Peer Review History
| Original SubmissionAugust 13, 2025 |
|---|
|
Dear Dr. Lam-Gordillo, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Dear Authors, two external reviewers have now assessed your manuscript "Resilience of macrobenthic functional traits to simulated heatwave ”, providing the comments that are reported below. As you can see, they both found your study interesting and generally worth of publication. At the same time, however, they identified a few issues that would require careful revision before this paper is recommendable for acceptance. Note that reviewer 2 had noticed some overlapping of this manuscript with other published and under review papers. Authors must pay special attention to this issue and provide clearly independent results that justify this paper. Based on the reviewers' and my own assessment, I'm thus here inviting you to take all of these comments into careful consideration and to modify your manuscript according to the provided constructive suggestions. I will then be happy to receive and further examine your revised version together with a point-by-point reply to each comment by myself and each reviewer, where you will need to explain any changes done to a particular piece of text, or include supported and convincing counterarguments to any points you may disagree with I'm confident you will find the present comments and suggestions relevant and useful to improve your work and I'm thus looking forward to hearing back form you by the due time. Please submit your revised manuscript by Dec 25 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Marcos Rubal García, PhD Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We noticed you have some minor occurrence of overlapping text with the following previous publication(s), which needs to be addressed: In your revision ensure you cite all your sources (including your own works), and quote or rephrase any duplicated text outside the methods section. Further consideration is dependent on these concerns being addressed. 3. Thank you for stating the following financial disclosure: “This research was funded by the New Zealand Government's Strategic Science Investment Fund (SSIF) to the New Zealand Institute for Earth Sciences (ESNZ; FPRS2606).” At this time, please address the following queries: a) Please clarify the sources of funding (financial or material support) for your study. List the grants or organizations that supported your study, including funding received from your institution. b) State what role the funders took in the study. If the funders had no role in your study, please state: “The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.” c) If any authors received a salary from any of your funders, please state which authors and which funders. d) If you did not receive any funding for this study, please state: “The authors received no specific funding for this work.” Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 4. Thank you for stating the following in the Funding Section of your manuscript: “This research was funded by the New Zealand Government's Strategic Science Investment Fund (SSIF) to the New Zealand Institute for Earth Sciences (ESNZ; FPRS2606).” We note that you have provided funding information that is currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: “This research was funded by the New Zealand Government's Strategic Science Investment Fund (SSIF) to the New Zealand Institute for Earth Sciences (ESNZ; FPRS2606).” Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 5. We note that Figure 1 in your submission contain [map/satellite] images which may be copyrighted. All PLOS content is published under the Creative Commons Attribution License (CC BY 4.0), which means that the manuscript, images, and Supporting Information files will be freely available online, and any third party is permitted to access, download, copy, distribute, and use these materials in any way, even commercially, with proper attribution. For these reasons, we cannot publish previously copyrighted maps or satellite images created using proprietary data, such as Google software (Google Maps, Street View, and Earth). For more information, see our copyright guidelines: http://journals.plos.org/plosone/s/licenses-and-copyright. We require you to either (1) present written permission from the copyright holder to publish these figures specifically under the CC BY 4.0 license, or (2) remove the figures from your submission: 1. You may seek permission from the original copyright holder of Figure 1 to publish the content specifically under the CC BY 4.0 license. We recommend that you contact the original copyright holder with the Content Permission Form (http://journals.plos.org/plosone/s/file?id=7c09/content-permission-form.pdf) and the following text: “I request permission for the open-access journal PLOS ONE to publish XXX under the Creative Commons Attribution License (CCAL) CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). Please be aware that this license allows unrestricted use and distribution, even commercially, by third parties. Please reply and provide explicit written permission to publish XXX under a CC BY license and complete the attached form.” Please upload the completed Content Permission Form or other proof of granted permissions as an "Other" file with your submission. In the figure caption of the copyrighted figure, please include the following text: “Reprinted from [ref] under a CC BY license, with permission from [name of publisher], original copyright [original copyright year].” 2. If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only. The following resources for replacing copyrighted map figures may be helpful: USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/ The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/ Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/ Landsat: http://landsat.visibleearth.nasa.gov/ USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/# Natural Earth (public domain): http://www.naturalearthdata.com/ 6. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. Additional Editor Comments (if provided): Dear Authors, two external reviewers have now assessed your manuscript "Resilience of macrobenthic functional traits to simulated heatwave”, providing the comments that are reported below. As you can see, they both found your study interesting and generally worth of publication. At the same time, however, they identified a few issues that would require careful revision before this paper is recommendable for acceptance. Note that reviewer 2 had noticed some overlapping of this manuscript with other published and under review papers. Authors must pay special attention to this issue and provide clearly independent results that justify this paper. Based on the reviewers' and my own assessment, I'm thus here inviting you to take all of these comments into careful consideration and to modify your manuscript according to the provided constructive suggestions. I will then be happy to receive and further examine your revised version together with a point-by-point reply to each comment by myself and each reviewer, where you will need to explain any changes done to a particular piece of text, or include supported and convincing counterarguments to any points you may disagree with I'm confident you will find the present comments and suggestions relevant and useful to improve your work and I'm thus looking forward to hearing back form you by the due time. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Partly Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: No Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: Yes ********** Reviewer #1: First, I would like to thank the authors for this interesting work, which I believe can make an excellent contribution to the study of functional diversity and the application of its metrics, which are necessary for a better understanding of how ecosystems function in the context of global climate change. Below is a general comment on the manuscript, followed by comments on each section. Overall, the study is well conceptualised and structured, with a solid foundation in marine community ecology. The experimental concept is promising and provides valuable and interesting insights into how marine macrofaunal communities respond to the main effects of climate change, to which they are increasingly exposed. The experimental design is well constructed and balanced, supported by an adequate number of replicates, which gives the study good statistical representativeness and robustness. However, in reporting and describing the study, several gaps were identified, particularly regarding sample collection, and an adequate description of the data processing for the calculation of the functional metrics, which are central to the study, was not provided. As a result, it was not possible to consult the data (including means and standard deviations) obtained, as these were not clearly presented in either the main text or the supplementary materials. This makes it difficult to interpret the results, which are displayed only in the graphs, and also hinders comparison with other studies and a thorough evaluation of the work carried out. For easier reading, I am also attaching a PDF file containing this information in this format, as well as a PDF file of the manuscript with the corresponding comments. INTRODUCTION Overall, the Introduction is well written, and the objectives of the study are clearly explained. However, it requires some additions. As the study mainly focuses on the “functional” aspects of the infaunal community, a brief, in-depth description and definition of functional diversity and its metrics is needed. 78: “Functional diversity also plays a critical role in resilience.” This is true, but it would be useful to spend some time explaining what functional diversity is and how it can be measured. I suggest briefly describing the metrics used to estimate functional diversity (which is not straightforward) and providing some references. Describing these metrics may help readers, including non-specialists, to better understand your results. 94-95: “functional metrics (i.e., individual functional traits, functional indices)”. It is not clear what type of indices you include under the definition of “individual functional traits”. In particular, it is not clear from the initial reading whether this refers to the organism level or to a single functional trait. I assume it refers to a single functional trait. If so, I suggest changing “individual functional trait” to “single-trait indices” and “functional indices” to “multi-trait indices”. “Single-trait indices” include, for example, the CWM that you mention later, while “multi-trait indices” include “functional richness, evenness”, etc. It would be more accurate to refer to these broader categories. MATERIALS AND METHODS The study and its objectives are promising, and it may provide new perspectives on understanding the responses of macrobenthic infaunal communities to more frequent events driven by global climate change. However, some aspects need clarification, from the experimental design and sample collection to data processing and analysis. Furthermore, for greater accuracy, it would be useful to include separate tables with the abundance matrix and species-trait matrix, perhaps in the supplementary materials. This would allow for a better understanding of the results. Figure 1. Please check the caption and ensure that the letters correspond accurately to those indicated in the figure. Correct "e" to "d" in the figure. 111: Since you are discussing the OTCs, please refer directly to Figure 1d. 117-118: It is not clear whether the OTCs were removed during the night and at high tides. Please clarify. 119: For greater clarity, please specify that the “Control treatment” is without the OTCs. 129: Did you remove the temperature loggers from the control plots during the night and at high tide? How long is the tidal excursion? Did the logger measure temperature only in the top 1 cm of the sediment? If so, how can you be sure that the temperature also increases in the lower layers? 132-137: You mentioned the use of a PVC corer for macrofaunal sampling. How many cores did you collect per plot? Please specify. Furthermore, you used a PVC corer with a depth of 15 cm for macrofaunal sampling. Based on this, did you observe any sediment stratification? Did you consider all the macrofauna within the 15 cm, or did you collect it only from the surface layers? As you correctly mentioned in the introduction, some species may respond to thermal increases by moving within the sediment. Therefore, it would be interesting to observe this in the cores. Additionally, the procedure for macrofaunal sampling is not very clear. Please clarify: once collected, was the core rinsed and sieved through a 0.5 mm mesh? 160: Regarding Table 1, there is an inconsistency between the acronyms and the trait modalities for the traits “Living Habit”, “Movement Method”, and “Sediment Position”. Please check and correct. 165-169: It is not clear how you calculated the four metrics, particularly which data you used. Generally, obtaining these metrics requires a combination of the species abundance matrix and the trait matrix (with fuzzy coding). For greater clarity, please revise this section to specify how you treated the data before calculating the metrics. This clarification would help readers understand the results obtained. If you used a different procedure, please specify it. Also, indicate whether you performed standardisation or transformation of the data. 174: Are the factors mentioned related to the simulated heatwaves (5 days and 7 days)? This is not clear. Please specify the factors considered and the levels for each factor. 172-178: This section is somewhat difficult to follow and may cause confusion. PERMANOVA was used to test the effects of MHWs on taxonomic and functional metrics, correct? If so, it is redundant to restate the factors. If not, it is unclear which factors are being tested. As mentioned above, please specify the factors being analysed. Additionally, the phrase “the Euclidean distance for the single macrobenthic metrics” is unclear; it is not specified which metrics are being referred to. I recommend clarifying this short paragraph to avoid misunderstandings regarding the statistical analysis performed. 183: Do “Functional trait data” refer to the combination of the macrofaunal data and trait “fuzzy coding assignation”? 184-187: This section is clearer than the previous one. I suggest making changes to the previous section, using this one as a starting point. RESULTS Overall, the results are well presented and consistent with the Materials and methods section. However, I suggest further integration and more in-depth descriptions in the main text, as well as modifications to the plots. Generally, the choice of plot types is good, and they are easy to read, even for non-specialists. However, some plots need to be checked and adjusted to ensure consistency with the descriptions in the main text. 214-228: I suggest providing a supplementary table with the abundance and diversity data to support the interpretation of the boxplots. It may also be useful to describe in the main text the magnitude of these changes among the treatments (even if not significant in some cases), including values, as has already been done previously for temperature. 236-237: Please specify the p value. 247-252: How does the community structure change among the treatments? I suggest providing a description of the community structure in all treatments and indicating which species or taxa drive the arrangement in the nMDS. The same applies to the functional trait composition. It is also possible to overlay as vectors the species that contribute most to these dissimilarities. Please take this into consideration. Otherwise, it must be specified which main differences are supported by the statistical analysis. 254–265: As in the previous comment, for greater comprehensiveness, it may be useful to provide at least the mean values and standard deviations of the multi-trait indices (FRic, FEve, etc.) to better understand the magnitude of the differences. I suggest adding a supplementary table with the means of all the descriptors considered (abundance, richness, diversity, FRic, FEve, etc.) to support the reading of the main text and the plots. 270-272: Figure 7. In the caption, the sentence “The colour scale indicates the magnitude of the correlations” is assumed to refer to the colour gradient bar on the right. Does it represent the interval of the Spearman correlation coefficient (rho (ρ) = +1, 0, -1)? If so, please specify this in the caption and also next to the scale bar. Furthermore, if this is the case, there appears to be an inconsistency between the main text and Figure 7. According to the main text, a significant negative Spearman correlation was found between the Control and the trait modality “burrower”. In Figure 7, a negative correlation would be expected to be shown with a “blue” shade. Is the colour scale inverted? Please clarify this aspect to avoid misinterpretation of the results. 277-283: Figure 8. There is the same issue with the visualisation of the correlation. It appears that the interval is inverted: positive correlations are blue and negative correlations are red. Please ensure that the interval on the right matches exactly with the output of the level plot, as it currently appears inconsistent. As previously suggested, if the interval on the right (+1 / -1) corresponds to the Spearman coefficient (rho), please specify this next to the gradation scale in the plot and/or in the figure caption. DISCUSSION This section provides an overview of the study and its findings. However, although the arguments are valid and appropriate, they seem to enhance and reinforce the study and its findings only partially. The study required significant practical and interpretative effort, which I believe deserves greater recognition. While it is acknowledged that interpreting functional diversity metrics is not easy, if these metrics are used, it is necessary to provide a valid explanation of their selection and the type of information they convey. Only some of these metrics are explained, while others, which are also informative, are omitted. Furthermore, the arguments supporting ‘functional’ resilience are unconvincing because they rely solely on evidence of redundancy, which may result from bias in the selection of functional traits. I recommend that the authors supplement their argument by providing supporting data, for example in the form of tables. This would lend further weight to the arguments presented in this section and give due recognition to the work undertaken. 293-294: In my opinion, the findings related to the functional traits and metrics do not necessarily indicate resilience of the community but rather demonstrate redundancy in functional diversity during the experiment. Therefore, the sentence “however, functional traits and functional metrics were less affected, suggesting a degree of functional resilience” is problematic. Firstly, since Functional Evenness and Functional Dispersion changed significantly according to your results, this is inconsistent with your statement. Secondly, as I understand it, the experiment simulates a heatwave during low tide with relatively short exposure (4 hours per day, every day), alternating with high tide. Is this correct? Do you think this exposure is sufficient to expect changes in functional traits? Additionally, providing information on how many cores were collected from each plot each day would help to support this statement. Furthermore, a brief description of the community in the “Results” section could also help to predict the response to the heatwave experiment. Furthermore, in selecting the functional trait, I notice some overlap between Living Habit and Movement Method, for example in the modalities “Crawler” and “Burrower”. The choice of trait depends on the structure of the community, and sometimes different species may share the same functional trait. Since trait selection is arbitrary and there is no standard rule for how many or which traits to consider, have you tried considering only one of the two functional traits in question—either “Movement Method” or “Living Habit”? This might reduce overlap and redundancy. How can you explain that the observed redundancy is a response of the community to the HWs, rather than a redundancy resulting from the “over-expression” of the same trait due to overlap between trait modalities? 296–298: Does the increase in temperature refer only to the first centimetre (0–1 cm) of the sediment? Did you observe thermal increases below the first sediment layer as well? If so, as you correctly mentioned in the introduction, some species might move within the sediment. In this case, documenting the effect of temperature increase could be challenging if the data refer only to the sediment surface. 330-346: What about the other indices, Functional Evenness and Functional Dispersion? According to your results, they change significantly between the control and treatments, as shown in the boxplot in Figure 6. It would be noteworthy to comment on their trends. Why does FDis increase significantly with exposure to the HW? The same question applies to FEve. Reviewer #2: The authors conducted an in-situ warming experiment using open-top chambers (OTCs) in an intertidal estuary to assess heatwave-induced changes in macrofaunal community composition and functional trait resilience. The benthic community was sampled after 5 and 7 days of heating to additionally test the effect of increased warming duration. A key finding of this study is the persistence of community functions due to functional redundancy after a change in macrofaunal abundance and diversity. The topic and overall objectives of this study are timely and relevant, and the results have the potential to contribute valuable insights into the resilience of intertidal benthic communities to heatwaves. However, the manuscript in its current form requires significant revision before it would be suitable for publication in a high-impact journal. To my knowledge, this is the third manuscript arising from the same experimental setup, alongside the already published Lam-Gordillo et al., 2025 (“Effects of in situ experimental warming on metabolic expression in a soft-sediment bivalve”) and Douglas et al., in review (“Simulated heatwave alters intertidal estuary greenhouse gas fluxes: duration and degradation state determine response”). Given this context, it is essential that the present manuscript clearly articulates what new knowledge is being provided beyond those studies. At present, there is substantial overlap in both methodology and findings. For example, the section “Simulated marine heatwave: intertidal sediment warming” closely replicates previously published results (e.g., “Seafloor temperature and sediment characteristics” in Lam-Gordillo et al., 2025. Additionally, a large part of the community composition results reiterates material already addressed in Douglas et al., in review. This leaves the functional-trait component as the primary novel contribution; however, as these analyses are limited to a single experimental site, the study does not fully leverage the broader context (muddy vs. sandy sites) that has been central to the complementary papers. To strengthen the manuscript’s contribution, I strongly encourage the authors to (1) streamline or reference previously published overlapping results rather than repeating them, (2) clearly define the unique research question and interpretive framework that distinguishes this study from the others, and (3) consider expanding the functional-trait approach to include data from both experimental habitats where possible, as this would better reveal context-dependent responses and ecological relevance. Language and format editing should also be revised throughout the manuscript. More specific comments below Title: Adjust the title to the scope of the study. Introduction: Paragraph 61-65: The previous paragraph states that intertidal macrobenthic communities are generally well adapted to extreme conditions, while this paragraph describes them as highly sensitive. Please clarify these contrasting statements. Methods: Line 125: “Environmental data” is a bit too general for just including temperature here. Line 133: The methods mention that there are 10 plots for Control, Short, and Long treatments. Does this mean the Control plots were sampled only after 7 days? If so, could you clarify how comparable a 7-day Control is to the 5-day heating treatment, particularly given the changes in weather conditions during the final two days (Figure 2)? This has important implications for interpretation, as heating and exposure time are confounded and cannot be disentangled. Results: A detailed Section on “Simulated marine heatwave: intertidal sediment warming” is mostly unnecessary as Lam-Gordillo et al., 2025 already stated that the temperatures are significantly different between OTC and control. Furthermore, Douglas et al. (in review) confirmed significant difference and additionally specifies the actual temperatures. However, a shortened version for the context should remain. But these shortened information can also be presented in the methods section. Throughout the results section: Please ensure accuracy when describing the boxplot figures. Boxplots display the median (not the mean), along with the interquartile range and potential outliers. Some statements currently interpret boxplots as showing mean values, which should be corrected for clarity and statistical accuracy (Lines 216-224, 256-260). Line 238: The statement that “suspension feeders were significantly higher in the control treatment compared to the short and long treatment” seems difficult to evaluate as no quantitative data for suspension feeders are provided. Table 2 only reports test results, and Figure 4 shows proportional feeding mode contributions. Please include the underlying abundance data to support this conclusion. Line 246: Please clarify if a nMDS or MDS was conducted. Lines 256-265: This section exemplifies a need for caution when interpreting statistical comparisons among Control, Short, and Long treatments. As noted above, sampling time and heating duration are confounded, and therefore not all treatment contrasts represent clean tests of heating effects. Please clarify which comparisons are appropriate and adjust interpretations accordingly. Lines 267-283: Positive and negative correlations described here do not match the colour scale presented in Figure 7. The colour scale shows dark red to be highly positively correlated and dark blue for highly negative correlation. Please clarify and realign your interpretations (or correct the figure). Discussion: Line 303-305: This is the first time where actual abundance data are presented. Given that community metrics are a central aspect of the study and can help explain several of the observed responses, it would be important to present these data more comprehensively elsewhere. In addition, when reporting abundance, please provide an appropriate unit (e.g., individuals per core, per square meter). Yet again the question – How reasonable is it to compare the Control abundance to Short treatment abundance? Line 321-323: Repetition of results line 238. Line 323-325: Where is the data showing the elevated densities of scavengers? Please also elaborate on the cascading effect and emerging of organisms and suggest more references on this discussion. Especially, as it was stated earlier (line 313) that burrowing into the sediment is a behavioural adaptation in response to heat stress. The suggested references, discussing stranded carrion and carrion cycling, are only vaguely applicable here. Line 330: Please clarify “… were less responsive…” compared to? Line 333-334: Be specific about which species. Furthermore, if the majority of the reduction in abundance is attributed to the three dominant species (as noted in line 316), it would be valuable to discuss their functional traits and roles in the community in order to place these changes into a broader context of community trait redundancy. Cheers, Norman Göbeler ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: No Reviewer #2: Yes: Norman Göbeler ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] To ensure your figures meet our technical requirements, please review our figure guidelines: https://journals.plos.org/plosone/s/figures You may also use PLOS’s free figure tool, NAAS, to help you prepare publication quality figures: https://journals.plos.org/plosone/s/figures#loc-tools-for-figure-preparation. NAAS will assess whether your figures meet our technical requirements by comparing each figure against our figure specifications.
|
| Revision 1 |
|
Dear Dr. Lam-Gordillo, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Dear Authors, I have received the reports from referees on your manuscript, "Redundancy of macrobenthic functional traits boosts resilience to a simulated heatwave ", submitted to Plos One. Based on the advice received, I have decided that your manuscript will be recommended for publication after you have carried out the final suggestions by referees. Best regards Please submit your revised manuscript by Jan 31 2026 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Marcos Rubal García, PhD Academic Editor PLOS One Journal Requirements: If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author Reviewer #1: (No Response) Reviewer #2: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions??> Reviewer #1: Yes Reviewer #2: Partly ********** 3. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: Yes ********** Reviewer #1: I would like to thank the authors for carefully revising this manuscript, which I still believe may be an excellent contribution to the study and application of functional metrics, necessary to understand and predict how ecosystems may respond to the effects of global climate change. Overall, the authors have thoroughly revised the manuscript by checking and correcting inconsistencies between the main text and the graphs. They have also properly integrated the manuscript with the required information and explanations regarding the experimental design and methodologies used, as requested. Furthermore, they have provided sound and valid counterarguments to the comments expressed in the introduction and discussion sections, and have rightly added supplementary information, allowing for a better elaboration of the data obtained and a clearer interpretation of the results. In light of the comments and revisions made, I support the acceptance of the manuscript. However, I ask the authors to further check and clarify a few aspects that have emerged after a careful assessment of the data provided in the supplementary materials, which were not previously presented. I consider this further minor revision a crucial step towards ensuring the scientific validity and consistency of the study, and ultimately necessary for acceptance. Below, you can find some additional comments concerning the “Data analysis” section and the “Results”. For easier reading, I am also attaching a PDF file containing this information in this format. Materials and Methods Data analysis Line 188 and S1 Table: Firstly, thank you for providing this table. The authors mentioned that no data standardisation or normalisation was performed. Clarification of the values presented in the tables is required. Is this combined matrix obtained by merging species abundances with functional categories? Such merging would provide more reliable quantitative information regarding the functional aspects of the community. Otherwise, this table appears to provide only qualitative information related to the presence of each species or taxon and their relative affinity for certain trait modalities, without weighting by the number of individuals (i.e. abundance) found. Consequently, the values are likely to be low in dispersion, and there may be no need for standardisation or normalisation. In my opinion, a quantitative trait analysis would be more informative in the context of this study, and I would suggest considering this type of analysis, as it could add robustness to the work. I would like to clarify that the procedure performed by the authors is correct, but it may be less informative and contextualised, since variations in species abundances are primarily indicative of changes in community structure when exposed to disturbance. If the authors wish to consider my suggestion to obtain a new merged species-trait matrix weighted by abundance, it is necessary to ensure consistency in the calculation of other functional metrics, including CWM. In this case, standardisation or normalisation may also be required. For example, the high abundance of the amphipod Paracorophium excavatum may not be comparable with the lower abundances of other species (e.g. Paradoneis lyra). Lines 205-209: It is stated that “Euclidean distance” was used for both structural metrics (i.e. abundances, S, and H’) and functional metrics (FRic, FEve, FDis, FR, and CWM). However, as the functional trait analysis includes both categorical traits (e.g. feeding mode, movement method, etc.) and continuous traits (e.g. body size), the literature recommends using the Gower dissimilarity index (Gower, 1971; Teichert et al., 2017). Euclidean distance is typically applied only to continuous (environmental) variables. Results Lines 299-301: The FRic values are surprisingly high given the number of species found (25). A high FRic indicates a very wide trait space, and this index is usually closely linked to species richness. Lines 304-305: Please verify that the FEve values exactly match those provided in Table S6. (FEve values range from 0 to 1.) Reviewer #2: Review of 1st revision of Lam-Gordillo et al. “Redundancy of microbenthic functional traits boosts resilience to a simulated heatwave” (PLOS One, December 2025) The manuscript has experienced a thorough revision after its initial submission and the authors have addressed all remarks and I particularly appreciate the effort invested into the data provision and strengthening the ecological context of the study. Most of the issues have been sufficiently resolved, but a few comments remain. The referred line numbers below are according to the track change document. Lines 61: Please clarify these contrasting statements. Line 61: “Estuarine macrobenthic organisms are likely well adapted to cope with extreme weather events such as MHWs …” and line 69: “… these organisms are predicted to be more sensitive to temperature extremes” Lines 165 (Macrobenthic fauna sampling): Please add the sampling dates for the macrofauna. The current description is confusing due to inconsistencies between the manuscript and the revision responses. Specifically, the manuscript describes experimental treatment days, while the responses alternatively state that (i) Control and Long (7-day exposure) were sampled after 7 days, with the Short (5-day exposure) treatment sampled after 5 days, and (ii) that all treatments were sampled simultaneously after the 7-day experimental period. Please clarify. Lines 242–249 and Fig. 2: Please clarify whether temperature differences between the Short and Long treatments were statistically tested. In addition, it is difficult to identify from Fig. 2 when the OTC chambers were deployed during the Short treatment, as temperatures appear consistently higher than the Control across all days. If the Short treatment was sampled at the same time as the other treatments (23/02/2024?) – Would you have an explanation why the temperature was elevated on 17 and 18/02/2024? Lines 394–403: While the example of functional traits (e.g. suspension feeders, predators, scavengers) in the Results section (lines 287–291) is appropriate, caution is needed when interpreting and linking these traits, as the discussion establishes an apparent link between them that is not directly supported by the data. To my knowledge, a large body of literature indicates that a common response of benthic invertebrates to excessive heat is deeper burrowing into the sediment (agreeing with your suggestion in line 377), rather than surfacing, unless driven by hypoxia, which I don’t suppose to be the case here. The manuscript suggests surfacing of animals and links this to a trophic cascade of increased resource availability for scavengers feeding on carrion and nutrient cycling. Given the lack of direct observations or data on animal movement in this study, such an interpretation is not sufficiently supported and should be reconsidered or more cautiously framed. In addition, given the availability of data now, I ask the authors to re-examine Table S5. The reported trait proportions (3% in Control, 5% in Short, and 6.8% in Long) appear to correspond to predators rather than scavengers (0.4%, 0.8%, 0.8%, respectively). Please verify this point and revise the text and discussion accordingly. Line 413: According to Mouillot et al. (2013, “A functional approach reveals community responses to disturbances”), FDis is generally expected to decrease under disturbance due to the loss of functions. In contrast, in this study, FDis significantly increases. The authors may wish to contextualize these results – Could the observed pattern be related to the openness of the study system? Recommended (constructive, clearly optional) Given that the authors have conducted extensive analyses in related work, resulting in two previously published articles, it would be valuable to further interpret the observed changes in functional traits in relation to the metabolic responses of Austrovenus stutchburyi and/or, potentially, to changes in greenhouse gas fluxes. For example, the significantly increased proportion of bioirrigators in the Long treatment (and the near-significant increase in the Short treatment) could be discussed in the context of the elevated CO₂ and CH₄ influxes reported in Douglas et al. (2025). This additional interpretation is optional and, although speculative, I find it highly interesting. It could further enhance the ecological integration of the study. ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: No Reviewer #2: Yes: Norman Göbeler ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] To ensure your figures meet our technical requirements, please review our figure guidelines: https://journals.plos.org/plosone/s/figures You may also use PLOS’s free figure tool, NAAS, to help you prepare publication quality figures: https://journals.plos.org/plosone/s/figures#loc-tools-for-figure-preparation. NAAS will assess whether your figures meet our technical requirements by comparing each figure against our figure specifications.
|
| Revision 2 |
|
Redundancy of macrobenthic functional traits boosts resilience to a simulated heatwave PONE-D-25-44021R2 Dear Dr. Lam-Gordillo, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support . If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Marcos Rubal García, PhD Academic Editor PLOS One Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
|
PONE-D-25-44021R2 PLOS One Dear Dr. Lam-Gordillo, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS One. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Marcos Rubal García Academic Editor PLOS One |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .