Peer Review History
| Original SubmissionMay 19, 2025 |
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PONE-D-25-27082DMSO induces major morphological and physiological alterations in zebrafish embryosPLOS ONE Dear Dr. Mermelstein, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Aug 11 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Xu Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating in your Funding Statement: [This work was supported by Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq, funding number 302961/2021-6 to C.M., 308192/2021-4 to M.L.C.) and Fundação de Apoio à Pesquisa do Estado do Rio de Janeiro (FAPERJ, funding number E-26/203.930/2024 to C.M., E-26/204.077/2024 to M.L.C.).]. Please provide an amended statement that declares *all* the funding or sources of support (whether external or internal to your organization) received during this study, as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now. Please also include the statement “There was no additional external funding received for this study.” in your updated Funding Statement. Please include your amended Funding Statement within your cover letter. We will change the online submission form on your behalf. 3. Your ethics statement should only appear in the Methods section of your manuscript. If your ethics statement is written in any section besides the Methods, please move it to the Methods section and delete it from any other section. Please ensure that your ethics statement is included in your manuscript, as the ethics statement entered into the online submission form will not be published alongside your manuscript. Additional Editor Comments (if provided): [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Abstract & introduction: well written & adequate with logical flow. Methodology: - Well written, robust methodology, experimental setup is rigorous. - The details of DMSO used in this study is not provided (i.e., source, grade, quality etc.) despite being the referenced chemical. The preparation of DMSO, how its quality is maintained throughout the course of the experiments are also not mentioned. Results: - Well written, explanations are thorough. Good quality images used. - Figures and statistical analyses are comprehensive and effectively illustrate the dose dependent effect of DMSO - Table 1 is qualitative. Could be further strengtened using quantified values if available (eg percentage of changes etc with concomittant p values) Discussion: - Well-written, interesting hypothesis on mitochondrial involvement, ALK5 signalling and membrane fluidity. Could be further strengtened by a schematic diagram sumarizing the hypothesized mechanism. - Suggest to add future direction on how to validate these hypotheses. - Suggest to comment a bit more on the long term effect of DMSO by adding details why somite morphology was unchanged by prolonged DMSO exposure (despite initial effects). Reviewer #2: Revisión: The paper entitles “DMSO induces major morphological and physiological alterations in zebrafish embryos” is unique research where the authors analyze the DMSO influence over the development of zebrafish larvae. Overall is an excellent article that show the importance of be aware of all the components that a media possess. I have some concenrs that I point out as follows: - …”optical clarity of the developing embryo…”, the author could use the “transparency” to illustrate what they are trying to say. - Eliminate the word “All” in the line…”All these characteristics…”. - The second paragraph, which the authors present the DMSO problematic is kind weird. “…The most important characteristics of a solvent to be used as control, besides the ability to dissolve a given compound, is the lack of effects in the model…” The authors could introduce right away that DMSO is used as a control, for the different uses, and exemplifies that is wide used as a control or is part of the media component. - One question rises, why is commonly used the DMSO as part of the media or food components? If various authors have raised concerns about different results obtained before the use of DMSO on their experiment, why is still used? I agree with the authors that is essential to understand the mechanisms and to standardize this, but these are valid questions which could change some results obtained before for others authors. - On material and methods section: is important to clarify all the component used on this study, mainly because the authors are trying to explain a found a DMSO concentration that does not affect o affect the zebrafish embryos and larvae, so, the chemical and physical characteristics of the water are important to know. The negative control embryos and larvae is the media without DMSO? - Line: “…In total the experiment was repeated 3 times.” Technical repetition or biological repetition? On different days? - The E3 solution need to clarify the chemical components or is an industrial solution? - Result section: “DMSO is a universal solvent for compound that are not miscible in water. An analysis of the number of papers published in the Europe PMC data base using the descriptor DMSO resulted in 475,368 articles published in a period that spanned the years 1963 to 2025. Figure 1.” First, is quite ambiguous to search only the “DMSO” as a descriptor, because, a vast majority of buffers used on different experiments o assays used DMSO as a critical or subcritical chemical component. Second, I do not follow that this information is critical, because the authors are trying to link the use of DMSO on development studies over time. - Discussion: It could be beneficial for the authors and the lectors that the authors refer to the concentrations that affect the physiological changes. Also, all these DMSO effects at embryological level could be explained at the molecular and biochemical level? Reviewer #3: 1. Clarify the confirmatory nature and practical relevance of the study. The authors should explicitly acknowledge in both the Introduction and Discussion that the general toxic effects of DMSO at concentrations above 1% are already well documented in the literature and were therefore expected. The novelty of the present study does not reside in establishing that DMSO is harmful, but rather in the comprehensive and detailed phenotypic characterization of its effects across multiple biological systems, including the heart, notochord, musculature, pigmentation, and motility. Framing the study as a systematic phenotypic mapping will more accurately reflect its scientific value. In addition, the authors are encouraged to clarify the practical implications of their findings, particularly considering that most researchers are already aware that DMSO concentrations above 1% should be avoided. The manuscript would benefit from a more explicit discussion of potential applications of these data. For example: Could the phenotypes described here serve as positive controls or reference models for developmental toxicity? Are there specific scenarios in which concentrations of 1–5% DMSO are still used experimentally despite known risks? Toxicologists typically avoid exceeding known safety thresholds without justification. Therefore, it would strengthen the manuscript to contextualize when and why such higher concentrations might still be relevant in research. 2. Additional Suggestions: Include lower concentrations of DMSO (<1%) to help identify subtle or threshold-level effects that may be missed at higher doses. Incorporate molecular endpoints (e.g., markers of oxidative stress or apoptosis) to better connect morphological changes to underlying mechanisms. Clearly state the number of embryos (n) analyzed per experimental group in both the Results section and figure legends. Consider providing a supplementary table with raw or summarized quantitative data (mean ± SD or SEM) for each measured parameter to enhance transparency and reproducibility. Reviewer #4: The manuscript adds data to an already extensively studied phenomena. In a nutshell the results support the well established notion that DMSO is toxic at concentrations equal to or greater than 1%. It is worth noting that the authors are well aware of this as they cite most of the relevant literature. In my opinion the manuscript shows that the authors have established the conditions to conduct state of the art techniques such as high resolution microscopy and real time video microscopy. Now they can probe more risky hypothesis that produce clearly original results. To mind only comes that they probe concentrations below 1% of DMSO or probe solvents that have similar properties to DMSO. Another option is that they produce a critical review of the current literature, as to my understanding the last one was produced 10 years ago. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: Yes: INTAN SUHANA ZULKAFLI Reviewer #2: Yes: Dr Alan Briones Reviewer #3: Yes: Jordana Andrade Santos Reviewer #4: Yes: Alberto Jose Cabrera Quintero ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 1 |
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DMSO induces major morphological and physiological alterations in zebrafish embryos PONE-D-25-27082R1 Dear Dr. Mermelstein, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support . If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Hai O. Xu Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed Reviewer #4: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #4: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #4: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #4: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #4: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have satisfactorily addressed all comments by the reviewer. The discussion is strengthened by explaining the potential reasons for DMSO less damaging long-term effects making the manuscript more transparent and robust. Reviewer #2: (No Response) Reviewer #4: I have no additional comments. The authors have adressed my previous concerns. Unexpectedly they even included more experiments. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: Yes: intan suhana zulkafli Reviewer #2: Yes: Dr Alan Briones, PhD. Reviewer #4: Yes: Alberto Jose Cabrera Quintero ********** |
| Formally Accepted |
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PONE-D-25-27082R1 PLOS ONE Dear Dr. Mermelstein, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Hai O. Xu Academic Editor PLOS ONE |
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