Peer Review History
| Original SubmissionAugust 6, 2025 |
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Dear Dr. Harsono, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Dec 26 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
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Kind regards, Sungwoo Lim, DrPH Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating the following financial disclosure: [This work was supported by funding from the National Institute of Mental Health (grant #P30MH062294) and the National Cancer Institute (grant #R01CA243910) of the National Institutes of Health. The content is solely the responsibility of the authors and does not necessarily represent the official views of the Center for Interdisciplinary Research on AIDS or the National Institutes of Health.]. Please state what role the funders took in the study. If the funders had no role, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." If this statement is not correct you must amend it as needed. Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf. 3. In the online submission form, you indicated that [A de-identified dataset and codebooks are available upon request to the corresponding author, and with approval of study Principal Investigators. Requests for restricted use of a de-identified dataset will require a data use agreement that outlines the terms and conditions that may include limitations on the use of data, obligations to safeguard the data, and privacy rights that are associated with transfers of confidential or protected data. The data use agreement is managed by the Yale University's Office of Sponsored Projects.]. All PLOS journals now require all data underlying the findings described in their manuscript to be freely available to other researchers, either 1. In a public repository, 2. Within the manuscript itself, or 3. Uploaded as supplementary information. This policy applies to all data except where public deposition would breach compliance with the protocol approved by your research ethics board. If your data cannot be made publicly available for ethical or legal reasons (e.g., public availability would compromise patient privacy), please explain your reasons on resubmission and your exemption request will be escalated for approval. 4. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. Additional Editor Comments (if provided): [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: No ********** Reviewer #1: General Assessment The manuscript addresses an important and timely topic by examining food insecurity among people with HIV (PWH) during the COVID-19 pandemic using a mixed-methods approach. The study provides valuable insights into multilevel drivers of food insecurity and integrates both quantitative and qualitative evidence from two urban clinics in the northeastern United States. However, the paper requires substantial revisions to improve methodological transparency, data validity, and overall clarity. Several critical aspects of sampling, measurement, statistical analysis, and qualitative reporting need strengthening before the paper can meet PLOS ONE standards for rigor and reproducibility. 1. Sampling, Inclusion Criteria, and Generalizability The study draws participants from an ongoing research collaboration on tobacco use among PWH, with recruitment based on documented tobacco use in the electronic medical record. This sampling frame introduces potential selection bias, as tobacco users may differ from non-users in socioeconomic, behavioral, and health characteristics that are also associated with food insecurity. Recommendation: Provide a detailed explanation of inclusion and exclusion criteria. Explicitly state whether all participants were current tobacco users. Discuss the implications of this sampling design for the generalizability of results, and include this limitation in the Discussion section. 2. Response Rate and Non-Response Bias Of 719 individuals contacted, only 283 completed the survey (~39% response rate). This relatively low participation rate raises concerns about non-response bias, particularly if respondents differ systematically from those who did not participate. Recommendation: If possible, compare key demographic or clinical characteristics between respondents and non-respondents using available electronic medical record data (e.g., age, gender, race, CD4 count, last clinic visit). If such data are unavailable, at least discuss the direction and magnitude of possible bias and its potential effect on prevalence estimates and regression outcomes. 3. Measurement of Food Insecurity Food insecurity was assessed using a single self-reported item about the perceived impact of COVID-19 on participants’ ability to obtain or pay for food. While this item provides contextual information, it does not represent a validated measure such as the USDA Household Food Security Survey Module or the HFIAS. Consequently, prevalence estimates and comparisons with other studies may be unreliable. Recommendation: • Justify the choice of a single-item measure and acknowledge its limitations. • Conduct sensitivity analyses using alternative cut-offs if applicable. • Expand the Discussion to note that the measure captures perceived rather than experienced food insecurity. 4. Study Design and Causality Because the study uses a cross-sectional design, it cannot establish causal relationships between COVID-related disruptions and food insecurity. The conceptual model presented in the Discussion implies bidirectional relationships, but these are not empirically tested. Recommendation: Clearly distinguish between observed associations and hypothesized causal mechanisms. Rephrase causal language (e.g., “led to,” “caused”) into non-causal wording such as “was associated with.” Include this clarification in both the Abstract and Discussion. 5. Statistical Analysis and Model Transparency The description of the statistical procedures lacks detail. It is unclear how variables were selected for the multivariable model, whether multicollinearity was assessed, how missing data were handled, and whether model assumptions were tested. The manuscript also does not provide full regression outputs (odds ratios, 95% confidence intervals, p-values for all predictors). Recommendation: • Present a complete multivariable logistic regression table. • Specify the model-building strategy (a priori, stepwise, or significance-based). • Report diagnostic statistics (e.g., VIF for multicollinearity, Hosmer–Lemeshow test, AUC). • Describe how missing data were treated (listwise deletion, imputation, etc.). • Conduct sensitivity analyses to test robustness (e.g., stratified by clinic site or alternate food insecurity thresholds). 6. Handling of Missing Data and Data Availability Although the manuscript mentions minor missing data, there is no clear statement on how these were managed. Furthermore, PLOS ONE requires a transparent Data Availability Statement. The current version only states that data are “available upon request,” which does not comply with journal policy. Recommendation: • Describe how missing values were handled analytically. • Deposit de-identified data and analysis code in a recognized repository (e.g., Dryad, Zenodo) or explain ethical restrictions preventing public release. • Provide the repository link or DOI in the Data Availability section. 7. Ethical Approval and Informed Consent The manuscript indicates approval by the Yale and SUNY Downstate Institutional Review Boards and that participants gave verbal consent, but the protocol approval numbers are not provided. Recommendation: Include IRB approval numbers for each institution and explain why verbal consent was used (e.g., due to remote data collection during the pandemic). Clarify how confidentiality and data protection were ensured during telephone interviews. 8. Funding Disclosure and Role of the Sponsor Funding is acknowledged from NIH grants (P30MH062294; R01CA243910), but it is unclear which authors received these awards and whether the funders had any role in the study’s design, analysis, or publication decision. Recommendation: Provide full grant numbers, specify award recipients, and explicitly state the funders’ role in accordance with PLOS ONE disclosure requirements. 9. Qualitative Analysis: Rigor and Integration The qualitative component lacks sufficient methodological detail. The process for coding, the number of coders, how inter-coder reliability or consensus was achieved, and whether data saturation was reached are not clearly described. The integration between quantitative and qualitative results is also limited. Recommendation: • Elaborate on the coding framework, analytical approach (inductive/deductive), and verification steps. • Include exemplar quotations supporting each theme in a table or appendix. • Explain how qualitative and quantitative findings were triangulated to construct the conceptual model. 10. Results Presentation and Figures/Tables Tables and figures require additional clarity. Denominators, missing data counts, and confidence intervals should be consistently reported. The conceptual framework figure should include clear labeling and be explicitly referenced in the text. Recommendation: • Ensure all tables include n values, percentages, and missing cases. • Add footnotes describing statistical tests used. • Improve the figure’s readability and provide a descriptive caption explaining each component. 11. Writing Quality and Structure While the paper is generally well organized, some sentences are awkwardly phrased or repetitive. The manuscript would benefit from professional English language editing to improve flow, grammar, and precision. Recommendation: • Revise for conciseness and clarity, especially in the Abstract and Discussion. • Consider editing by a native English-speaking academic editor to ensure alignment with PLOS ONE style. Summary Recommendation The study contributes important evidence about the intersection of HIV, food insecurity, and pandemic-related stressors. However, before publication, the authors must substantially enhance methodological transparency and analytic rigor. If the above revisions are adequately addressed—particularly concerning sampling clarification, statistical reporting, data availability, and ethical documentation—the manuscript could make a valuable contribution to the literature on health inequities and food security among vulnerable population. ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] To ensure your figures meet our technical requirements, please review our figure guidelines: https://journals.plos.org/plosone/s/figures You may also use PLOS’s free figure tool, NAAS, to help you prepare publication quality figures: https://journals.plos.org/plosone/s/figures#loc-tools-for-figure-preparation. NAAS will assess whether your figures meet our technical requirements by comparing each figure against our figure specifications.
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| Revision 1 |
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Food insecurity and COVID-19-related experiences among people with HIV: A mixed methods analysis and conceptual framework PONE-D-25-41950R1 Dear Dr. Harsono, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support . If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Sungwoo Lim, DrPH Academic Editor PLOS One Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author Reviewer #1: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions??> Reviewer #1: Partly ********** 3. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes ********** Reviewer #1: (No Response) ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: No **********
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| Formally Accepted |
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PONE-D-25-41950R1 PLOS One Dear Dr. Harsono, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS One. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Sungwoo Lim Academic Editor PLOS One |
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