Peer Review History
| Original SubmissionJanuary 15, 2025 |
|---|
|
Dear Dr. Ma, ACADEMIC EDITOR:
Please submit your revised manuscript by the Aug 21 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Cavin Epie Bekolo, MD, MSc Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We note that you have indicated that there are restrictions to data sharing for this study. For studies involving human research participant data or other sensitive data, we encourage authors to share de-identified or anonymized data. However, when data cannot be publicly shared for ethical reasons, we allow authors to make their data sets available upon request. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. Before we proceed with your manuscript, please address the following prompts: a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., a Research Ethics Committee or Institutional Review Board, etc.). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. Please see http://www.bmj.com/content/340/bmj.c181.long for guidelines on how to de-identify and prepare clinical data for publication. For a list of recommended repositories, please see https://journals.plos.org/plosone/s/recommended-repositories. You also have the option of uploading the data as Supporting Information files, but we would recommend depositing data directly to a data repository if possible. Please update your Data Availability statement in the submission form accordingly. 3. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: Yes ********** Reviewer #1: Dear Dr. Xinyu Ma and colleagues, Your manuscript “Hepatotoxicity risk factors in HIV-infected MSM with HBV/HCV coinfections: a cohort study in northwest China” offers important insights into the prevalence and impact of HBV and HCV coinfections on ART-related hepatotoxicity in a large MSM cohort. The study is methodologically sound with comprehensive data collection and appropriate analyses. After careful review, I suggest addressing the following minor issues to improve clarity and completeness: Abstract and Title 1. The title and abstract accurately reflect the scope and main findings. However, consider briefly specifying the retrospective cohort design and inclusion criteria in the abstract methods section for clarity. Expanding slightly on the clinical relevance of the findings in the conclusion would strengthen the abstract. Introduction 2. The introduction provides a solid background on HIV, HBV, and HCV epidemiology and coinfection risks in MSM. To further contextualize the study, a concise statement discussing gaps in hepatotoxicity data specifically among Chinese MSM on ART would enhance the rationale. Materials and Methods 3. The retrospective cohort design and inclusion criteria are adequately described. Clarify details on data completeness and handling of missing data, especially for follow-up laboratory results. Also, please specify whether alcohol use or other hepatotoxic exposures were assessed or controlled for, as these could confound outcomes. Results 4. Results are clearly presented with appropriate use of Kaplan-Meier and Cox regression analyses. The differentiation of hepatotoxicity risks by coinfection type and severity is valuable. Including a table summarizing multivariate hazard ratios for major predictors would improve accessibility. Discussion 5. The discussion thoughtfully interprets findings in light of existing literature, emphasizing differential hepatotoxicity risks and potential mechanisms. Expanding the commentary on the unexpected protective association of lower hemoglobin and hepatotoxicity with possible explanations would add depth. Conclusion 6. Conclusions are well supported by data emphasizing the importance of early HBV/HCV screening and liver function monitoring in MSM initiating ART. Figures and Tables 7. Figures and tables are well formatted and informative. Ensure axis labels and legends are fully explanatory for international readers. Overall Concerns 8. No scientific or ethical concerns identified. The study shows strong adherence to ethical standards with anonymity and approved protocols. Competing Interests 9. Disclosures are complete and present no conflicts impacting study validity. English Language Editing 10. The manuscript is written in clear, professional English. Minor stylistic polishing could enhance readability without substantive changes. Thank you for your important contribution. I look forward to your revised manuscript addressing these minor comments. Best regards, I Ketut Agus Somia Reviewer Reviewer #2: This manuscript assesses hepatotoxicity risk factors in HIV-infected MSM with HBV/HCV coinfections in northwest China. The study is thorough, employs suitable statistical methods, and the results support the conclusions. The findings provide valuable evidence for clinicians to optimise ART management in coinfected patients. Although comprehensive, the study does not fully consider factors such as alcohol consumption or medication adherence, which could influence liver outcomes. Analysis for triple infections (e.g., HIV/HBV/HCV coinfection) was excluded. Authors should consider elaborating on the limitations, particularly concerning unmeasured confounders such as alcohol consumption, use of traditional medicine, or other hepatotoxic exposures that might influence liver outcomes. Some longer sentences might be better divided for clarity, especially in the Discussion section. Could the authors consider incorporating visual summaries, such as a flowchart or simplified diagram of risk factors? I recommend providing more practical guidance for clinicians, such as recommending the frequency of liver function tests or screening intervals, to make the findings more actionable. ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: Yes: I Ketut Agus Somia Reviewer #2: Yes: Lawrence Annison ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org
|
| Revision 1 |
|
<p>Hepatotoxicity risk factors in HIV-infected MSM with HBV/HCV coinfections: a cohort study in Northwestern China PONE-D-25-02017R1 Dear Dr. Xinyu Ma, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support . If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Cavin Epie Bekolo, MD, MSc, PhD Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewer #1: Reviewer #2: Reviewers' comments: Reviewer's Responses to Questions Comments to the Author Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions??> Reviewer #1: Yes Reviewer #2: (No Response) ********** 3. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #2: (No Response) ********** 4. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes Reviewer #2: (No Response) ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: (No Response) ********** Reviewer #1: Commentary to the Authors Dear Authors, Thank you for a comprehensive and clinically important study. Your revisions have markedly improved clarity around the incidence definition, endpoint grading, missing data handling, unmeasured confounding, and figure/table legends. Only minor refinements remain, as detailed below. *Abstract and Title* The title and abstract appropriately reflect the study’s key elements. The abstract clearly states the retrospective cohort design, inclusion criteria, CTCAE‑based hepatotoxicity definition, and the main adjusted hazard ratios, and it highlights the clinical implications for liver monitoring in coinfected MSM receiving ART. The strengthened conclusion effectively emphasizes clinical urgency. Introduction The introduction now provides adequate background and rationale. The added statement about the limited data on ART‑related hepatotoxicity among Chinese MSM—particularly in Northwestern China—improves contextualization and clarifies the research gap. Materials and Methods Methods are clearly described and reproducible. The rationale for reporting incidence per 1,000 person‑years—given variable follow‑up and censoring—is appropriate, and person‑time calculations are explained. Missing data handling is transparent: cases with missing baseline or follow‑up AST/ALT were excluded, no imputation was performed, and analyses used available‑case data. You also correctly note that alcohol use and other hepatotoxic exposures were not systematically collected and therefore could not be controlled for; this is properly framed as a limitation. Minor consistency issue: Table 3 labels rates as “standardized incidence rates” while the Methods refer to incidence rates per 1,000 person‑years. Please harmonize the terminology or briefly define any standardization applied to avoid confusion. Results Results are relevant and plausible. Multivariable hazard ratios demonstrate increased risk of any‑grade hepatotoxicity in both HIV/HBV and HIV/HCV coinfections, and a substantially higher risk of grade ≥3 hepatotoxicity in HIV/HBV infection, consistent with the Kaplan–Meier and Cox analyses. Please include a brief note on potential residual bias and how covariate adjustment in the Cox models mitigates confounding, while continuing to acknowledge remaining unmeasured hepatotoxic exposures (e.g., alcohol, hepatotoxic medications). Discussion The Discussion is well aligned with the findings and existing literature. The different risk patterns observed for HIV/HBV versus HIV/HCV coinfections are thoughtfully explored, with plausible mechanisms and practical implications—particularly the recommendation for intensified monitoring during the first year of ART. The expanded interpretation around lower hemoglobin and a possible HIF–CYP mechanism adds depth and suggests useful directions for future research. Conclusion Conclusions are supported by the data and appropriately emphasize early HBV/HCV screening, timely ART initiation, and tailored liver‑function monitoring based on baseline risk to reduce treatment interruptions and improve outcomes. Figures and Tables Figures and tables are clear and legible. Ensure legends remain fully explanatory for international readers. Overall Concerns No scientific or ethical concerns were identified. Declared competing interests appear appropriate and do not seem to bias the study. No major English language edits are necessary. Thank you for your consideration. Best regards, I Ketut Agus Somia udayana University Reviewer #2: (No Response) ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: Yes: I Ketut Agus Somia Reviewer #2: Yes: LAWRENCE ANNISON ********** |
| Formally Accepted |
|
PONE-D-25-02017R1 PLOS ONE Dear Dr. Ma, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Cavin Epie Bekolo Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .