Peer Review History
| Original SubmissionDecember 10, 2024 |
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Dear Dr. BHIKHOO, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Apr 16 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
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Kind regards, Amitava Mukherjee, ME, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. In your Methods section, please provide additional information regarding the permits you obtained for the work. Please ensure you have included the full name of the authority that approved the field site access and, if no permits were required, a brief statement explaining why. 3. Thank you for stating the following financial disclosure: This work is based on the research supported in part by the National Research Foundation of South Africa (Grant Numbers: UID:118755, UID:115581 and UID:150936). 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However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: This work is based on the research supported in part by the National Research Foundation of South Africa (Grant Numbers: UID:118755, UID:115581 and UID:150936). The views expressed are those of the authors and not of the funding agency. Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 5. Thank you for stating the following in the Competing Interests section: Raeesa Bhikhoo performed the Microbiology work under the supervision of Cornelius Carlos Bezuidenhout, Charlotte Mienie and Lesego Gertrude Molale-Tom. Krisdan Bezuidenhout contributed the regulatory framework contents. All authors contributed equally to the manuscript and approved the final version submitted. Please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials, by including the following statement: ""This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests). If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared. Please include your updated Competing Interests statement in your cover letter; we will change the online submission form on your behalf. 6. Your ethics statement should only appear in the Methods section of your manuscript. 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If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only. The following resources for replacing copyrighted map figures may be helpful: USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/ The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/ Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/ Landsat: http://landsat.visibleearth.nasa.gov/ USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/# Natural Earth (public domain): http://www.naturalearthdata.com/ [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes ********** Reviewer #1: Below mentioned are the query (marked ?) with respect to the text of the manuscript. Clarify Each one separately. The wastewater then undergoes a tertiary phase, whereby disinfection occurs that aids the removal of pathogenic microorganisms. How do these pathogenic microorganisms get removed in tertiary treatment, and what about the non-pathogenic microorganisms? South Africa is reported to have fourteen marine sewage plant outfalls, as reflected in Figure 1 Define marine sewage plant outfalls? According to the latest Green Drop report, a comprehensive audit of 850 wastewater systems revealed concerning findings: 208 plants were classified as being at critical risk, while 250 were deemed to be at high risk. On what basis/criteria were these 208 plants classified as being at critical risk, while 250 were deemed to be at high risk? Sea water contains many persistent organic pollutants, thus plastic debris in the ocean acts as a cleaning agent by absorbing these pollutants onto the surface of the plastics or MPs. It is a contradictory statement as microplastics are also the cause of pollution. Due to the particulate size of MPs, it is made available for ingestion by marine organisms ranging from zooplankton to mammals who mistake it for food. Define the size of MPs? Influent and effluent samples were taken by using the dip-sample technique and plastic pieces were then obtained by using mesh sieves in sizes of 20 μm, 100 μm, and 200 μm with a diameter of the sieve being 200 mm each (Filtration group, South Africa). What is the rationale behind taking these sizes as MPs can be smaller than this. Wastewater effluent (20 L) as well as a seawater sample (20 L) were also taken to set up a simulation of the outfall scenario. What is the rationale behind doing this simulation? The microcosms consisted of actual seawater and plastic pieces obtained from the coastal municipality’s wastewater effluent. What is the amount of Water and plastic taken? Microcosm 1 was set up to simulate the parameter at the ocean outfall near the diffuser. What are the parameters? These simulations were done using the following ratios, 3:2, 4:1, 9:1 of seawater to wastewater respectively and the plastic pieces obtained from the effluent to simulate the parameters in the ocean. How are these ratios determined, and does it imitate the dilution of wastewater in the ocean? All the plastics used in this experiment were rinsed with 1 mL ddH20 thrice before adding them to the microcosms to eliminate free-living or loosely attached microorganisms on their surfaces. Won’t it give the particle results as there are chances of washing off of some the natural fauna of the ocean? Enterobacteriaceae are a large family of Gram-negative bacteria, being the focus of this study due to their abundance in wastewater. Why Enterobacteriaceae when literature says Pseudomonas is most abundant in wastewater? MS Excel was used for descriptive statistics throughout this study. Explain this. What descriptive statistics were used? Observations based on the SEM images highlighted that the surface of the substrates might influence biofilm attachment, as plastics with a rougher surface with deep and multiple crevices showed the most biofilm formation. Have you compared the results with the smooth surface plastic? Of the 127 isolates, 21 were enumerated with a view to the plastics obtained from the influent and a total of 106 isolates from the plastics in the microcosms with a view to wastewater effluent. Why is there so much difference in the isolate number? Can it be due to the dilution difference as compared to the oceans? The 16S RNA Gene for forty-eight (48) isolates were sequenced and illustrated in a phylogenetic tree (Figure 7). Why only 48 isolates were chosen for sequencing? The genes tested for by endpoint PCR were Intl1, FOX, and MOX. Why were these genes taken, mention their importance? The MOX gene was present in the genomes of most of the isolates., On the other hand, the FOX gene was present in nine of the 59 isolates screened. Mention the number of isolates in each section clearly, and the rationale behind taking them, as the number of isolates is not constant throughout the study? Discussion Completely rewrite the discussion as it is more of results rather than discussion. ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: Yes: Prof (Dr) E. Subudhi ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Addressing the Insufficiency of Marine Outfall Regulations in Mitigating Microplastic and AMR Pollution from Wastewater Treatment PLOS ONE Dear Dr. BHIKHOO, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Aug 04 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Amitava Mukherjee, ME, Ph.D. Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions??> Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #2: Yes ********** Reviewer #2: (The title does not represent what the work has done.....The short title misguide the reader... I thought the paper would be about regulations and would not have experimental work.... One suggestion for the title is: “ Dilution of treated sewage in ocean by outfalls negatively impact water quality by harbouring microplastics with multidrug resistant bacteria “ or something like that.... Abstract I did not understand the last sentence in the abstract: Did you mean to say dilution of sewage in NOT and answer.....? Line 30 , in the abstrct you said that : Several isolates were resistant to carbapenems (doripenem and imipenem; 9% to 27%). But you should mention previous authors that have reported that even in secondary treated effluents (many ARB resistant to last resort antibiotics (imipinem, ertapenem, etc) were isolated , as reported by SCIENCE OF THE TOTAL ENVIRONMENT, v. 857, p. 159376-159386, 2023 ) and also from tertiary treated effluent (as Environ Sci Pollut Res 29, 36088–36099 (2022). https://doi.org/10.1007/s11356-022-18749-3). So, you should highlight the novelty of your work compared to previous studies. In addition, abstract should contain more results of the study . Half parto f the abstract is explaning regulation about outfall sewage discharge into oceans etc. you should highlight the main results obtained and how they impact and improve the current knowledge about this field (AMR spread from treated domestic wastewater). Such as the following sentence: ....our study crucially demonstrates that microplastic biofilms appear to expand this survival capacity beyond Enterobacteriaceae's known limits, creating an extended reservoir for antibiotic resistance dissemination in coastal waters. Methods: MIcrocosms set -up You should show all the different microcosms and characteristics in a Table (with the control and dilution tested and explain better the type of treated effluent (wastewater) from where you collected the microplastics to seed the microcosms.. ; it is hard to follow the rationale and all the details about the microcosms in the text (in results and discussion you explained that, but this should come on Methods. The same is valid for the genes tested : int1, MOX and FOX and why they were chosen to be tested. How many microplastic particles did you add in each microcosms ? was it fixed and equal in all conditions ? 50 particles ? or there was no number defined / exact ? Line 504: the 16S rRNA gene.... Line 513: The genes tested for by endpoint PCR were Intl1, FOX, and MOX Did you presented in methods why you have chosen these genes and the primers used ? what is FOX and MOX stands for ? Lie 570 to 572: revealed concerning multidrug resistance (MDR) patterns, with all identified species resistant to two or more antibiotics ??? did you mean to sai more than 2 classes of antibiotics ? because, MDR is When the bacteria is resistant to 2 or more than 2 different antibiotic classes, according to Magiorasko. And some bacteria has intrinsic resistance to some antibiotics, did you account for that ? and considered Only acquired resistance ? Conclusions Please be more straight foward and say the most importante results , conclusions and impact of the findings of this work. Try to write the 5 most important sentences (as highlights of your study here), and does not repeat results. ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org |
| Revision 2 |
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Marine Outfall Discharges Contribute to Coastal Microplastic Pollution and the Spread of Antimicrobial Resistance PONE-D-24-56806R2 Dear Dr. BHIKHOO, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Amitava Mukherjee, ME, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-24-56806R2 PLOS ONE Dear Dr. BHIKHOO, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Professor Dr. Amitava Mukherjee Academic Editor PLOS ONE |
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