Peer Review History
| Original SubmissionAugust 8, 2025 |
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-->PONE-D-25-43242-->-->Neither “lumpers” nor “splitters”: A global revision of Flabellinidae s.l. nudibranchs (Gastropoda: Heterobranchia: Nudibranchia)-->-->PLOS ONE Dear Dr. Ekimova, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Dec 21 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:-->
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Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.. We look forward to receiving your revised manuscript. Kind regards, Michael Schubert Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please take this opportunity to be sure you have met all of our guidelines for new species. For proper registration of a new zoological taxon, we require two specific statements to be included in your manuscript. 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This published work and the nomenclatural acts it contains have been registered in ZooBank, the online registration system for the ICZN. The ZooBank LSIDs (Life Science Identifiers) can be resolved and the associated information viewed through any standard web browser by appending the LSID to the prefix "http://zoobank.org/". The LSID for this publication is: urn:lsid:zoobank.org:pub: XXXXXXX. The electronic edition of this work was published in a journal with an ISSN, and has been archived and is available from the following digital repositories: PubMed Central, LOCKSS [author to insert any additional repositories]. All PLOS ONE articles are deposited in PubMed Central and LOCKSS. If your institute, or those of your co-authors, has its own repository, we recommend that you also deposit the published online article there and include the name in your article. 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If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions -->Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. --> Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** -->2. Has the statistical analysis been performed appropriately and rigorously? --> Reviewer #1: Yes Reviewer #2: N/A Reviewer #3: Yes ********** -->3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.--> Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** -->4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.--> Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** -->5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)--> Reviewer #1: The authors present a complex and detailed study on the systematics of the family Flabellinidae, a group whose taxonomic status has long been problematic due to both historical and recent conflicting classifications. The manuscript provides a useful and comprehensive overview of the history of classification issues in the family which serves as a solid framework for the study. The amount of data analyzed and the methodology employed are appropriate, reflecting meticulous work and considerable effort that deserves acknowledgment. The integration of phylogenetic analyses with morphological traits is a major strength of the manuscript. The paper is generally well written and logically structured. That said, the text would benefit from a light language revision to shorten some of the longer sentences and to reduce repetition, making it more concise and easier to follow. This would improve readability and enhance the impact of the results on the reader. I am attaching a PDF with some specific comments line by line. Overall, the authors demonstrate strong command of methods and background knowledge. The study represents a valuable contribution that advances our current understanding of flabellinid systematics. The high-quality figures and graphics further support the work. In addition the supplementary material is very valuable. All this is clearly the result of substantial effort, which should be recognized and valued. Reviewer #2: The research presented in the MS PONE-D-25-43242 entitled Neither “lumpers” nor “splitters”: A global revision of Flabellinidae s.l. nudibranchs (Gastropoda: Heterobranchia: Nudibranchia) by Ekimova et al., is proposing a new taxonomical scheme for Flabellinidae s.l., a group of nudibranchs overlong studied in the past but still difficult to interpret considering morphological characters and molecular markers. In the frame of the work, the old lasting discussion about the conflict between “lumpers and “splitters” is commented within the critical revision of the Flabellinidae s.l. The final result obtained is a new taxonomical scheme for Flabellinidae s.l., integrating traditional morphology and molecular DNA analyses, using four standard molecular markers. This MS is without any doubt very interesting and has been produced from a huge amount of work. The MS is worthy of publication, since it is a novel and important contribution to understanding the systematic of the Flabellinidae s.l. and well adheres to the main points requested by the policy of PONE. I strongly recommend publishing of this MS in the present form. I only suggest mentioning in Discussion also the discrepancy between the phylogenetics reconstructions obtained by the recent work of Korshunova et al. [Zoological Journal of the Linnean Society, 2025, 204(4)] versus the one presented in this MS. Reviewer #3: Review of Manuscript PONE-D-25-43242: “Neither “lumpers” nor “splitters”: A global revision of Flabellinidae s.l. nudibranchs (Gastropoda: Heterobranchia: Nudibranchia)” This manuscript by Ekimova et al revisits the systematics of Flabellinidae sensu lato to investigate former classifications in light of new data and discuss challenges in nudibranch systematics more broadly that work in this group has brought up. I find this manuscript thoughtful and thorough, with clear reasoning for nomenclatural and taxonomic decisions. Although the phylogeny is still in flux at the deeper nodes, the vast majority of named clades are supported as monophyletic. Where sufficient uncertainty exists, the authors do a good job exerting caution with regard to changing names. This paper also describes new genera and species that make sense in the context of the molecular and morphological data. My primary suggestions are minor, see below. Methods: Lines 162-163: Were further partitioning models investigated (i.e., by codon position)? It would be useful to explore these models at the very least. Results: Overall: I appreciate why the authors structured the first part of the results section by the previous classification, but it is confusing considering that some of these taxa do not exist in their proposed reclassification (see Coryphellidae). Perhaps a more explicit note that they are addressing the prior classification would be helpful. Overall: Please provide specific references to figures in the descriptions (e.g., Figure S2A) to make it easier to connect the figures to the text. Overall: Given that Figure S1 is so different, many of these genera/families should be compared with other taxa more broadly, since their affinities are still so uncertain. Line 257: Flabellina sp. is listed as Edmunsella sp. 1 in the tree as far as I can tell. Line 315: How much genetic divergence? Lines 332-435: It is confusing that these are not listed in the same order as in Figure 2. Consistency would make this section much easier to follow when looking at the figure. Line 472: In the drawing, the distal seminar receptacle does not look bilobed. It looks like there is a second one. Line 503: Have smooth rhinophores and non-pedunculate cerata been characterized as plesiomorphic states? This should either be rephrased, or some sort of ancestral state reconstruction should be done to provide some evidence for this claim. Line 528: I don’t see a distal seminal receptacle in Fig. S9A Lines 579-580: “narrow to wide triangular…” I’m assuming refers to the lateral teeth? Lines 587-589: Please provide some context for why these two species are included in Chlamylla. What morphological characters are being used to decide? This is something I noticed across other descriptions as well. Line 620: I wouldn’t call these bilobed. Based on the drawings, these appear to be two separate proximal seminal receptacles. Line 655 (and others): I noticed multiple times that the authors use “vas deference” rather than “vas deferens” Lines 669-670: Some similarities with Coryphellina as well, though that is not mentioned. Lines 727-728: Is there a reason this is not mentioned in the diagnosis? Line 784: for should be from Lines 880-881: The location of the vagina is not clear in Fig 4C Line 972: centrally should be proximally Line 975: Figure 6D should be 4D Line 1001: Bajaeolis is listed as uniserial in Figure 2 Line 1002: Figure 2 shows only uncompressed Line 1028: Only proximal in S18B, I also don’t see the wide prostate in the figure Line 1043: Don’t see the wide prostate in the figure Line 1053-1054: How is the radula triserial if the lateral teeth are absent? Lines 1138-1151: What species are included in the genus Apata? Should provide such information for consistency. Line 1171: With ridges? See Figure 2 Line 1172: “triangular or elongated…” Is this referring to the rachidian teeth? Line 1175: Proximal seminal receptacle not shown in Figure S26C Line 1190: placed on low elevations? Line 1229: The drawings in Figure S28 don’t show a wide, distinct prostate Discussion: Line 1422: annulled should be annulated I assume Figures: Please provide all tree files in the supplement, including for the concatenated data sets. ********** -->6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our For information about this choice, including consent withdrawal, please see our Privacy Policy..--> Reviewer #1: No Reviewer #2: No Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] To ensure your figures meet our technical requirements, please review our figure guidelines: https://journals.plos.org/plosone/s/figures You may also use PLOS’s free figure tool, NAAS, to help you prepare publication quality figures: https://journals.plos.org/plosone/s/figures#loc-tools-for-figure-preparation. NAAS will assess whether your figures meet our technical requirements by comparing each figure against our figure specifications. -->
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| Revision 1 |
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Neither “lumpers” nor “splitters”: A global revision of Flabellinidae s.l. nudibranchs (Gastropoda: Heterobranchia: Nudibranchia) PONE-D-25-43242R1 Dear Dr. Ekimova, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support.. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Michael Schubert Academic Editor PLOS One Reviewers' comments: Reviewer's Responses to Questions -->Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.--> Reviewer #1: All comments have been addressed Reviewer #3: All comments have been addressed ********** -->2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. --> Reviewer #1: Yes Reviewer #3: Yes ********** -->3. Has the statistical analysis been performed appropriately and rigorously? --> Reviewer #1: N/A Reviewer #3: Yes ********** -->4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.--> Reviewer #1: Yes Reviewer #3: Yes ********** -->5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.--> Reviewer #1: Yes Reviewer #3: Yes ********** -->6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)--> Reviewer #1: The authors have satisfactorily addressed most of the previous comments, and the manuscript has clearly improved in terms of clarity. The study represents a substantial and valuable contribution supported by a large dataset and a rigorous integrative approach. I understand and appreciate the authors’ rationale for maintaining relatively broad diagnoses given the high morphological variability of the group. However, I still believe that a slight reduction (focusing on the most consistent and informative character combinations) would improve their practical utility and readability without compromising detail. Similarly, although the abstract has been revised, it remains somewhat dense to me. A further reduction, emphasizing the main findings, would enhance its impact. Nevertheless, these are relatively minor points. Overall the manuscript is well executed, provides relevant findings and thus I consider is suitable for publication. Reviewer #3: (No Response) ********** -->7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our For information about this choice, including consent withdrawal, please see our Privacy Policy..--> Reviewer #1: No Reviewer #3: Yes: Jessica GoodheartJessica Goodheart ********** |
| Formally Accepted |
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PONE-D-25-43242R1 PLOS One Dear Dr. Ekimova, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS One. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Michael Schubert Academic Editor PLOS One |
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