Peer Review History
| Original SubmissionJune 4, 2025 |
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Dear Dr. Sato, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Sep 05 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
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This will take you to the ORCID site and allow you to create a new iD or authenticate a pre-existing iD in Editorial Manager. 4. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. 5. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #2: N/A Reviewer #3: N/A ********** 3. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes Reviewer #2: No Reviewer #3: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** Reviewer #1: This study reports on the development of a novel methodology for conjugation of reporter molecules to antibody fragments under mild conditions, which is more straightforward compared to the previously developed approaches. The study is well performed and the manuscript is well written. I only have minor questions: In Figure 1, n= should be specified to what was used in this study. Table 1, was the measurement only performed once? What is n= and SD=? SI page 5 “LC-MS/MS analysis of tryptic digest of Fab. For LC-MS/MS analysis, 2 μL of 1 M Tris-HCl solution (pH 8.5) was added to 20 μL of 0.25 mg/mL Fab solution in milli-Q H2O containing 8 M urea (grade, maker).” - 8 M urea (grade, maker) should be added. Reviewer #2: This paper describes the method for the preparation of Ab fragment-reporter conjugate by the two-step reaction: first step is the introduction of bifunctional linker to the Q tag attached to Ab via side chain amide bond. Subsequently, the thiol group of the linker was reacted with maleimide linked reporter. The advantage of this method is that the thiol group can be made free during the reaction with Ab, which realizes the direct coupling with the reporter without the deprotection step. Conceptually, the paper represents no surprising idea, as the use of Q-tag and transglutaminase has already reported and it is natural to think that the protection of thiol can be omitted in this reaction. However, the author successfully proved that the reaction indeed proceeded as suggested using several model proteins and this reviewer thinks that the paper may be suitable for publication with the following modifications. 1. SH-PEG-NH2 should be HS-PEG-NH2. In addition, in Fig. 1 PEG linker should be NH2....SH. 2. In page 3, line 8, making it difficult to control the stoichiometry-> The compound prepared in this paper is also heterogeneous, although at reporter part which does not affect the binding affinity. Still, it would be difficult to precisely control the stoichiometry to obtain the target conjugates. It is better to revise the expression. 3. Page 5, line 6: speculating that the steric hindrance... -> I do not understand the meaning. Please revise. 4. Page 8, line 5, page 13 line 3 from the bottom: likely owing to conjugate loss -> Please add the brief result of cation exchange data. 5. There is no experimental procedure for Table 1. Please add the errors of the KD value. 6. There are not MS data for the final conjugates. Please add them. 7. Do the authors intend to use this conjugate as a trimer? If so, it is better to optimize the yield of the trimer, as the purification by SEC is always necessary, which is not so efficient. Reviewer #3: The authors have described a two-step chemoenzymatic method to generate antibody conjugate involving transglutaminase followed by a thio-maleimide Michael addition reaction. The key of this study is the demonstration of a long-chain thiol-PEG-amine (SH-PEG) linker is relatively stable than the short-chain thiol-PEG-amine during the transglutaminase mediated reactions, thus, to avoid the traditional thio group protection-deprotections procedure. Overall, the study provides a useful method for facilitating thio-maleimide Michael addition approach in antibody conjugate. However, several improvements should be made for before publication. 1. In Figure 2, the monomer is detected exclusively as a singly‑charged ion, while the dimer appears only as a doubly‑charged species. Although the dimer signal is minor (~2%, as stated by the authors), it would be more informative to include the mono‑charged form of the dimer as well, if it is present. This would help validate the assignment and improve the completeness of the mass spectrometric analysis. 2. Page 13, line 7, Fabp24 should not be purified by Protein G chromatography, unless it is engineered to be part of a fusion protein that binds to Protein G, which is not typical. It maybe a reason why the yield of Alexa488-PEG2k-Fabp24 is low (33%). Instead, Protein L should be applied. 3. Page 15, line 10: SPR spectra should be provided. ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: No Reviewer #2: No Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Efficient Two-Step Chemoenzymatic Conjugation of Antibody Fragments with Reporter Compounds by a Specific thiol-PEG-amine Linker, HS-PEG-NH2 PONE-D-25-30206R1 Dear Dr. Sato, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support . If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Rui Tada, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewer #1: Reviewer #2: Reviewer #3: Reviewers' comments: Reviewer's Responses to Questions Comments to the Author Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions??> Reviewer #1: (No Response) Reviewer #2: (No Response) Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: (No Response) Reviewer #2: (No Response) Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: (No Response) Reviewer #2: (No Response) Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: (No Response) Reviewer #2: (No Response) Reviewer #3: Yes ********** Reviewer #1: (No Response) Reviewer #2: (No Response) Reviewer #3: The authors have properly responded to my comments. I recommend the acceptance of the current manuscript. ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: No Reviewer #2: No Reviewer #3: No ********** |
| Formally Accepted |
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PONE-D-25-30206R1 PLOS ONE Dear Dr. Sato, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Rui Tada Academic Editor PLOS ONE |
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