Peer Review History
| Original SubmissionSeptember 15, 2025 |
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Dear Dr. Pavan, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Dec 20 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
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We note that you received funding from a commercial source: “Novartis Gene Therapies, Inc” Please provide an amended Competing Interests Statement that explicitly states this commercial funder, along with any other relevant declarations relating to employment, consultancy, patents, products in development, marketed products, etc. Within this Competing Interests Statement, please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials by including the following statement: "This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests). If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared. Please include your amended Competing Interests Statement within your cover letter. We will change the online submission form on your behalf. 3. Thank you for stating the following in the Competing Interests section: “I have read the journal's policy and the authors of this manuscript have the following competing interests: The NIH has filed patents on behalf of WJP on work related to NPC1 genes and the AAV gene therapy treatment of NPC1 (US Patent Publication Numbers 20180104289, 20210113635). FO and JF are at present, or were during the time of their contribution to this manuscript, employed by Novartis Pharma AG and received salaries and own stock in Novartis as part of their remuneration for employment; they have no competing interests as regards consultancies, patents or products in development or currently marketed. This does not alter the authors' adherence to all the PLoS ONE policies on sharing data and materials.” Please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials, by including the following statement: "This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests). If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared. Please include your updated Competing Interests statement in your cover letter; we will change the online submission form on your behalf. 4. We note that you have indicated that there are restrictions to data sharing for this study. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For more information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. Before we proceed with your manuscript, please address the following prompts: a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., a Research Ethics Committee or Institutional Review Board, etc.). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of recommended repositories, please see https://journals.plos.org/plosone/s/recommended-repositories. You also have the option of uploading the data as Supporting Information files, but we would recommend depositing data directly to a data repository if possible. We will update your Data Availability statement on your behalf to reflect the information you provide. 5. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. Additional Editor Comments : Dear Dr Pavan, Your manuscript was reviewed by three experts in the field and me. There is overall enthusiasm for the work and therefore, I encourage you to improve the paper by fully addressing the comments of all reviewers. By the way, In Fig 2C, the number 6 was missing from 546. I look forward to your revised submission and if you need more time, please let me know. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Yes Reviewer #2: Partly Reviewer #3: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** Reviewer #1: The manuscript by Epstein et al. uses AAV-mediated gene therapy to treat NPC and compares several therapy regimens, including different promoters, various routes of administration, and two treatment ages. Although not directly translatable to the clinical setting due to the natural limitations of using an animal model, this is a relevant study for preclinical research and is scientifically solid. The study concludes that there is no difference in phenotype improvement between a constitutive and a neuron-specific promoter; however, significant differences in phenotype improvement were observed depending on the route of administration (with ICV outperforming intravenous administration) and age (early treatment delays disease manifestations more efficiently). The manuscript is well-written, and the discussion was broad and touched on all major points. However, I am curious to know if the authors have assessed more parameters besides phenotype improvement, such as toxicity and immune response in the different groups. These could be valuable and could significantly increase the impact of this study. Regarding Figure 6: Have you quantified the images? Considering that many conclusions in the manuscript were drawn and based on the preservation of Purkinje cells, I strongly believe another assay and/or a quantitative measure should be performed to support these findings, and not rely solely on immunofluorescence staining. Regarding data presentation and editing: The text and the figures are not cohesive. In all figures, there are mismatches between the presentation and the description - for example, Figure 3D is mentioned in the text before 3B and 3C. Moreover, the legend in Figure 2 seems misplaced: there is no D in Figure 2, and no data on Purkinje cells in the figure. I suggest an extensive review of the figures and the results section to confirm they are aligned and coherent. When presenting the data for high and low CNV for FV, have the authors considered splitting into 2 groups? It may improve both the understanding of the graphs and include a direct comparison between the groups. If kept as is, please include a legend for the intermediate gray dots in the figures. Though understandable, it is not mentioned anywhere what they represent. Finally, I did not have access to the data, which should be immediately available as per the journal’s guidelines. Please provide the dataset as supplemental material or in a repository. Reviewer #2: The manuscript evaluates how timing and administration route affect AAV-NPC1 efficacy, concluding importantly that early treatment and effective brain delivery are essential for improving disease outcomes. The results are novel and relevant for advancing NPC gene therapy research. However, there are a series of major concerns/comments for the study. Importantly, the choice/justification of dose selection and evaluation of only single dose levels across administration routes make it challenging to definitively support the overall conclusion that systemic neonatal IV is comparable to ICV. Data provided in the manuscript support that neonatal AAV-NPC1 at a high and clinically relevant dose level (of approximately 1E14 vg/kg) is comparable to the single selected and evaluated ICV dose level, which based on brain weight extrapolation appears to be considerably lower than doses leveraged in current AAV9 ICV clinical trials for neurological indications. Major Comments to address • Recommend modification of manuscript title, as provided data does not definitively support the conclusion that neonatal IV is comparable to ICV, but rather compares 2 RoAs at single dose levels. Recommend for example: “Comparison of systemic neonatal and intracerebroventricular AAV9 gene therapy delivery demonstrating improved behavioral and phenotypic outcomes in a mouse model of NPC1”. • Please justify why ICV delivery was not evaluated in weaning-aged mice to compare with IV administration. This comparison is particularly relevant for clinical translation, as neonatal (P0/1) mice have an immature BBB and are comparable to late gestation humans, potentially overestimating brain biodistribution compared to P3+ animals. Since newborn screening for NPC is unavailable, treatment evaluation in neonates is less informative for determining whether IV or ICV delivery is superior for NPC. As the study links improved outcomes to effective NPC1 brain delivery, comparing AAV-NPC1 copy numbers in the brain after IV and ICV administration post-neonatally—when the BBB is fully formed—would be highly valuable. • State whether phenotype assessors were blinded to treatment; if not, provide justification. Clarify this in the methods section and on line 316. • Revise Figure 1 title to indicate that earlier administration improves cerebrum:liver ratios, not specifically due to facial vein RoA. • Since AAV escapes CSF after ICV delivery (as noted in line 223), why weren't liver copy numbers measured for ICV? Recommend including this analysis—it could clarify peripheral transduction alongside brain delivery efficiency. Were hepatosplenomegaly differences assessed across treatments? • Figure 2 should present graphs and analyses comparing EFS and MECP2 promoters, not just describe them in the text. • It appears that Figure 2 or its legend contains an error, as there is no panel labeled 2D, and panel 2B may be mislabeled. Please correct the references to Figure 2A–C in the paragraph beginning at line 263. • Line 381 include description of statistical analysis of ICV vs FV for the balance beam. • The connection between the sentence starting line 393 and the rest of the paragraph is not clear, suggest to add further clarification. • Figure 6 does not specify whether the analyses are conducted with EFS, MECP2 promoter, or a combination of both. Differences between ubiquitous and neuronal-specific transgene expression could influence the effect on neuroinflammation. Clarification is needed by including images for both promoters or providing a rationale for presenting selected data. Consistent evaluation of staining at 9–10 weeks across groups would provide valuable information. • Figure 6, due to the division of the FV group into high and low effectors, representative images for both groups should be included and clearly labeled. Currently, 6C may not accurately reflect an average representative image for FV. • The size and quality of the submitted Figure 6 images do not support the statements in the paragraph beginning at line 406. Formal image analysis of either whole sagittal sections or specific brain regions is needed to validate these claims. • Line 430 Agree with effect based primarily on age, however should provide further clarification that the effect may be a combination of early intervention to mitigate disease progression and better access to the brain specifically in neonatal mice with IV delivery. • Line 454 Add clarification that the P0/1 neonatal IV intervention in this study is not representative of clinical early intervention as outlined above. • Line 518 Can’t accurately make this conclusion due to lack of evaluation of peripheral biodistribution following ICV delivery vs IV. • The sentence beginning on line 521 should be deleted or substantially revised. Neonatal P0/1 IV treatment does not correspond to a realistic human intervention timepoint; a comparison with juvenile or weaning-age subjects would be necessary to draw this conclusion. • Line 575 Any further clarification to add on how this dose compares to extrapolated doses used in clinical evaluation of ICV AAV9 approaches in neurological disorders (e.g. Rett syndrome), given the selected 1E10 GC/mouse is dose is quite a conservative dose and IV selected dose is at the upper end of clinically used. Improved efficacy could feasibly be expected with higher ICV doses that when extrapolated to clinical doses are still feasible, which would change one of the fundamental conclusions of the manuscript. Minor recommendations to address • Line 225 suggest to specifically highlight higher liver copies in RO mice were due to later administration compared to neonatal FV mice. • Line 406 no evidence of specific microglial infiltration is provided, should be updated to more appropriate microglial activation. • Include reference to additional ICV evaluation of AAV-NPC1 by Hughes et al 2023 in line 54, 423, 587. Reviewer #3: Comments 1. Page 14, Line 108 “For the adult systemic (RO) cohort: Mice aged 31–34 d were anesthetized via isoflurane inhalation.” Mice aged 31-34 d are not considered adult mice. They are still considered juvenile or adolescent. 2. Page 14, Line 117 “For neonatal injections, vectors were delivered to entire litters of mice at P1 and genotyping was performed at 2 wk.” What is the translational relevance of “neonatal injections” as most patients with NPC could not be diagnosed at neonatal? 3. Page 14, Line 122 “Mice were weighed weekly beginning at 6 wk of age and as frequently as daily as they progressed toward humane end point.” Are there any reasons that the authors started to weigh the mice at 6 wk of age? 4. Page 25, Line 340 The weight of the mice influences their performance in the balance beam test. The authors need to verify that variations in balance beam test results are not attributable to weight differences among the groups. 5. Page 26, Line 365 “Mice that did not successfully traverse the beam without falling were not included.” What factors contributed to the mice's inability to cross the beam without falling? Are there valid reasons to exclude these mice from the study? Minor comments 1. Please ensure the reference format is consistent (e.g., refs. 21, 23, 29, 58). ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: Yes: Edina Poletto Reviewer #2: No Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] To ensure your figures meet our technical requirements, please review our figure guidelines: https://journals.plos.org/plosone/s/figures You may also use PLOS’s free figure tool, NAAS, to help you prepare publication quality figures: https://journals.plos.org/plosone/s/figures#loc-tools-for-figure-preparation. 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| Revision 1 |
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Comparison of neonatal systemic and intracerebroventricular AAV9 gene therapy delivery demonstrating improved behavioral and phenotypic outcomes in a mouse model of Niemann-Pick disease, type C1 PONE-D-25-44170R1 Dear Dr. Pavan, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support . If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Kent Lai Academic Editor PLOS One Additional Editor Comments (optional): The Editor found the revision satisfactory and moved to acceptance. Reviewers' comments: |
| Formally Accepted |
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PONE-D-25-44170R1 PLOS One Dear Dr. Pavan, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS One. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Kent Lai Academic Editor PLOS One |
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