Peer Review History
| Original SubmissionJuly 13, 2025 |
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-->PONE-D-25-37950-->-->Signal Mining and Analysis of Adverse Events of Isotretinoin: 20-year real-world pharmacovigilance analysis based on the FAERS database-->-->PLOS ONE Dear Dr. Bian, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== ACADEMIC EDITOR: The reviewers comments bellow should be fully addressed in your revised manuscript. ============================== Please submit your revised manuscript by Sep 21 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:-->
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Kind regards, Gisele Viana de Oliveira Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We are unable to open your Supporting Information file “Supporting Information.zip”. Please kindly revise as necessary and re-upload. 3. We note you have included a table to which you do not refer in the text of your manuscript. Please ensure that you refer to Table 5 in your text; if accepted, production will need this reference to link the reader to the Table. 4. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. 5. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions -->Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. --> Reviewer #1: Yes Reviewer #2: Yes ********** -->2. Has the statistical analysis been performed appropriately and rigorously? --> Reviewer #1: Yes Reviewer #2: Yes ********** -->3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.--> Reviewer #1: Yes Reviewer #2: Yes ********** -->4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.--> Reviewer #1: Yes Reviewer #2: Yes ********** -->5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)--> Reviewer #1: General Assessment This manuscript addresses a highly relevant and timely topic in dermatology. Isotretinoin remains a cornerstone in the treatment of severe acne, yet its safety profile, particularly concerning psychiatric disorders, inflammatory bowel disease (IBD), and teratogenicity, continues to be the subject of debate. The authors employ a robust methodological approach by integrating four pharmacovigilance signal detection methods (ROR, PRR, BCPNN, and MGPS) to analyze adverse events (AEs) associated with isotretinoin based on 20 years of data from the FAERS database. The study contributes to the field by consolidating known risks and identifying eight potential new AE signals not currently included in the drug label. However, despite its merits, the manuscript requires major revisions prior to acceptance. Major Comments Causality vs. Association The study relies on spontaneous reports, which inherently reflect association rather than causality. This critical distinction must be emphasized throughout the discussion and conclusion sections to avoid overinterpretation of signal strength. Bias in IBD Reports The authors acknowledge that over 84% of IBD reports were submitted by lawyers between 2009 and 2014, suggesting significant legal-driven reporting bias. While this is an important observation, the current framing may still overstate the strength of this signal. A more cautious interpretation is warranted. New AE Signals The inclusion of signals such as neonatal neuroblastoma, hypertrophic anal papilla, and hemihypertrophy is intriguing. However, these findings require more context regarding biological plausibility, previous literature, or mechanistic hypotheses before being suggested as candidates for label revision. Reference Errors Multiple entries throughout the manuscript display the placeholder “Error! Reference source not found.” This detracts from scientific credibility and should be resolved before further review. Methodological Clarity While the statistical methodology is robust, the threshold definitions (Table 2) are overly technical. The authors should include brief plain-language explanations to improve accessibility to a broader audience. Discussion of Teratogenicity and Pregnancy Events The paper successfully highlights the persistent issue of unintended pregnancies during isotretinoin use. The discussion would benefit from a comparative overview of pregnancy prevention programs (e.g., iPLEDGE) and why such systems may fail, including real-world patient compliance data where available. Minor Comments Please clarify whether the data extraction from FAERS was fully automated or manually curated after de-duplication. In the “Limitations” section, explicitly state that incidence cannot be inferred from FAERS data. It would be useful to include a supplemental table summarizing the eight novel AE signals not previously included in the label, with frequencies and reporting years. Recommendation Major Revision This is a comprehensive and potentially impactful pharmacovigilance study. However, improvements in the interpretation of key signals, discussion of biological plausibility, correction of formatting issues, and refinement of conclusions are necessary prior to publication. Reviewer #2: Some suggestions/considerations: 1-The article is original: The manuscript presents a novel pharmacovigilance study analyzing 20 years of real-world adverse event. 2-The study applies clear statistical formulas. Data cleaning, standardization and analysis steps are explicitly described. Results are presented with confidence intervals and comparative tables, supporting reproducibility. 3-The conclusions align with the presented data. 4- Language polishing: Revise for awkward or non-native phrasing, especially in the Introduction and Discussion sections (e.g., “strengthening preventive measures for pregnancy risks in patients is recommended” could be more concise and fluent). Consider professional English editing for clarity and tone consistency. 5- Clarify potential reporting bias: In the IBD section, the influence of legal-driven reports is well discussed. It would be helpful to include a short caution in the Conclusion to contextualize the strength of that signal. 6- Improve figure and table referencing: Ensure all tables and figures (e.g., Fig 1–3, Table 1–5) are properly described and referenced in the main text with interpretation. 7- Add clinical implications: The authors might briefly discuss how clinicians can integrate this signal-mining approach into practice or pharmacovigilance systems, increasing the real-world impact of the findings. ********** -->6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.--> Reviewer #1: Yes: MARCO ALEXNADRE DIAS DA ROCHA Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. 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| Revision 1 |
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Signal mining and analysis of adverse events associated with Isotretinoin: A 20-Year real-world pharmacovigilance study based on FAERS and EudraVigilance databases PONE-D-25-37950R1 Dear Dr. Bian We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Gisele Viana de Oliveira Academic Editor PLOS One |
| Formally Accepted |
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PONE-D-25-37950R1 PLOS One Dear Dr. Bian, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS One. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Gisele Viana de Oliveira Academic Editor PLOS One |
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