Peer Review History
| Original SubmissionMarch 23, 2025 |
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Dear Dr. Eshet, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Aug 07 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Avaniyapuram Kannan Murugan, M.Phil., Ph.D. Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. In the online submission form you indicate that your data is not available for proprietary reasons and have provided a contact point for accessing this data. Please note that your current contact point is a co-author on this manuscript. According to our Data Policy, the contact point must not be an author on the manuscript and must be an institutional contact, ideally not an individual. Please revise your data statement to a non-author institutional point of contact, such as a data access or ethics committee, and send this to us via return email. Please also include contact information for the third party organization, and please include the full citation of where the data can be found. 3. Thank you for stating the following in the Competing Interests section: “Dr. Bar declares receiving consulting fees from Merck Sharp & Dohme, Bristol-Myers Squibb, Roche, AstraZeneca, Novartis, Pfizer, Causalis, Bayer, and Takeda, and research grants from AstraZeneca, Takeda, OncoHost, Pfizer, ImmuneAI, Merck Sharp & Dohme, Roche, and Eli Lilly, all for the institute. The other authors declare no conflict of interest.” Please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials, by including the following statement: "This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests). If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared. Please include your updated Competing Interests statement in your cover letter; we will change the online submission form on your behalf. Additional Editor Comments: The study is very interesting and accordingly reviewers comments also reflected. However, reviewers raise many concern to address before consideration for publication. Address all the comments thoroughly point-by-point manner. Cite these potential articles (PMID: 21596819; PMID: 34462665). Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: Yes ********** Reviewer #1: The study addresses a clinically important, underreported adverse event associated with crizotinib use. The design is appropriate, the imaging data is interesting, and the results could raise awareness in clinical practice. However, several important corrections and improvements are necessary before publication. These include: 1. The abstract needs to mention the total number of patients and compare incidence rates between the crizotinib and non-crizotinib groups more explicitly. 2. Correct this typo (e.g., "TKI's" instead of "TKIs"). Language polishing is needed to improve readability. 3. The flow from introduction to methods could be more logically ordered (e.g., first describe the cohort, then imaging evaluation, then analysis). 4. The use of the χ² test and Monte Carlo validation is appropriate, but needs a clearer explanation in the Methods. 5. Confidence intervals (CI) for key results should be reported alongside p-values for incidence of arthropathy (e.g., 18% (95% CI: x–y%)). 6. The authors mention a longer follow-up time for crizotinib-treated patients but don't adjust statistically for it; suggest a time-to-event analysis (Kaplan-Meier) if feasible. 7. The clinical symptoms were often mild or absent—this limits the impact of imaging findings alone. The authors should discuss this discrepancy more critically: How clinically significant is the arthropathy? 8. Table 1 and Table 2 formatting should be improved (e.g., proper alignment of columns, p-values indicated). 9. The crizotinib treatment time row in Table 1 lacks corresponding column for the non-crizotinib group. Also, what about the female gender information in Table 1? 10. The reference list is short; the author should cite more works to enhance its clinical relevance. The study is novel and potentially important, but requires substantial revisions for clarity, robustness, and adherence to journal standards. Reviewer #2: Manuscript Title: Patients treated with Crizotinib for ALK-rearranged/ROS1-positive non-small cell lung cancer: a retrospective single-center study Summary and General Comments This is a retrospective observational study that evaluates the incidence and imaging characteristics of progressive arthropathy in ALK/ROS1-positive NSCLC patients treated with crizotinib, compared to those treated with other TKIs. The authors report a significantly higher incidence of progressive joint changes (18%, 6/34) among crizotinib-treated patients. This is a novel and clinically relevant observation that is not well described in the current literature. The imaging examples provided are clear and compelling. The study addresses an under-recognized adverse effect that could influence radiologic and clinical practice. However, the study is limited by small sample size, control group imbalance, potential survival bias, and lack of statistical adjustment for key confounders (mutation status, follow-up time). As written, the data suggest an association between crizotinib exposure and progressive arthropathy, but do not definitively establish a drug-specific causal effect. The authors’ call for increased awareness of this potential adverse effect is reasonable, but the strength of the conclusions should be tempered to reflect the limitations of the retrospective design and small cohort. Several methodological clarifications and adjustments are needed to strengthen the rigor and transparency of the manuscript: Major Comments 1. Control group imbalance and confounding From Table 1: • ROS1 mutation is present in 35% of the crizotinib group vs. 0% in the control group. • Average follow-up time is 185 weeks (crizotinib) vs. 121 weeks (controls), p = 0.02. No adjustment is made for this difference. Since ROS1-positive patients may have longer survival, and longer follow-up gives more chance for late toxicity to appear, the reported 18% arthropathy incidence may be inflated compared to the control group. Add either a Cox regression or multivariate logistic regression adjusting for follow-up duration and mutation type, or, at minimum, discuss this limitation clearly in the Discussion. Note that while the authors validate the chi-squared p-value using Monte Carlo simulation (p = 0.008), this does not address the more important issue of group imbalance and survival bias. 2. Definition and reliability of imaging assessment The definition of “progressive arthropathy” relies on a set of imaging findings, but the assessment process is not clearly described: • Were the radiologists blinded to treatment group? • Were readings performed independently or by consensus? • Was any inter-rater reliability calculated (e.g., kappa)? Please clarify these important methodological points. Without blinding or assessment of agreement, there is potential for observer bias. 3. Timing of toxicity onset vs. exposure In several cases, arthropathy occurred long after treatment initiation (e.g., 361 or 465 weeks), and it is not stated if the patients were still receiving crizotinib at the time of onset. Please clarify how many of the six patients were still on crizotinib when arthropathy first appeared, and for any patients off treatment, how long after discontinuation the findings were detected. This will inform the clinical interpretation of whether this is an on-treatment or delayed toxicity. 4. Clinical impact of arthropathy While the imaging findings are clear, the clinical relevance is not well detailed: • How many patients experienced pain, mobility limitations, or required joint replacement or other interventions? • What was the impact on quality of life or functional status? Adding this clinical data will greatly enhance the relevance of the findings. 5. Selection bias and survival bias As acknowledged by the authors, patients with shorter survival were unlikely to develop late arthropathy, resulting in survival bias. However, this issue is not sufficiently addressed in the interpretation of the results: the conclusion currently states “There is a higher incidence…” which overstates the certainty. Please modify this conclusion to reflect the limitations (e.g., “may be associated with higher risk,” or “was observed more frequently in this retrospective cohort, though subject to bias”). Minor Comments 1. Figure legends are overly descriptive and read like clinical notes. Please revise for clarity and conciseness — e.g., “Representative CT images of progressive shoulder arthropathy after crizotinib treatment.” The legends currently include long lists of arrows (red arrow, yellow arrow, orange arrow- which are not seen until Fig 3) and serial descriptions of individual images. For example, Figure 2a: please check the figures for this “Row 1: A1 – Pre-arthropathy CT image. B1 - progressive articular and bursa fluid accumulation (red arrow)…” Please revise for clarity and conciseness, following the style of standard figure legends. For example: “Representative CT images of progressive shoulder arthropathy following crizotinib treatment, showing synovial thickening, joint space narrowing, and bony deformity.” Similar revisions are suggested for Figures 2b, 2c, 2d, 3, and 4. 2. Repetitive phrasing in Discussion opening paragraph: “progressive arthropathy in one or more joints... progressive arthropathy leading to substantial subluxation...” suggest rephrasing to improve flow. 3. Tense inconsistencies: e.g., “Findings of progressive osteoarthritis were so far described…” should be “have been described...” 4. Table 1 layout: suggest reformatting with columns: Variable | Total (n=71) | Crizotinib (n=34) | No Crizotinib (n=37) | P-value 5. Mechanistic hypothesis: The discussion about possible neuropathic mechanisms should be framed more explicitly as hypothesis, given the retrospective nature of the study. Recommendation Minor revision This is a strong and clinically relevant study. The imaging data is valuable and adds important knowledge to the field. The methodological concerns, control group imbalance, confounding, survival bias, and definition of assessment, can be addressed through clarifications, more transparent reporting, and minor statistical adjustments. ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: No Reviewer #2: No While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Dear Dr. Eshet, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The manuscript has been assessed by three reviewers, and their comments are appended below. In addition, please address the following:
Could you please carefully address these comments? Please submit your revised manuscript by Dec 08 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Alejandro Torrado Pacheco, PhD Staff Editor PLOS ONE Journal Requirements: If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions??> Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes Reviewer #2: No Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** Reviewer #1: The corresponding author has adequately addressed the comments and effected the necessary changes in the manuscript. I recommend that the article be accepted for publication. Reviewer #2: The revised manuscript satisfactorily addresses all major and minor comments from the previous round. The authors added detailed statistical methods, clarified image assessment procedures, restructured tables and legends, and tempered the conclusions to match the data limitations. The competing-risk analysis appropriately adjusts for follow-up bias, and the overall presentation is clear and professional. One remaining limitation is that the data are not fully publicly available, as access is restricted via the institutional ethics committee. If ethically feasible, I encourage deposition of anonymized imaging-derived data in a public repository. Otherwise, the manuscript is technically sound, statistically appropriate, and clearly written. I recommend acceptance after editorial verification of the data-availability compliance. Reviewer #3: None for this revision. ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: No Reviewer #2: No Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] To ensure your figures meet our technical requirements, please review our figure guidelines: https://journals.plos.org/plosone/s/figures You may also use PLOS’s free figure tool, NAAS, to help you prepare publication quality figures: https://journals.plos.org/plosone/s/figures#loc-tools-for-figure-preparation. NAAS will assess whether your figures meet our technical requirements by comparing each figure against our figure specifications. |
| Revision 2 |
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Dear Dr. Eshet, Please submit your revised manuscript by Feb 01 2026 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Alejandro Torrado Pacheco, PhD Staff Editor PLOS One Journal Requirements: If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] To ensure your figures meet our technical requirements, please review our figure guidelines: https://journals.plos.org/plosone/s/figures You may also use PLOS’s free figure tool, NAAS, to help you prepare publication quality figures: https://journals.plos.org/plosone/s/figures#loc-tools-for-figure-preparation. NAAS will assess whether your figures meet our technical requirements by comparing each figure against our figure specifications. |
| Revision 3 |
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Rapidly progressive arthropathy identified on imaging of patients treated with Crizotinib for ALK-rearranged/ROS1-positive non small cell lung cancer: a retrospective single-center study PONE-D-25-06712R3 Dear Dr. Eshet, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support . If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, James Mockridge Staff Editor PLOS One Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-25-06712R3 PLOS One Dear Dr. Eshet, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS One. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr James Mockridge Staff Editor PLOS One |
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