Peer Review History
| Original SubmissionDecember 16, 2024 |
|---|
|
Dear Dr. Job, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jul 22 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Rita Fuchs Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. To comply with PLOS ONE submissions requirements, in your Methods section, please provide additional information regarding the experiments involving animals and ensure you have included details on (1) methods of sacrifice, (2) methods of anesthesia and/or analgesia, and (3) efforts to alleviate suffering. 3. Thank you for stating the following financial disclosure: NIDA DA000547 Please state what role the funders took in the study. If the funders had no role, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." If this statement is not correct you must amend it as needed. Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf. 4. We note that the grant information you provided in the ‘Funding Information’ and ‘Financial Disclosure’ sections do not match. When you resubmit, please ensure that you provide the correct grant numbers for the awards you received for your study in the ‘Funding Information’ section. 5. Please expand the acronym “NIDA” (as indicated in your financial disclosure) so that it states the name of your funders in full. This information should be included in your cover letter; we will change the online submission form on your behalf. 6. Thank you for stating the following in the Acknowledgments Section of your manuscript: The authors wish to acknowledge Dr. Jonathan L Katz in whose lab most of the experiments were carried out. Both authors contributed to data analysis and to the writing of the manuscript. MOJ designed and conducted behavioral experiments and statistical analysis. This work was funded by the Department of Health and Human Services/National Institutes of Health/National Institute on Drug Abuse/Intramural Research Program, Baltimore, MD, USA [grant -DA000547]. This work was also supported by the Francis Lax Fund for Faculty Development at Rowan University. This work was also supported by startup funds from Rowan University, Camden, New Jersey. We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: NIDA DA000547 Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 7. Please include your full ethics statement in the ‘Methods’ section of your manuscript file. In your statement, please include the full name of the IRB or ethics committee who approved or waived your study, as well as whether or not you obtained informed written or verbal consent. If consent was waived for your study, please include this information in your statement as well. 8. We note that you have included the phrase “data not shown” in your manuscript. Unfortunately, this does not meet our data sharing requirements. PLOS does not permit references to inaccessible data. We require that authors provide all relevant data within the paper, Supporting Information files, or in an acceptable, public repository. Please add a citation to support this phrase or upload the data that corresponds with these findings to a stable repository (such as Figshare or Dryad) and provide and URLs, DOIs, or accession numbers that may be used to access these data. Or, if the data are not a core part of the research being presented in your study, we ask that you remove the phrase that refers to these data. 9. Please remove all personal information, ensure that the data shared are in accordance with participant consent, and re-upload a fully anonymized data set. Note: spreadsheet columns with personal information must be removed and not hidden as all hidden columns will appear in the published file. Additional guidance on preparing raw data for publication can be found in our Data Policy (https://journals.plos.org/plosone/s/data-availability#loc-human-research-participant-data-and-other-sensitive-data) and in the following article: http://www.bmj.com/content/340/bmj.c181.long. Additional Editor Comments: This is a thought-provoking paper that clearly moves the field forward. The relatively small sample size and limited variation (males only, single strain) introduces some weaknesses into data interpretation. These and other feedback about the limitations of the modeling approach should be acknowledged prominently. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: I Don't Know Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: Yes ********** Reviewer #1: The present study employs behavior economics and cluster analyses to probe potential distinctions between individual profiles exhibited in a rat model of cocaine taking. The study has several strengths including detailed analyses of individual rat profiles, employment of cluster analyses which extend commonly employed median splits, as well as examination between different dependent variables. The manuscript is largely well written but could benefit from truncation of results in the main text in favor of a placing some data and results into a supplement. The main conclusion that median split subgrouping of intake levels, particularly determined using a single dose of drug, are unlikely to capture meaningful distinctions between subgroups/subpopulations is supported by the results—this is an important point. Overall, this study is likely to be of interest to researchers in behavioral pharmacology and neuroscience but could be improved in a number of ways. Was any type of power analyses considered? The dataset is based on a low number of subjects (although they are examined at multiple intake doses). For comparison, the Edwards et al 2007 study employed 40 rats compared to the 11 employed here. Is there concern that there may be insufficient subject variation to capture critical features of “typology”? i.e. to identify sufficiently different subjects based on cluster analyses. Conversely, there are extensive statistical consideration of a rather limited dataset involving many comparisons between different pairs of means. Please explain why type I errors are not a concern with this approach. Intake fitted curves (figure 4) appear to be inappropriate. Namely, fitted curves go to zero at higher doses but actual intake does not. This appears to be due to significant skew in the upper end of the dose range which is not accounted for by the modeling employed. Along these lines, visualization of data in figure 4 could benefit from use of log scale on the X-axis. In addition, the dose-response curve was incomplete (did not capture the end of the descending arm). Some discussion of this apparent discrepancy is warranted in addition, some description of the actual pattern of the curve in relation to the idealized possibilities presented in Figure 1 would seem appropriate. Generally, the relation of alpha from demand curves only loosely corresponds to motivation and using the terms interchangeably is controversial. The authors should consider providing citation to support their contention as well as potential providing alternative interpretations. Overall, I concur with the authors that the prior use of the term addicted (e.g. based on median split of drug intake at a single dose) is inappropriate but I feel their own usage may have challenges too. First, rats do not get addicted but they can exhibit addiction-like behavior; this is an important distinction as addiction or substance abuse disorder are clinical conditions which may be modeled in rodents. Second, the need for “all the variables of the IUDR” to exhibit differences between subgroup appears arbitrary. Why must "meaningful" subgroups differ along all dimensions? Is there clinical evidence that individuals suffering from substance abuse disorder exhibit differences along all of these dimensions or is this a strategy to describe maximally subgroup a heterogenous sample of rats? i.e. is this modeling clinical conditions or behavioral analyses? If it is the latter then the terminology of addiction or addiction-like would seem inaccurate as the authors seek to merely describe subgroups of rats. For modeling addiction, it would be important to consider the available (although limited) behavioral economic analyses of human drug taking patterns. Moderate/minor concerns: Conclusion in abstract should reiterate high vs low takers based on median split does not produce distinct subtypes; as noted above there are many ways to divide a group and some may produce more meaningful distinctions than others (i.e. top 10% vs bottom 10% may have utility for distinct typology categorization). Figure 1 should note that the various intake patterns presented may not cover all possible patterns. A lot of the data (amplitude, mean, width and AUC; Qo and Alpha) is presented in the text as well as in table 2; this is redundant. I recommend removing the data presented in the text. There are extensive, possibly excessive, analyses of the data centered of median split for each derived variable. Much of this information should be put into a supplement and have the main findings retained in the main article results; perhaps retain the median split based on alpha (as this has its own subtitle albeit, it is unclear why this variable has its own subtitle and others do not) or just state the general findings prior to the describing the results from the clustering analyses. Reviewer #2: This manuscript by Castaneda and Job thoughtfully challenges the common practice of using median splits of drug intake to classify psychostimulant users as "high" or "low" responders, an approach often complicated by the typical inverted U-shaped dose-response (IUDR) curve and the critical distinction between intake and motivation. The authors’ central critique of simplistic dichotomization based on median splits is timely and well-argued, representing an important contribution to discussions on methodological rigor in behavioral phenotyping. The effort to employ more sophisticated, multi-parameter methods to differentiate responder types is a commendable and important direction for the field. Using 11 male Sprague Dawley rats self-administering cocaine, they derived structural and behavioral economic variables from individual IUDR curves. The generation of such a multi-faceted dataset from individual subjects is a valuable aspect of the study design. The authors found that median splits led to inconsistent group compositions, while their clustering analyses consistently revealed only one cluster across various datasets. They conclude that "high" and "low" drug takers, as commonly defined, might not represent distinct user types and propose that true distinctions would require differences across all six of their derived IUDR and economic variables. While the conceptual framework is appealing, significant concerns with the current execution and reporting limit the study’s generalizability and the authors’ claims. Strengths of the Manuscript The manuscript effectively highlights the inherent instability and potential for misclassification when using median splits on single measures of drug intake, especially with complex dose-response data like IUDR curves. This is a crucial reminder for the field. The introduction of a multi-variable clustering approach based on both IUDR characteristics and behavioral economic parameters is a methodologically sophisticated step forward. Major Comments: 1 - The study’s conclusions are drawn from a very small sample of 11 male Sprague Dawley rats sourced from a single supplier, which raises significant concerns. With such a small sample size, the statistical power to reliably detect multiple clusters, especially if the differences between them are subtle, is inherently low. Consequently, the consistent finding of "only one cluster" might reflect an inability of the analysis to resolve underlying heterogeneity due to insufficient power, rather than a definitive absence of distinct user types. Furthermore, the use of only one sex (males) and a single outbred strain (Sprague Dawley) significantly limits the potential for observing broader behavioral or biological diversity. This homogeneity is a critical issue because sex differences in response to psychostimulants are well-documented, and different genetic backgrounds (even among outbred strains from different suppliers or entirely different strains) can contribute to varied behavioral phenotypes. This restricted diversity inherently limits the generalizability of the findings and may contribute to the failure to detect distinct clusters that might be apparent in a more diverse animal population. Collectively, the small sample size and the homogeneity of the animal cohort (all male, single strain from one supplier) mean the "only one cluster" finding may very well be an artifact of these experimental limitations or specific to this particular sample, rather than a robust, generalizable conclusion about drug user typology. To strengthen the conclusions and improve generalizability, more animals should be included in these studies, ideally incorporating females and potentially animals from different vendors or strains. 2 - In the manuscript, the authors use a "normal mixtures clustering" and suggest its capability to find multiple groups. However, specific details regarding the algorithm’s parameterization, the statistical criteria used for determining the number of clusters (for example, the paper does not explicitly mention criteria like the Bayesian Information Criterion (BIC), common for mixture models, as the driver for consistently finding only one cluster), or sensitivity analyses related to these methodological choices are not provided within the methods section. Furthermore, the absence of cross-validation techniques or other robustness checks, which are also not mentioned in the methods, highlights a significant concern. Without such validation steps, it is difficult to ascertain whether the "only one cluster" finding is stable and not unduly influenced by the specific composition of this small sample or the chosen analytical parameters. Given that clustering is arguably the most important analysis in the paper, this lack of detailed information in the methods is a notable omission. 3 - The variables subjected to clustering include drug intake (cocaine self-administration responses at various doses, ranging from approximately 2 to 30 infusions as per Table 1), IUDR structural parameters (for example, "amplitude" in the range of 20–40, "mean" around 0.1–0.18, "width" around 0.08–0.13, and "AUC" around 5–9, as per Table 2), and behavioral economic parameters like Q0 (approximately 2–4.3) and alpha (a very small number, approximately 5×10^−4 to 1.3×10^−3, as per Table 2). These variables inherently possess vastly different numerical scales. The manuscript does not specify in its Methods section whether these variables were standardized before any of the clustering analyses were performed. This omission is concerning because, without appropriate scaling, variables with larger numerical ranges (like "amplitude" or raw intake counts) can disproportionately influence the underlying model fitting and distance measures in clustering algorithms. This could potentially bias the results, leading to a cluster dominated by variables with the largest variance and masking the true contribution of variables with smaller absolute values but significant theoretical importance, such as alpha. 4 - The "global clustering" approach, as described, combined observed responses at all cocaine doses with IUDR structural variables (amplitude, mean, width, AUC) and economic demand parameters (Q0, alpha). It is important to note that the IUDR parameters are derived from fitting Gaussian functions to the individual dose-response data (i.e., the observed responses at all cocaine doses), and the economic parameters (Q0, alpha) are subsequently derived from demand curves which are transformations of these same IUDR curves. This means many of the inputs into this specific global clustering algorithm are not independent. The derived parameters are mathematical transformations of the original intake data they are being clustered with. Such lack of independence could inadvertently lead to the original intake patterns (and their inherent structure or noise) being over-weighted in the clustering analysis, potentially obscuring more subtle relationships or reinforcing a particular structure based on redundant information. The rationale for this specific combined analysis requires more robust justification, particularly concerning how the statistical assumptions of the clustering method are met with non-independent variables or how potential issues of multicollinearity and variable weighting were addressed. 5 - The "normal mixtures clustering" employed in the manuscript inherently assumes that any underlying data clusters have Gaussian distribution. This is a notable assumption because if true behavioral or biological subgroups manifest with different, non-elliptical structures, or vary in density, such heterogeneity might be sub-optimally detected or missed entirely, a risk amplified by the study’s small sample size. To more comprehensively assess the data structure and bolster the robustness of the "one cluster" conclusion, exploring a range of alternative clustering algorithms would be beneficial. For instance, hierarchical clustering could provide a valuable exploratory overview, visually revealing potential nested groupings or outliers without presupposing the number of clusters. Additionally, density-based approaches like DBSCAN are designed to identify clusters of arbitrary shapes and can be more robust to noise, offering a different perspective if the data does not conform to clear, centrally condensed groups. Minor Comments: Line 85: There’s an extra period in "limitation." Line 110 and Line 114: "vertical" is used (for example, "shifted vertical and rightward"). It might be more grammatically conventional to use "vertically" (for example, "shifted vertically and rightward"). Line 574: "every dose of elf-administered cocaine" should be "self-administered." ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 1 |
|
Differences in drug intake levels (high versus low takers) do not necessarily imply distinct drug user types: insights from a new cluster-based model PONE-D-24-58025R1 Dear Dr. Job, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support . If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Rita Fuchs Academic Editor PLOS One Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
|
PONE-D-24-58025R1 PLOS One Dear Dr. Job, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS One. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Rita Fuchs Academic Editor PLOS One |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .