Peer Review History
| Original SubmissionFebruary 5, 2025 |
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Dear Dr. tu, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Aug 03 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Eyüp Serhat Çalık Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We note that your Data Availability Statement is currently as follows: “All relevant data are within the manuscript and its Supporting Information files” Please confirm at this time whether or not your submission contains all raw data required to replicate the results of your study. Authors must share the “minimal data set” for their submission. PLOS defines the minimal data set to consist of the data required to replicate all study findings reported in the article, as well as related metadata and methods (https://journals.plos.org/plosone/s/data-availability#loc-minimal-data-set-definition). For example, authors should submit the following data: - The values behind the means, standard deviations and other measures reported; - The values used to build graphs; - The points extracted from images for analysis. Authors do not need to submit their entire data set if only a portion of the data was used in the reported study. If your submission does not contain these data, please either upload them as Supporting Information files or deposit them to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of recommended repositories, please see https://journals.plos.org/plosone/s/recommended-repositories. If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially sensitive information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. If data are owned by a third party, please indicate how others may request data access. 3. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Additional Editor Comments: I congratulate the authors on this important work. The prognostic value of anion gap in patients with pulmonary edema has been well analyzed using the MIMIC-4 database. The manuscript has been reviewed by two reviewers, and their comments are provided below. Please address their comments appropriately and make the necessary revisions to your manuscript. We look forward to receiving your revised manuscript. Best success. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #2: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: Yes ********** Reviewer #1: This is a well-conducted and technically sound retrospective cohort study exploring the prognostic role of anion gap levels in patients with acute pulmonary edema using the MIMIC-IV database. The methodology is appropriate and clearly described, the statistical analyses are rigorous (including multivariable Cox regression, restricted cubic spline, Kaplan-Meier survival analysis, and subgroup interaction testing), and the conclusions are well-supported by the presented data. Strengths of the study include: Use of a large, publicly available and high-quality ICU dataset (MIMIC-IV). Clear stratification of patients into quartiles of anion gap and appropriate adjustments for confounders. Subgroup analysis exploring interactions with age and renal disease, which adds valuable clinical insight. Suggestions for Improvement: Language and Grammar: While the manuscript is overall intelligible and written in acceptable English, several minor grammatical and typographical issues persist. A language polishing service or editorial revision may enhance clarity and flow. Figures and Tables: Ensure that all figures (e.g., Kaplan-Meier curves, RCS curves, forest plots) are of high resolution and clearly labeled for publication quality. Ethics and Data Availability: While the MIMIC-IV database is exempt from IRB due to its anonymized nature, it may still benefit clarity to explicitly cite the IRB approval from PhysioNet and mention the CITI certification more formally within the Methods. Limitations: The limitations are well addressed. However, a brief mention of potential misclassification bias in coding diagnoses (from EHR-based databases) would further strengthen the discussion. Clinical Implications: Consider slightly expanding the clinical implications in the conclusion—for example, how the anion gap could be integrated into early risk stratification or ICU scoring systems. Overall, this study contributes meaningfully to critical care and cardiopulmonary literature by identifying a simple, routinely measured biochemical marker (anion gap) as a significant predictor of short-term mortality in acute pulmonary edema. After minor editorial and stylistic revisions, it should be suitable for publication. Reviewer #2: I have read this manuscript and I haver some questions. In the introduction, the authors do not tell me why this topic is important. Many conditions cause an anion gap. why should we be concerned about an elevated anion gap in a patient with pulmonary edema. It is not until the discussion that the authors tell us that prior studies have shown an association and that the association may be a marker of significant systemic inflammatory response. This information should be in the introduction. The authors stated that the patients were diagnosed with acute pulmonary edema. What was the diagnostic criteria and was is the same for all of the patients. I understand that this is a retrospective cohort so there may not be a way to get this information. If this is the case, this should be stated in the discussion. Lastly, the authors use the MIMIC-IV database. I would like for the authors to describe this database. Why did they choose this database. What is the purpose of this data base. Where do the patients come from? ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: Yes: Abdullah Abbas Saleh Al-Murad Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org |
| Revision 1 |
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Dear Dr. tu, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Sep 18 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Eyüp Serhat Çalık Academic Editor PLOS ONE Journal Requirements: 1. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. 2. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Additional Editor Comments: I would like to thank the authors for their appropriate responses to the reviewers' comments and for the revisions they made to their manuscripts. Additional comments requested for your manuscript are listed below. We look forward to receiving your revised manuscript with point-by-point responses as soon as possible. Best of luck. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author Reviewer #1: All comments have been addressed Reviewer #3: (No Response) Reviewer #4: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions??> Reviewer #1: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #3: Yes Reviewer #4: Yes ********** Reviewer #1: The authors have satisfactorily addressed all previous reviewer comments, resulting in a significantly improved manuscript. The following points were particularly well-resolved: Language and Grammar: The manuscript has been polished, with improved clarity and fluency throughout. Minor grammatical and stylistic edits have strengthened readability. Figures and Tables: All figures (including Kaplan-Meier, forest plots, and spline curves) have been updated with high resolution and appropriate labeling. The quality is now publication-ready. Ethical Approval and Data Statement: The revised Methods now appropriately cite the PhysioNet IRB approval and include a formal mention of the CITI certification, enhancing transparency regarding ethical compliance. Limitations: The limitations section now acknowledges the potential for misclassification bias in ICD-coded diagnoses derived from the MIMIC-IV database, which strengthens the manuscript’s integrity. Clinical Implications: The conclusion has been expanded to outline how the anion gap could be integrated into early risk stratification or ICU scoring systems—providing a stronger bridge between data and bedside practice. Introduction: The rationale for examining anion gap in pulmonary edema has been added earlier in the Introduction, improving logical flow and contextual framing. Database Justification: The authors have provided a clear description of the MIMIC-IV database, including its origin, population source, and rationale for use, satisfying all concerns about data selection and generalizability. The manuscript is now scientifically sound, clinically relevant, and ready for publication in PLOS ONE. Congratulations to the authors on their comprehensive and thoughtful revision. Reviewer #3: General comments This study addresses an important and clinically relevant question by evaluating the prognostic value of a simple, routinely available biomarker the anion gap in patients with acute pulmonary edema. The use of robust statistical methods, including Cox regression, restricted cubic splines (RCS), and Kaplan Meier analysis, strengthens the methodological rigor. The conclusion is practical and clearly linked to the study findings, offering suggestions that could translate into better bedside risk stratification. Specific comments Methods section Patient identification: It would improve clarity to explain exactly how patients with acute pulmonary edema were identified in the database such as through ICD codes, clinician-entered diagnoses, or the first charted diagnosis. Timing: Please clarify whether the anion gap value used was the very first measurement within the first 24 hours of admission or an average across several measurements. Missing data: It would help readers to know how missing values were handled whether patients with missing key variables were excluded, or if imputation methods were applied. Covariates: Consider listing all variables included in the multivariate Cox regression to show transparency and reproducibility. Sample size: Even in retrospective analyses, a note on whether a sample size calculation or justification for the final sample size was done would strengthen the methodological robustness. Grouping: Explain why quartiles were chosen instead of using clinically meaningful cut-offs that might reflect metabolic acidosis severity. RCS: Specify the number and placement of knots used in the restricted cubic spline analysis, or mention if default settings were applied. Subgroup analyses: It would add clarity to list all subgroups examined and explain briefly how interaction terms were tested. References: Consider adding references for the MIMIC-IV database and the statistical software packages used to help readers trace the data source and analytical tools. Discussion It would strengthen the discussion to mention whether the association between anion gap and mortality remained after adjusting for comorbidities or disease severity scores like SOFA or SAPS II, if available. Highlight how this study adds new evidence or differs from previous studies on anion gap and ICU mortality (e.g., by focusing specifically on acute pulmonary edema patients). The suggestion of incorporating anion gap into early warning or risk scoring systems is valuable; consider naming widely used scores like APACHE II or SOFA and discussing what incremental value the anion gap might add. You might also discuss whether repeated measurement of anion gap over time (i.e., dynamic monitoring) could provide more prognostic information than a single admission value. Limitations It would add depth to acknowledge residual confounding from unmeasured factors like lactate or albumin, which directly affect the anion gap. Consider adding a forward-looking statement proposing future prospective studies or multicenter validation to confirm these findings and assess generalizability. Reviewer #4: 1. Mention limitations in methods and discussion that the study relies on diagnosis based on the codes and not a standardized clinical/radiological definition. 2. There is no adjustment for comprehensive illness severity scores (e.g., SOFA, SAPS II), which may confound the AG-mortality association. Recommendation: If feasible, include an illness severity score in a sensitivity analysis. If not, acknowledge this limitation explicitly. 3. Discussion section: Discuss how AG might be pragmatically used in clinical practice. 4. Figures: Make sure Axis labels and legends are self explanatory ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: Yes: Abdullah Abbas Saleh Al-Murad Reviewer #3: Yes: Natan Mulubrhan Alemseged Reviewer #4: Yes: Ankit Agarwal ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org |
| Revision 2 |
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Dear Dr. tu, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Oct 22 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Eyüp Serhat Çalık Academic Editor PLOS ONE Journal Requirements: 1. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. 2. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Additional Editor Comments: Minor corrections have been requested for your manuscript. I hope you will re-upload it with the corrections soon. Best wishes. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author Reviewer #3: All comments have been addressed Reviewer #4: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions??> Reviewer #3: Yes Reviewer #4: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #3: Yes Reviewer #4: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #3: Yes Reviewer #4: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #3: Yes Reviewer #4: Yes ********** Reviewer #3: Dear authors, thank you for taking time to correct the given feedbacks and I have no further comments. Reviewer #4: In grouping by anion gap: Quartile cut-offs appear to be arbitrary. A brief rationale or reference for these ranges should be added. In results: Consider summarizing key differences between anion gap quartiles in text rather than listing every lab values. Include a sentence comparing anion gap with other standard prognostic markers (e.g., lactate, BNP, or SOFA) to contextualize incremental value. ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #3: Yes: Natan Mulubrhan Alemseged Reviewer #4: Yes: Ankit Agarwal ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org |
| Revision 3 |
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Relationship between anion gap and 28-day All-cause Mortality in Patients with Acute Pulmonary Edema: A Retrospective Analysis of the MIMIC-IV Database PONE-D-25-06101R3 Dear Dr. Tu, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support . If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Eyüp Serhat Çalık Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-25-06101R3 PLOS ONE Dear Dr. tu, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Eyüp Serhat Çalık Academic Editor PLOS ONE |
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