Peer Review History
| Original SubmissionFebruary 19, 2025 |
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PONE-D-25-09063Cellular repressor of E1A-stimulated genes 1 enhances skeletal muscle performance through the stimulation of muscle differentiation and fiber transition via Akt-mTOR signaling pathway activationPLOS ONE Dear Dr. Goto, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== Your manuscript has been assessed by two experts. They have expressed interest in the manuscript but also raised several concerns. Please address all comments by point-by-point adequately. In particular, we request a full response to the changes in grip strength. ============================== Please submit your revised manuscript by May 01 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Keisuke Hitachi Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating the following financial disclosure: “Grant-in-Aid for Scientific Research (Kakenhi) from the Japan Society for the Promotion of Science (20K06450 and 23K10881 to Hitoshi Yamashita, 21K17668 to Ayumi Goto, 18K11034 to Michihiro Hashimoto), YOKOYAMA Foundation for Clinical Pharmacology (YRY-2020 to Ayumi Goto), Naito Research Grant (Ayumi Goto), The Hibi Science Foundation (Ayumi Goto), and Chubu University Grant R (Ayumi Goto).” Please state what role the funders took in the study. If the funders had no role, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." If this statement is not correct you must amend it as needed. Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf. 3. Thank you for stating the following in the Acknowledgments Section of your manuscript: “The authors would like to thank M. Matsui, Y. Yamashita, Y. Nishimoto, Y. Endo, I. Matsuda, and K. Miyake (Chubu University) for their technical support. The work was supported by Grant-in-Aid for Scientific Research (Kakenhi) from the Japan Society for the Promotion of Science (20K06450 and 23K10881 to HY, 21K17668 to AG, 18K11034 to MH), YOKOYAMA Foundation for Clinical Pharmacology (YRY-2020 to AG), Naito Research Grant (AG), The Hibi Science Foundation (AG), and Chubu University Grant R (AG).” We note that you have provided funding information that is currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: “Grant-in-Aid for Scientific Research (Kakenhi) from the Japan Society for the Promotion of Science (20K06450 and 23K10881 to Hitoshi Yamashita, 21K17668 to Ayumi Goto, 18K11034 to Michihiro Hashimoto), YOKOYAMA Foundation for Clinical Pharmacology (YRY-2020 to Ayumi Goto), Naito Research Grant (Ayumi Goto), The Hibi Science Foundation (Ayumi Goto), and Chubu University Grant R (Ayumi Goto).” Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 4. When completing the data availability statement of the submission form, you indicated that you will make your data available on acceptance. We strongly recommend all authors decide on a data sharing plan before acceptance, as the process can be lengthy and hold up publication timelines. Please note that, though access restrictions are acceptable now, your entire data will need to be made freely accessible if your manuscript is accepted for publication. This policy applies to all data except where public deposition would breach compliance with the protocol approved by your research ethics board. If you are unable to adhere to our open data policy, please kindly revise your statement to explain your reasoning and we will seek the editor's input on an exemption. Please be assured that, once you have provided your new statement, the assessment of your exemption will not hold up the peer review process. 5. PLOS ONE now requires that authors provide the original uncropped and unadjusted images underlying all blot or gel results reported in a submission’s figures or Supporting Information files. This policy and the journal’s other requirements for blot/gel reporting and figure preparation are described in detail at https://journals.plos.org/plosone/s/figures#loc-blot-and-gel-reporting-requirements and https://journals.plos.org/plosone/s/figures#loc-preparing-figures-from-image-files. When you submit your revised manuscript, please ensure that your figures adhere fully to these guidelines and provide the original underlying images for all blot or gel data reported in your submission. See the following link for instructions on providing the original image data: https://journals.plos.org/plosone/s/figures#loc-original-images-for-blots-and-gels. In your cover letter, please note whether your blot/gel image data are in Supporting Information or posted at a public data repository, provide the repository URL if relevant, and provide specific details as to which raw blot/gel images, if any, are not available. Email us at plosone@plos.org if you have any questions. 6. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The Manuscript authored by Goto et al. aims to contribute to our understanding of CREG1's role in skeletal muscle function and differentiation, in addition to associated mechanisms. Overall, this paper is well-written and provides both in-vivo and in-vitro data to support the role of CREG1 in skeletal muscle. As such, I will provide some minor revisions below: 1. Where appropriate, please provide more references to support claims made in the introduction and discussion. Examples include lines 51-54 when discussing sarcopenia, and lines: 374-375 when discussing the proportion of fiber types in athletes. 2. Please define all terms/names upon first use in the manuscript, e.g., line: 64, NTERA-2 3. Please add the year of publication when referencing studies by author name. E.g., "Song et al. (Year)" 4. Although soleus Myh1 expression was higher in Tg mice, it was not statistically significant as reported in the abstract. Please specify this in the abstract, results and discussion (that Myh1 trended towards higher but was not significant) 5. Along the same lines, specify that MyoD1 trended towards lower in CREG1 knockdown cells but was also not significant 6. Line 368: should this say myh7, not myh1? 7. Line 391-393: "CREG1 is thought to be mainly supplied by the liver to other organs, including skeletal muscles, exogenous CREG1 may still influence skeletal muscle function in the absence of endogenous CREG1" - modify this sentence to specify that exogenous in this context means from non-muscle tissues (e.g., liver) and endogenous means produced within skeletal muscle 8. Make a limitations section following the discussion and move the mention of the lack of muscle performance data (line 456) to this section Reviewer #2: This manuscript by Goto et al. is aimed to determine the effect of tissue-specific CREG1 overexpression on skeletal muscle. Several points are unclear, and these should be addressed. 1) The conclusion that the increase in grip strength may be mediated by a shift in fiber type is not well supported. First, while it is true that fast-twitch fibers are often associated with greater maximal muscle strength, this is almost entirely explained by the fibers being larger. For example: PMID: 11148759, PMID: 21317219. There is no evidence provided that the muscles are larger. Indeed, in the transgenic, the soleus muscle are 15% smaller, while the EDL are 7.6% smaller (Table 1). Second, grip strength was only done with the forelimbs, which consist of almost entirely fast-twitch muscles (PMID: 22938020), like the plantaris of the hindlimb. Since the plantaris had no shift in myosin heavy chain (Fig 2), there is no rationale to presume that the myosin heavy chain composition of the forelimbs changed. Therefore, the conclusion that a shift in myosin heavy chain is mediating an increase in strength must either be supported with additional data or should be purged from this manuscript (Title, Abstract, Discussion) 2) All the individual data points must be shown for all the bar graphs. This is now common practice for rigorous presentation of data, and PLOS Data policy requires the authors to show the underlying data. 3) Figure 3. The blots and calculations for the total amount of IGF2R, Akt, and mTOR must be shown and quantified here. It is useful to know whether the increase in the phospho amount is due to 1) an increase in the fraction that is phosphorylated (i.e., strictly signaling) or 2) due to increases in the total amount of the protein with the same faction phosphorylated (i.e., not likely signaling). 4) Line 222. This is too vague to really understand which test was used when. Explicitly add which statistical analysis and comparisons were performed for each panel in the figure legends. 5) Line 37. State the test used to assess fatigue resistance. This has a major impact on interpretation of findings. 6) Line 109. Explicitly state here in the Methods the cell specificity of this transgenic. Most promoters are expressed in more than one tissue, especially at various times during development. aP2 is no exception. Add that information. 7) Line 110. Specify the breeding scheme. Were heterozygous mice breed to each other? Were the WT mice littermates of the transgenic mice, or were they from different groups? 8) Line 144. How was the myosin heavy chain staining analyzed. What software was use? Was it automated or semi-automated? Were all the fibers of every muscle analyzed, or only a sub-set? 9) Line 160. Was pen/strep used? This is a common additive to C2C12 cultures. If used, state how much? If not used, state this explicitly. 10) Line 236. Calculate and provide in the text the % difference in grip strength. Knowing the precise amount will help put this measure in the context of the % changes in myosin heavy chain. 11) Line 237-238. Was the difference in wire-hanging statistically significant? This needs to be clarified, since no indices of significance are provided in the Figure 1B. 12) Line 282. Why do the authors conclude that CREG1 is upregulated in skeletal muscle instead of adipocytes, which are in whole skeletal muscles (PMID: 32624006, PMID: 34382019)? This should be thoroughly defended or at least acknowledged in Discussion. Further, for precision, it should be stated that the upregulation is in muscle “tissue”. The current phrasing suggests it is up in muscle cells. 13) Figure 1B. Add the SEM to this panel, as it states in the figure legend. 14) Figure 2G, H. Rearrange these graphs such that the order of mRNA matches that of the proteins in the graph above each. In other words, they should be from left to right: Myh7, Myh2, Myh1, and Myh4. A reader is obviously interested in comparing the changes in protein to that of mRNA. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-25-09063R1Cellular repressor of E1A-stimulated genes 1 enhances skeletal muscle performance through the stimulation of muscle differentiation and Akt-mTOR signaling pathway activationPLOS ONE Dear Dr. Goto, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== Thank you for revising your paper. However, there still seem to be some minor concerns. Please revise your manuscript according to the reviewers' comments before publication.============================== Please submit your revised manuscript by Jul 30 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Keisuke Hitachi Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #2: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #2: No ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #2: This reviewer appreciates the revisions to the manuscript. However, one issue remains -- analysis of the wire hanging test. If statistics cannot be performed on the data in Fig 1B, then it is not appropriate to conclude that the WT is different than Tg group. By convention in rigorous scientific literature, quantitative data is not considered different unless it is statistically different. Therefore, this data should additionally be presented in a manner where proper statistics can be calculated, for example as was done in Ref #23, Egawa et al. Then, conclusions throughout the manuscript regarding the wire hang test must be based only on data where statistics are performed. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Cellular repressor of E1A-stimulated genes 1 enhances skeletal muscle performance through the stimulation of muscle differentiation and Akt-mTOR signaling pathway activation PONE-D-25-09063R2 Dear Dr. Goto, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Keisuke Hitachi Academic Editor PLOS ONE Additional Editor Comments (optional): In the PDF, Figure 1 was located at the end of the figures, so please pay attention to the order of the figures in subsequent proofs, etc. Reviewers' comments: |
| Formally Accepted |
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PONE-D-25-09063R2 PLOS ONE Dear Dr. Goto, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Keisuke Hitachi Academic Editor PLOS ONE |
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