Peer Review History
| Original SubmissionJune 11, 2025 |
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Dear Dr. Michal, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Oct 20 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
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If your ethics statement is written in any section besides the Methods, please move it to the Methods section and delete it from any other section. Please ensure that your ethics statement is included in your manuscript, as the ethics statement entered into the online submission form will not be published alongside your manuscript.-->--> -->-->5. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. ?> [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: No Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: No Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: No Reviewer #2: Yes ********** Reviewer #1: The authors Michal et al describe in their publication the observation how the DNase activity and ecDNA in plasma of patients with Testicular Germ Cell Tumors correlate with the clinical outcome. Furthermore, they investigated in a mouse model if a DNase application in combination with cisplatin treatment leads to a better outcome. This study is in general of interest, as it combines clinical findings and based on this new treatment approaches. However, the study needs some improvements as well as some more descriptions in the material and methods part and a clear structure of the manuscript and the figures. Major: The clear red line of the story is lost, because of the structure of the results part. A lot of data are presented in a very confusing way. For example in line 445 the header is “Comparison of the ecDNA in GCTs patients to HDs”, however presented are more or less all measured values like NE and MPO. The samples for the study were collected over a long period and analysed several years later (2023). Even I understand that such studies are challenging in collecting enough samples, did the authors prove if the storage time influenced the data outcome and statically adjusted the results? Especially DNase activity can even if samples are stored at -80°C over time loose activity. In addition, how long was the storage time of the healthy controls? Could this explain the differences between both groups? The authors need to prove this influence by statistic analysis. The study cohort contains 117 patients. Why did the authors only use 19 controls? This is less than 20% of the cohort. In addition, how is “healthy” defined? Non tumor patient? Figure 1: It is unclear why the authors used an axis until 150 months even none of the data are ending in 150 month. In addition, some of the graphs end at 100 month others before. Was the observation time-frame of the patients not the same. Why are there missing data points? Furthermore, it is unclear how the authors defined high and low values and therefore categorized the data. Furthermore, it is unclear how many patients belong now to which category? This should be clarified and the figure 1 needs to be presented as one clear figure. It would be helpful to show a regression line of DNase activity versus DNA to present the described part as a figure. Table 2: Why is not always the n of HD 19 in all measurements? Why is the total number (n) of GCT not always 117? And why is the number of patients in the different categories varying by measured parameters? The stage of the GCT should be always the same, or? In addition, the table header is again incorrect. The authors need to check all headers and the following content. Table 4: How can the n number between the four determined parameters differ in regard of high and low DNase? Either they are classified based on a mean as above and below and should never change or something is not correct presented. How do the authors explain this? In addition, none of this values result in 117 patients. Why are some patients excluded in this assay? Can the authors exclude that this effect in the assays is not the results of other parameters? How is the healthy donor group reacting in these assays? This would be a useful experiment. The authors describe that they used plasma from a biobank, how were the PBMC isolated for the comet assay from biobank samples? Animal Experiment: The authors need to clarify how many animals per group / per experiment were used. It seems that it were more than one experiment? The authors describe a total of 16 mice in one experiment, however in Fig 3c in each group 8 points = 8 mice exist. This is confusing. How many mice are used in experiment 1 and 2? Fig 4: Scale bars are missing. What can be seen in this pictures? Why are only pictures of with and without DNase are shown. The results text is not helpful. How was the result in combination of DNase and CDDP? Is the tumor volume in Fig 4D statistically different? In line 514 the authors describe data not shown. Nowadays all data should be shown in a publication. Line 541 ff: The authors described they used plasma samples from a biobank. From where are the results coming of the blood cell counts? The blood count data should be shown. And in addition the data named in line 550 (data not shown). In routine blood diagnostic cell types like CD1c positive cells are not determined. The supplemental data, especially in the graphs, needs to be revised, as they are now difficult to see, and everything should be aligned in the same direction for the reader. Which figure is shown on page 12? Numbering is missing. Figure legends should also be included under the Figure and not in the manuscript results included. NETs: The authors measured NE and MPO as NET markers in the patients. However, both could results from neutrophils undergoing apoptosis. Why did the authors not measure other NET markers, eg. H3cit, or MPO/Histone complexes? In addition, DNase can degrade NETs and NETs are described to be involved in metastasis processes. A NET quantification in the mice would be of high relevance to better understand the pathomechanism how DNase acts. In addition the discussion lacks the NET part and the Minor: Not all abbreviations used in the abstract are explained e.g. ncDNA, PFS and OS, which makes it complicated to understand everything. This needs to be explained. The authors should proof read the whole manuscript for DNase and use always the correct writing, instead of switching to DNAse. Reviewer #2: The study addresses a clinical need to gain new biomarkers and therapeutic strategies for refractory testicular germ cell tumors. It is the first study to correlate plasma DNase activity with survival outcomes in TGCT patients. Translational approach combining clinical cohort analysis and preclinical in vitro/in vivo models is valuable. The study includes relatively large patient cohort, comprehensive biomarker assessment and rigorous methodology. It is written in a clear way with no major drawbacks. Limitations: Control group (n=19) is quite small compared to the patient cohort, limiting statistical robustness. Survival data are promising but relatively short follow-up may underestimate long-term effects. Impact beyond TGCTs (generalizability to other cancers) is implied but not tested here. Recommendation The dichotomization by mean value of ecDNA/DNase may oversimplify data distribution; more refined cut-offs would possibly improve prognostic accuracy. The discussion should emphasize the preliminary nature of these preclinical data. The limitations (small control group, single xenograft model, relatively short follow-up) should be more explicitly acknowledged. ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: Yes: Nicole de Buhr Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 1 |
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<p>Low Level of Plasma DNase Is Associated with Worse Clinical Outcome in Testicular Germ Cell Tumor Patients and Exogeneous DNase I Improves (Leverages) Cisplatin Treatment Efficacy PONE-D-25-29918R1 Dear Dr. Michal, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support . If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Milad Khorasani, PhD Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author Reviewer #2: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions??> Reviewer #2: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #2: Yes Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #2: Yes Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #2: Yes Reviewer #3: Yes ********** Reviewer #2: All comments were addressed. The authors explained all uncertainties. Manuscript is suitable for publication. Reviewer #3: As a newly invited reviewer for the revised version of this manuscript, I have carefully examined the authors’ responses to the previous reviewers’ comments as well as the revised manuscript itself. It is evident that the authors have made substantial efforts to address all the concerns raised during the initial review. The revised version demonstrates significant improvements in terms of methodological clarity, data presentation, and discussion depth. The study provides solid evidence supporting the association between plasma DNase levels and clinical outcomes in testicular germ cell tumor patients. The additional experimental data and improved statistical analyses have strengthened the conclusions. Moreover, the preclinical data on the synergistic effect of DNase I with cisplatin are compelling and provide translational value. The manuscript is clearly written, well-structured, and scientifically sound. The authors’ revisions have successfully resolved the prior issues and enhanced the overall quality of the paper. Therefore, I find the revised version acceptable for publication in its current form. ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #2: No Reviewer #3: No ********** |
| Formally Accepted |
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PONE-D-25-29918R1 PLOS ONE Dear Dr. Michal, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Milad Khorasani Academic Editor PLOS ONE |
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