level category. The implication is that the numbers in the box below a category are a subset of that category, which is not the case. Line 300: You state ‘#using simple linear regression’. For clarity, I suggest you state ‘Using univariable linear regression’ to mean you regressed each variable separately. Line 305: You state ‘This study explored the epidemiology, causative pathogens, resistance patterns, and treatment 306 approaches for DFI at a tertiary care center in Jordan.’. Comment: Epidemiology is a quite broad concept and appears here in the discussion without any reference to it in the title or aim of your study. Line 306-308: You state ‘A total of 234 patients participated, with 307 males representing 75.6% (n=177) and females 24.4% (n=57), emphasizing sex differences in DFI incidence and management (20)’. Comment: A difference should be supported with a p-value showing significance. Line 366: You state ‘The sample size limited statistical power for subgroup analyses, especially for MDR infections Comment: It would be desirable to show the post-hoc power of this study based on the sample size used. This comment was also raised previously. Line 378: Spelling of Klebsiella pneumoniae should be corrected ********** -->7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.--> Reviewer #3: No Reviewer #4: Yes: Professor George Nasinyama ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] To ensure your figures meet our technical requirements, please review our figure guidelines: https://journals.plos.org/plosone/s/figures You may also use PLOS’s free figure tool, NAAS, to help you prepare publication quality figures: https://journals.plos.org/plosone/s/figures#loc-tools-for-figure-preparation. NAAS will assess whether your figures meet our technical requirements by comparing each figure against our figure specifications.
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| Revision 2 |
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Multidrug Resistance and Inappropriate Empiric Therapy as Predictors of Hospital Stay in Diabetic Foot Infections PONE-D-25-38915R2 Dear Dr. Itani, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Shiv Kumar Sah, Master Academic Editor PLOS One Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-25-38915R2 PLOS One Dear Dr. Itani, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS One. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Mr Shiv Kumar Sah Academic Editor PLOS One |
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