Peer Review History
| Original SubmissionAugust 4, 2025 |
|---|
|
PONE-D-25-41897A large-scale data set of aircraft interaction networks.PLOS ONE Dear Dr. López-Martín, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ACADEMIC EDITOR: In light of the reviewers’ evaluations, I am requesting a major revision. The reviewers’ suggestions are constructive and intended to strengthen methodological transparency, data validation, and demonstration of the dataset’s utility. Addressing these points will greatly improve the manuscript’s clarity, reproducibility, and impact. I invite you to revise the manuscript accordingly and provide a detailed response letter outlining how each comment has been addressed. Please submit your revised manuscript by Oct 26 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Absalom El-Shamir Ezugwu, Ph.D Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please note that PLOS One has specific guidelines on code sharing for submissions in which author-generated code underpins the findings in the manuscript. In these cases, we expect all author-generated code to be made available without restrictions upon publication of the work. Please review our guidelines at https://journals.plos.org/plosone/s/materials-and-software-sharing#loc-sharing-code and ensure that your code is shared in a way that follows best practice and facilitates reproducibility and reuse. 3. We note that the grant information you provided in the ‘Funding Information’ and ‘Financial Disclosure’ sections do not match. When you resubmit, please ensure that you provide the correct grant numbers for the awards you received for your study in the ‘Funding Information’ section. 4. Thank you for stating in your Funding Statement: [This project has received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No 851255). This work was partially supported by the María de Maeztu project CEX2021-001164-M funded by the MICIU/AEI/10.13039/501100011033. R. L.-M. acknowledges support from the Spanish Ministry of Science, Innovation and Universities through the grant FPU22/03765.]. Please provide an amended statement that declares *all* the funding or sources of support (whether external or internal to your organization) received during this study, as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now. Please also include the statement “There was no additional external funding received for this study.” in your updated Funding Statement. Please include your amended Funding Statement within your cover letter. We will change the online submission form on your behalf. 5.Thank you for stating the following financial disclosure: [This project has received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No 851255). This work was partially supported by the María de Maeztu project CEX2021-001164-M funded by the MICIU/AEI/10.13039/501100011033. R. L.-M. acknowledges support from the Spanish Ministry of Science, Innovation and Universities through the grant FPU22/03765.]. Please state what role the funders took in the study. If the funders had no role, please state: ""The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript."" If this statement is not correct you must amend it as needed. Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf. 6. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly Reviewer #3: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: N/A Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No Reviewer #3: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The paper introduces a unique, large-scale dataset of aircraft interaction networks spanning multiple years (2015–2021) and across the entire European airspace, which is unprecedented in scope. Though there are few points authors should address: 1) While the dataset’s utility is clear, the introduction could better highlight specific gaps in existing resources that this dataset uniquely fills. 2) Why the data is restricted to only four months? 3) Whether the restriction to only four months per year won’t bias results. The implications of this sampling choice could be discussed more explicitly. 4) Proper qualitative, quantitative validation of the data should be provided including some visual presentation. 5) The paper could include a brief demonstration of a real-world analysis workflow such as building a temporal network analysis from raw CSVs. Reviewer #2: General Summary of the Paper This manuscript presents an extensive dataset comprising 1,708 animated networks representing daily interactions between aircraft over European airspace spanning from 2015 to 2021. The dataset is generated from processing trajectory data to capture pairwise aircraft interactions, thereby enabling large-scale analysis of air traffic dynamics. The authors aim to provide a publicly accessible resource to facilitate research in complex networks, air traffic management, and related fields. They also discuss potential applications of this dataset in model validation, network analysis, and verification of algorithmic approaches such as community detection, link prediction, and network dismantling. Strengths i. Novelty and Scale: The dataset’s breadth, covering multiple years and large spatial scales, fills a significant gap in air traffic research resources, supporting macro-scale analyses. ii. Comprehensiveness: The detailed multilevel network representations include temporal, spatial, and topological information, enabling diverse applications. iii. Open Data and Reproducibility: The authors make the dataset openly available, facilitating transparency, reproducibility, and further research utilization. iv. Potential for Diverse Applications: The discussion outlines numerous research avenues, including validation of complex network algorithms, workload assessment, and air traffic system resilience. Weaknesses and Major Concerns i. Methodological Clarity and Data Processing Details: The manuscript would greatly benefit from a clearer, more detailed description of the data processing pipeline specifically, how trajectories are converted into interaction networks, threshold criteria for defining interactions, and any preprocessing steps. Inclusion of flowcharts, pseudocode, or detailed algorithms would enhance reproducibility. ii. Validation and Quality Assessment: While extensive, the paper lacks a rigorous validation of the interaction data for instance, an analysis of false positives/negatives in interaction detection or comparison with ground-truth data (if available). Clarifying the accuracy of these interaction specifications is necessary. iii. Sensitivity Analysis: There is limited discussion on how choices such as interaction thresholds, spatial/temporal resolutions, or filtering criteria impact the network properties. Sensitivity analyses would strengthen confidence in the robustness of the dataset. iv. Computational Cost and Scalability: Addressing the computational efficiency of data processing, as well as potential limitations in scaling or applying the approach to larger datasets, is crucial for understanding practical usability. v. Application Demonstration: While the paper discusses potential applications, incorporating a preliminary case study or example analysis (e.g., comparison of network topology during different traffic conditions) would exemplify the dataset’s utility. Minor Comments i. Clarify whether the trajectory data filtering employs any smoothing or noise reduction techniques. ii. Provide more details on the metadata associated with each interaction network, especially regarding the airspace status layers. iii. Consistently refer to the dataset’s spatial and temporal resolution parameters used throughout. iv. Enhance figures with visual representations of the network structure evolution over selected periods. Recommendations Major Revision: There is need to provide substantial improvements in methodological transparency particularly detailed descriptions of data processing algorithms, validation measures, and sensitivity analyses. Including a case demonstration to showcase the dataset’s analytical potential would further amplify the manuscript’s impact. Addressing these aspects will enhance reproducibility, clarity, and community adoption of this valuable resource. Reviewer #3: This paper presents an unprecedentedly large dataset of aircraft interaction networks in European airspace. The dataset consists of 1708 daily networks of flight interactions between 2015 and 2021 and has been processed and validated with high accuracy. These data can be used for air traffic dynamics analysis, testing of complex network algorithms, and large-scale epidemiological studies. The paper is excellent in terms of scale, accuracy, and accessibility, and is highly suitable for publication. It is suggested that the practical applications of this dataset in air traffic management be briefly mentioned in the introduction section. It is better to include a quantitative comparison with similar datasets (e.g. in terms of size, complexity, or spatio-temporal coverage) in the results section. Adding metrics such as spatial accuracy, error rate, or compliance with operational data can increase the validity of the dataset. Better insight into the network structure can be provided by analyzing features such as Modularity, Centrality, or Resilience. It is better to clearly state limitations such as the exclusion of short flights or the impact of interpolation on accuracy. Adding a small case study shows how this data can be used in practice. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
|
A large-scale data set of aircraft interaction networks. PONE-D-25-41897R1 Dear Dr. López-Martín, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Absalom El-Shamir Ezugwu, Ph.D Academic Editor PLOS ONE Additional Editor Comments (optional): All concerns raised by the reviewers, who are experts in the field, have been carefully and satisfactorily addressed by the authors. I therefore recommend that the paper be accepted in its current form. However, the authors are advised to carefully proofread the final version to ensure it is free from grammatical and typographical errors. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #2: All comments have been addressed Reviewer #3: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #2: Yes Reviewer #3: (No Response) ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #2: Yes Reviewer #3: (No Response) ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #2: Yes Reviewer #3: (No Response) ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #2: Yes Reviewer #3: (No Response) ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #2: Dear Authors, Thank you for your valuable response and contributions. All comments have been addressed Reviewer #3: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #2: No Reviewer #3: No ********** |
| Formally Accepted |
|
PONE-D-25-41897R1 PLOS ONE Dear Dr. López-Martín, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Professor Absalom El-Shamir Ezugwu Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .