Peer Review History
| Original SubmissionNovember 27, 2025 |
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Dear Dr. Shi, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 05 2026 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
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Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.... We look forward to receiving your revised manuscript. Kind regards, Dr. Umesh Sharma Academic Editor PLOS One Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. 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There is no requirement to cite these works unless the editor has indicated otherwise. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.--> Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: No ********** Reviewer #1: The contributions of the authors towards the comprehensive evaluation of across-provenance multi-site trials of Polygonatum cyrtonema to assess growth and medicinal traits variations are praiseworthy. The conjunction of ANOVA, PCA, and stated geo-climate correlations will cater advanced strategies for the breeding of the very important medicinal plant. Resource depletion was cited in the introduction, but it does not quantify the declines of wild P. cyrtonema populations (e.g. IUCN status, harvest volumes); please provide evidence as to why it is urgent for provenance trials to be conducted in the first place, as compared to other conservation initiatives. Considering the earlier single-site investigations conducted on floral phenotypes/minerals, how exactly does the current multi-environment design fill the already identified research gaps in GxE interactions for the coordinated analysis of growth-medicinal traits? While the discussion recommends the SY/YH provenances for breeding, the very high GxE interactions (marked differences in P×S effects across all traits) would suggest that these are adapted to specific sites; how should breeders make their recommendations with regard to stability versus mean performance? Saponin accumulation is altitude/AMT correlated but growth uncorrelated; offers on possible biosynthetic route or stress reactions explaining this plus if any conflicting viewpoints fasten or limit "ideal" provenance selection for the understory economy. High heritability estimates (h²=0.63-0.99) are given indicating good genetic control, yet due to low degree of replication (30/site/provenance), an overestimation might take place; how does this compare to similar medicinal plant trials (Dendrobium, Astragalus)? Were required field permits secured to collect wild rhizomes from the eleven provenances in four provinces? Soil physicochemical properties (pH, NPK, organic matter) and microbiome profiles were not measured at the three sites; how might unaccounted edaphic/microbial factors confound the reported GxE interactions? High values of PCV/GCV (>40% for some traits like polysaccharides) and almost perfect repeatability (h²=0.99) are reported; please discuss potential overestimation due to low replication (n=10 per provenance-block). Provenances SY and YH ranked highest by means of PCA; however, saponin content (key bioactive) was lower in these; does this imply trade-offs in breeding for "high-quality" versus specific compounds, and how were the scoring parameters weighted? The correlation analysis shows saponins positively correlated to altitude/AMT and uncorrelated to growth traits; suggest biological considerations (e.g., stress-induced saponogenesis) that can complement literature on these geo-climatic variables. Prior studies (e.g., Jiang et al. 2022 on mineral elements) exist on P. cyrtonema provenances; what unique advances does this multi-site trial offer beyond single-environment work, especially for understory economy applications? Reviewer #2: Review report of the manuscript entitled “Variation analysis of growth traits and medicinal components in different provenances of Polygonatum cyrtonema based on heterogeneous garden experiment” submitted for publication to the Journal of “PLOS ONE” The study assessed the variability in growth-related traits and medicinally important phytochemical groups—such as polysaccharides, saponins, flavonoids, and total phenolics—in Polygonatum cyrtonema derived from different provenances under a heterogeneous garden experiment. The results revealed highly significant variation across all evaluated traits among provenances, experimental sites, and their interactions, indicating that these traits are collectively regulated by genetic factors and genotype × environment interactions. Significant correlations were observed among the various traits, as well as between these traits and multiple environmental drivers, including altitude and temperature. The authors also identified the top three provenances that can be further utilized in breeding programs. The manuscript can be recommended for publication; however, the authors need to address the following comments and suggestions. Comments 1. (Line 23–24): The authors have mentioned high phenotypic and genotypic variance for the studied traits (in abstract); however, Table 4 presents a range of low, moderate, and high GCV and PCV values across different traits. This discrepancy should be clarified to ensure consistency between the text and the presented data. 2 (Line 45–47): The meaning of the sentence “Its dried rhizome, designated as ‘Polygonati Rhizoma’ in the Chinese Pharmacopoeia (ChP), is one of the three primary botanical sources for this official medicinal material” is unclear. The authors should explicitly specify which official medicinal material is being referred and which three primary botanical sources. 3. (Line 52–57): needs to simplify the complex sentences like “As one of the most promising medicinal and edible plants, P. cyrtonema holds a strategic position in the traditional Chinese medicine industry and the forest wellness economy, underscoring its significant economic and industrial value as a key understory economic crop in southern China” 4. The authors have not addressed the appropriate harvesting period after planting. As many Polygonatum species require 2–3 years to reach optimal harvest maturity, this information is crucial, as the harvesting stage can substantially influence both biomass accumulation and the yield of active medicinal constituents. Therefore, the authors should provide a clear and appropriate justification for evaluating medicinal components after only one year of growth. 5. The authors have included growth traits and leaf dimensions together with PCV, GCV, and P²h values in Table 4. However, variability parameters such as PCV, GCV, and P²h are generally expressed in percentages or as unitless values, rather than in physical units (e.g., cm or mg). Therefore, it would be more appropriate to present these variability parameters in a separate table to improve clarity and avoid confusion. 6. Rhizome biomass yield is a critical trait for Polygonatum species, both in terms of growth performance and economic value. Although the authors mention the estimation of dry biomass in the methodology, this parameter has not been included in the analysis or results. 7. please check font size and type (line 303) it should be uniform throughout the manuscript. 8. I think there is scope to analyze stability in yield of rhizome biomass and medicinal comports across different trial sites. Eberhart & Russell Model; AMMI (Additive Main Effects and Multiplicative Interaction) or GGE Biplot analysis can be used. ********** what does this mean?). If published, this will include your full peer review and any attached files.). If published, this will include your full peer review and any attached files.). If published, this will include your full peer review and any attached files.). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our For information about this choice, including consent withdrawal, please see our For information about this choice, including consent withdrawal, please see our For information about this choice, including consent withdrawal, please see our Privacy Policy..--> Reviewer #1: No Reviewer #2: Yes:Dr. Balkrishna TiwariDr. Balkrishna TiwariDr. Balkrishna TiwariDr. Balkrishna Tiwari ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] To ensure your figures meet our technical requirements, please review our figure guidelines: https://journals.plos.org/plosone/s/figures You may also use PLOS’s free figure tool, NAAS, to help you prepare publication quality figures: https://journals.plos.org/plosone/s/figures#loc-tools-for-figure-preparation. NAAS will assess whether your figures meet our technical requirements by comparing each figure against our figure specifications. |
| Revision 1 |
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Dear Dr. Shi, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Apr 08 2026 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.... We look forward to receiving your revised manuscript. Kind regards, Umesh Sharma Academic Editor PLOS One Journal Requirements: 1. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. 2. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author Reviewer #1: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions??> Reviewer #1: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.--> Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes ********** Reviewer #1: This is a well-structured and methodologically sound study that addresses an important gap in the cultivation and breeding of Polygonatum cyrtonea, a valuable medicinal plant. The authors have conducted a multi-site provenance trial across three heterogeneous environments, systematically measuring both growth traits and medicinal components. The statistical analyses are robust, and the findings are clearly presented. The revision has addressed most reviewer concerns thoughtfully, with clarifications on methodology, data availability, ethical permits, and limitations. The manuscript is now stronger and more transparent, though a few points still warrant further attention. Questions for the Authors Heritability estimates are very high (up to 0.99). While the authors defend this via multi-site replication, a brief note on potential limitations or comparisons to other perennial medicinal plants in the results/discussion would strengthen the interpretation. The one-year harvest is justified for early screening, but the economic implications of longer-term yield (biomass) should be more explicitly discussed in the context of understory farming. The trade-off between saponin content and overall performance in SY/YH provenances is well-handled, but the practical implications for breeders could be elaborated slightly more. The map copyright issue is resolved, but ensure the final figure caption matches the statement in the response. Heritability & Replication: You note that heritability estimates are consistent with other medicinal plant trials. Could you provide a brief comparative reference or range from those studies (e.g., Dendrobium, Astragalus) in the manuscript for context? Breeding Strategy: Given the trade-off between high saponin content and overall performance in SY/YH, what specific breeding strategy do you recommend for developing cultivars targeting high saponin versus balanced performance? Would you propose a hybridization program between SY/YH and high-saponin provenances like TG? Long-term Yield: While one-year data is suitable for early selection, how do you anticipate the ranking of provenances might change after 3–5 years of growth, particularly for rhizome biomass? Do you have preliminary multi-year data or plans for follow-up trials? Environmental Drivers: You identified clear geo-climatic drivers for saponins and flavonoids. Were soil properties (pH, nutrients) measured or considered? If not, do you think including them in future models would significantly improve predictive accuracy for medicinal component accumulation? Practical Recommendations for Farmers: For a farmer in a high-altitude, dry region of Zhejiang, which provenance would you recommend based on your findings, and why? Could you provide a simplified decision matrix or flowchart for growers in different eco-zones? Data Availability: You state all data are in the manuscript. Are the raw datasets (e.g., trait measurements per plant) available as supplementary files or in a repository? This would enhance reproducibility. Limitations and Future Work: You mention future work could use AMMI or GGE biplots. Do you plan to re-analyze this dataset with these methods, or are you referring to future trials? If the former, could including such an analysis in the supplementary materials strengthen the current paper? ********** what does this mean?). If published, this will include your full peer review and any attached files.). If published, this will include your full peer review and any attached files.). If published, this will include your full peer review and any attached files.). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our For information about this choice, including consent withdrawal, please see our For information about this choice, including consent withdrawal, please see our For information about this choice, including consent withdrawal, please see our Privacy Policy..--> Reviewer #1: Yes:Dr. Abdulkarim DakahDr. Abdulkarim DakahDr. Abdulkarim DakahDr. Abdulkarim Dakah ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] To ensure your figures meet our technical requirements, please review our figure guidelines: https://journals.plos.org/plosone/s/figures You may also use PLOS’s free figure tool, NAAS, to help you prepare publication quality figures: https://journals.plos.org/plosone/s/figures#loc-tools-for-figure-preparation. NAAS will assess whether your figures meet our technical requirements by comparing each figure against our figure specifications. |
| Revision 2 |
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Variation analysis of growth traits and medicinal components in different provenances of Polygonatum cyrtonema based on heterogeneous garden experiment PONE-D-25-60346R2 Dear Dr. Xiaodeng Shi, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support.... If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Umesh Sharma Academic Editor PLOS One Additional Editor Comments (optional): Please carefully cross-check all references, units, numerical values, and other minor details during the proof stage. Reviewers' comments: |
| Formally Accepted |
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PONE-D-25-60346R2 PLOS One Dear Dr. Shi, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS One. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Umesh Sharma Academic Editor PLOS One |
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