Peer Review History
| Original SubmissionJanuary 7, 2025 |
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PONE-D-24-57517Calibrated muscle models improve tracking simulations without enhancing gait predictionsPLOS ONE Dear Dr. Maceratesi, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by May 18 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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When completing the data availability statement of the submission form, you indicated that you will make your data available on acceptance. We strongly recommend all authors decide on a data sharing plan before acceptance, as the process can be lengthy and hold up publication timelines. Please note that, though access restrictions are acceptable now, your entire data will need to be made freely accessible if your manuscript is accepted for publication. This policy applies to all data except where public deposition would breach compliance with the protocol approved by your research ethics board. If you are unable to adhere to our open data policy, please kindly revise your statement to explain your reasoning and we will seek the editor's input on an exemption. Please be assured that, once you have provided your new statement, the assessment of your exemption will not hold up the peer review process. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: It is an interesting and nice study. Calibration of musculoskeletal model is an important work. Authors tested three functional calibration methods and validated through tracking simulation and predictive gait simulation. Below are some suggestions. 1. In lines 187-188, for the nonlinear scaled model, it is suggested to provide some details instead of only referring to a paper. 2. The rational of Eq. (4) needs further explanation. 3. In Eq. (5), the first term, the error is not clearly defined. 4. In lines 211 and 212, what does it mean "modeled implicitly in the path constraints"? please explain "path" constraints and "implicitly" modelled. 5. In Eqs. (2,3), the variable Fm_max is not defined. In addition, is this variable a constant in this study? Why not include Fm_max as a model parameter? Between different subjects, Fm_max is changing. Reviewer #2: SUMMARY This paper describes an investigation into the effects of calibrating muscle parameters (muscle and tendon lengths) on joint torques and kinematics in a musculoskeletal simulation. Simulations were generated for 3 subjects. Overall, the authors concluded that there was not a notable difference between a typical non-linearly scaled model and the functionally-calibrated models. MAJOR COMMENTS Overall, I found this paper to be interesting and well-written. The authors provide a good overview of other similar studies, and provide justification for their chosen study design. The problem of calibrating muscle parameters remains a challenge in musculoskeletal modeling and simulation, and this study will be a useful addition to the literature. However, several clarifications and improvements are needed. My primary concern regarding this manuscript is that the authors’ conclusions do not seem to fully align with the data presented. Initially, I was also confused about the graphs presented. This is partially because the image quality in the proofs makes the images difficult to read, but it took me a long time to realize that Fig 2 (mean joint torques) does not contain the same information as Fig 4 (joint angle time histories). Clarity could be enhanced by adding titles to the images, since the unitless nRMSE values do not convey any information about the quantity being presented. Also, considering that the joint torques are a key outcome of this study, it would be helpful to include the time history plots for the joint torques (i.e., in the same format as Fig 4), at least as supplementary material. Aside from these misunderstandings, some of the conclusions in the paper do not seem to be well-supported. First, the paper only reports normalized (nRMSE) differences. This may obscure some substantial differences between the models. For example, in Fig 2a, the differences appear very large, but hip internal/external rotation torques are small in magnitude. Conversely, the differences in knee flexion/extension appear small, but may in fact be large in magnitude since knee flexion/extension torques are large during gait. It would enhance clarity to include non-normalized versions of Figs 2 and 3, perhaps as additional supplementary material. Similarly, in the third paragraph of Results > Gait Predictive Simulations, the authors state that “the kinematics was predicted slightly more accurately by NSMs compared to FCM0 (Fig 4).” Looking at Fig 4, I would characterize the differences in knee flexion as dramatically different. Knee flexion is the largest magnitude joint angle in gait, and has the clearest pattern during gait. The results from FCM0 are missing the characteristic peak, differing from both the NSMs and experimental data by what looks to be 30-50 degrees. There are similarly large differences in other joints, including HipAA, Hip IE, and to some extent HipFE. This mischaracterization of the joint angles casts doubt on the authors’ interpretation of the joint torque results in Figs 2 and 3, leading the reader to wonder if similarly dramatic differences are somewhat hidden by the nRMSE calculations. Another concern is related to the language used to describe the results. The authors provide a good overview of the literature in which similar studies used joint torques to “validate” the musculotendon parameter calibration. Nonetheless, I would argue that the only true gold standard for “validation” of the musculotendon parameters would be direct measurement from medical imaging to calculate the lengths of the muscle fibers and tendons. While the optimization procedure may produce more accurate joint torques, the muscle and tendon lengths may not be closer to the actual lengths in the human subject. I recommend the authors state that the results were “evaluated” by comparing to joint torques, rather than “validated” to avoid confusion. Related, there are a number of statements in the Discussion and Conclusion that results were “more accurate” or “less accurate” compared to some other quantity. The manuscript would be more clear if the authors stated precisely what was different, e.g., “correlation was significantly higher” or “nRMSE was significantly lower”. Please review the manuscript and address all occurrences of this issue. The first paragraph of the Introduction should include more references to the literature. There are a number of techniques which can be referred to as “predictive simulations”: direct collocation, reinforcement learning, direct shooting, etc. The authors should include references to other studies as appropriate. In addition, OpenSim now includes the Moco tool to perform direct collocation simulations, but it does not appear that the authors used Moco in this study. Please clarify this in the manuscript. MINOR COMMENTS Table 1: It would be helpful to add the last name of the first author for each reference, rather than just the reference number. There is also a typo in the far right column: “paramerters” should be “parameters” In the first paragraph under “Musculoskeletal Modeling and OpenSim Analyses”, should say “…using the ‘Scale Tool’ in OpenSim…” First paragraph under Results > Tracking Simulations, first word should be “FCM0”? I found the abbreviations FCM0, FCM1, etc difficult to remember which abbreviation corresponded to which type of calibration. As a suggestion, consider changing to something like FCM-baseline, FCM-bounds, FCM-gait, and FCM-sagittal. This would increase readability of the manuscript. In the Discussion, the authors mention that imprecise estimation of moment arms significantly affects joint torque calculations. This is true, but all modeling/simulation studies share this limitation. Also, if you are going through the trouble to use MRI to estimate moment arms, you could also use MRI to estimate muscle fiber length and tendon slack length. Mentioning muscle moment arms as a limitation does not seem to add much to the discussion – recommend to either remove this, or mention that with MRI estimates of several musculotendon parameters could potentially be made more accurate. The authors cite [8] Delp et al. 2007 for OpenSim, but the recommendations are to cite the more recent Seth A, Hicks JL, Uchida TK, Habib A, Dembia CL, Dunne JJ, et al. (2018) OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement. PLoS Comput Biol 14(7): e1006223. I did not see a reference to [28] Delp and Loan 1995 in the main text. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Yujiang Xiang Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Calibrated muscle models improve tracking simulations without enhancing gait predictions PONE-D-24-57517R1 Dear Dr. Maceratesi, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Xianlian Zhou Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewer two mentioned a few minor issues below, please correct these issues in the final manuscript. I noticed a couple of remaining minor issues: - Should the names of the tracking simulations TS0, TS1, etc be updated to match the new FCM-baseline, FCM-gait, etc? - In S2 File, why are there NaN values for some joint torques during gait? Were these omitted from the analysis? - There are some small typos such as double quotes facing the wrong direction in some of the edits made after revision Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Authors have successfully addressed my comments. All my concerns have been solved. It can be accepted now. Reviewer #2: Thanks to the authors for their careful attention to the issues raised during review. The clarity of the manuscript has been much improved. I noticed a couple of remaining minor issues: - Should the names of the tracking simulations TS0, TS1, etc be updated to match the new FCM-baseline, FCM-gait, etc? - In S2 File, why are there NaN values for some joint torques during gait? Were these omitted from the analysis? - There are some small typos such as double quotes facing the wrong direction in some of the edits made after revision ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Yujiang Xiang Reviewer #2: No ********** |
| Formally Accepted |
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PONE-D-24-57517R1 PLOS ONE Dear Dr. Maceratesi, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Xianlian Zhou Academic Editor PLOS ONE |
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