Peer Review History
| Original SubmissionDecember 23, 2024 |
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PONE-D-24-58876Influence of lighting on sleep behaviour, circadian rhythm and spontaneous blink rate in stabled riding school horses (Equus caballus)PLOS ONE Dear Dr. Murphy, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The requested changes are both in style and in substance. Specifically, the manuscript is both verbose and repetitive. The manuscript is long and could be significantly shortened without diminishing its impact by correcting these issues and by removing some items, as suggested by the reviewers. Furthermore, the link between SBR and sleep deprivation, as it pertains to horses, is circumstantial and the authours should be cautious with the interpretations of these data. Please submit your revised manuscript by Apr 12 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Bartell Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please amend your list of authors on the manuscript to ensure that each author is linked to an affiliation. Authors’ affiliations should reflect the institution where the work was done (if authors moved subsequently, you can also list the new affiliation stating “current affiliation:….” as necessary). 3. Please provide captions for Figure 9 in your manuscript. 4. Thank you for stating the following in the Competing Interests section: [I have read the journal's policy and the authors of this manuscript have the following competing interests: BAM is the Founder of Equilume Ltd., a spin-out company deriving from her research program as associate professor at University College Dublin and is a member of the company’s Board of Directors. BAM is a shareholder in Equilume Ltd. PK is an employee of Equilume Ltd. The treatment lighting condition in the present study comprised an Equilume Stable Light and is a commercially available product.]. Please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials, by including the following statement: ""This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests). 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Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Overall comments: An interesting study. I enjoyed reading this manuscript. There are some edits to be made, and those are noted below. Specific comments: Line 50-51: please recheck grammar for this sentence, it seems choppy jumping from talking about environmental factors in horses and then light stimuli. Perhaps it needs to be 2 separate sentences? Line 57-60: need an additional comma after hypothalamus Line 76-77: tie back in the connect to melatonin in the final sentence of this paragraph. Line 78-81: what about melatonin? The light type that stimulates the circadian clock is discussed, but the way the sentence structure is set up, it feels like it is currently lacking a mention of the optimal stimulation for melatonin. OR – rephrase the sentence. Perhaps the part after the semicolon should just be its own sentence. Line 97-101: is there research in any other mammalian species on red light and its impact on melatonin and the circadian rhythm? Line 131-133: please provide number of mares and geldings, as well as breed. Line 142-143: what type of forage? Be more specific Line 135: do you mean the stalls were partitioned by wooden panels? Not the stables? Line 152: Table 1 – just to clarify – the treatments were two separate barns? Or the same barn? It is unclear from this picture. If it is two separate barns, I would label the table to clarify. Line 187 and line 188: barn and stable are used here interchangeably. Please pick one term to use and correct throughout paper. Line 194-195: So there was no washout period in between the two trials? Is there literature to show this has no effect on variables being measured? Line 200: I don’t think table 3 is really necessary. The protocol is explained sufficiently in the prior paragraph. Line 347: consider moving the text in row 3 ( duration of behaviors in sec) to the bottom of the table – it’s a little jarring where it is now. And why for the results in this table are then H shown in all the rows, but not sec? I would either include both or neither, since you explain the units in row 3. Line 438: was there any effect of age on the horses on behavior and arousal? Line 489-498: Frankly, I do not this paragraph is necessary. There was no significant effect found by the researchers on time spent outside, and this did not seem to be a primary point of interest for the study. Especially considering the horses did different things when outside. While I agree looking at exercise and sleep patterns would be interesting, given the length of this paper, and sheer speculative manner of this particular paragraph, I would cut it. Figure 2: are there better-quality images for this figure? The ones provided are a bit blurry. Figure 3: were any pre-trials done to see if the location of the go-pro impacted horses lying down to sleep? It seems based on this picture, if the go-pro happened to be on the side the horse preferred to be on when lying down, that this could skew results. Figure 6-10: again, the resolution of these images seems a little blurry. Would recheck to make sure the best quality is uploaded for the manuscript. Reviewer #2: Review of “Influence of lighting on sleep behaviour, circadian rhythm and spontaneous blink rate in stabled riding school horses (Equus caballus)”. Overview: This manuscript describes a study in which horses were exposed to 2 lighting sources and a host of behavioral and physiologic response variables were evaluated. The results indicate that in general there were not detectable differences between the treatment and control groups. There were clear differences in behavior between day and night and there was good evidence for circadian rhythms. This manuscript could be improved by focusing on the clear and obvious findings. It is likely that a manuscript that was 1/3 to ½ the length would be much more clear and concise and be of value to those that are conducting research in this area. Strengths of this article include: 1. Focus on lighting and circadian patterns as they are associated with equine health and well-being. There is no doubt that this is an important area and in need of more work. The solution that is partially explored in this paper is feasible and makes good sense. There is data here that is one more piece of evidence in the growing literature in this area. 2. The use of well researched and developed LED lighting system is exciting and this manuscript is goo impetus to do more work in this area. Weaknesses of this article include: 1. The experimental design and potential negative impact of uncontrolled sources of variation make it nearly impossible to come to any clear conclusions. 2. This manuscript is twice as long as it needs to be. Almost every part of the manuscript could be reduced by ½ and in so doing would be come more focused and valuable. Specific comments: Title: Why are there 2 titles? Perhaps a requirement, but I prefer the 2nd shorter version. Page 2, lines 38-40; The final statement here is an over interpretation of the data from a study with many sources of variation. The terms “imply” and “may” indicate that the authors likely feel the same way. Perhaps this study contains evidence that would support more research to better understand these last two points? Page 3, lines 47-49; There are several places through here where greater specificity would improve the writing and strength of the paper. For example, be clearer about how welfare is compromised or what specifically changed. How is sleeping behavior influenced? Consider improving this specificity throughout. Page 5, lines 102-114; This long discussion in the introduction is meant to support the value of measuring spontaneous blink rate in horses as an indicator of changes in dopamine transmission. While this connection may exist, it is not established in horses and jumping to using it as a response variable is questionable. I think this could still be included as a response variable, but with much less emphasis on what it my be connected to in regard to dopamine physiology. Page 5, lines 115-118; Consider listing a clear hypothesis. Page 6, line 126; As soon as any research is being conducted the procedures should be Category C. If this was categorized as B, that should be reviewed and rectified so as not to cause confusion. Page 7, line 149; Here and throughout an effort should be made to clearly delineate stalls, from section of the barn from the barn. Is Table 1 a table or a figure? It seems to be more a figure, but it leads to some lack of clarity as to how the sections of the barn were separated. Is the dark line that separates A from B an actual partition? Page 7, line 159; It is unclear why red light was needed all night in this experiment, particularly as this was not the main focus of the experiment. It would have been better to investigate this in a separate experiment. Table 5; Is lateral recumbency sleep or awake? Based on later reading, I believe it to be categorized as sleep. For consistency and clarity, that should be listed here as it is for the other variables. In fact it would make sense to define each row with these terms. Page 15, lines 295-299; The large number of different individuals evaluating video footage is understandable and likely necessary. The use of agreement statistics to evaluate any vaiability or concerns here is good. However, the discussion of the lead author spot checking and a lack of description of how early training and calibration of students was performed leads to some concerns as to the additional noise that may be in this data. Page 15, line 306; Please clarify the differential choice to use Shapiro Wilkes in one place and D’Agostino & Pearson in another for normality testing. Page 15, lines 308-310; The description of ANOVA or Friedman’s here is unclear. What data was this conducted upon? What was the reasoning? More details of the models used should be listed. A better description of the model will be important in fully interpreting tables 6 and 7. “repeated measures” does not need to be abbreviated. Page 16, lines 337-341; This section on ICC and agreement should really be listed in the materials and methods. Page 17, lines 343-345; The primary sentence her that describes table 6 is unclear. Consider rewording. Table 6; In this table, the extra time spent out corresponds to extra time spent standing in the stall. These are both in the treatment group and the closest to “significance”. This simply highlights potential source of variation that are outside the primary aims of the experiment. Table 6; Why is there so much missing data at night? Much more than the day! Table 7; It is curious that the p-value for the comparison of total recumbency during the day of 458 vs 18 is >0.999, while many other p-values are much lower. Is this correct? Page 21, line 390; The results here need to be more clearly described. Ultimately, there were day vs night differences. Further is a question of whether there was any interaction between lighting condition and day or night. The way this is written could easily be misinterpreted to indicate that the lighting condition is a “part” of the night versus day effect. Page 23, line 448; The lack of a treatment effect in this study is not completely surprising, mostly due to the poor control of so many other sources of variation. At the end of the day, this is a poorly setup experiment, so positive or negative conclusions are very difficult to draw. Page 24, lines 467-479; Far too much discussion of a non-significant difference. Delete all of this. Page 25, lines 486-488; This is an interesting point and worth attention, particularly to others that may be developing or planning similar work. Page 25, lines 489-490; While nonsignificant, time outside the stable was on contrast that came closest to significance. Feels a bit as if results are being cherry-picked only if they fit the theories of the authors. In lines 491-492, details are give about activities that were not consistently recorded. This is problematic as it is impossible to really analyze. Pages 25-26, lines 499-510; Not critical, but again, information that could be helpful to others attempting to complete this kind of work. Page 26, line 512; “does not negatively influence” is an awkward double negative that may lead to an unclear interpretation. The attention to and reporting of a lack of effect of redlight at night should be removed from the manuscript. It was not a primary objective, and the experimental design does not allow for this analysis appropriately. Really a separate experiment should be conducted. At best, this should be a brief mention. Page 27, line 530; Rewording required. Page 27, lines 537-543; This paragraph should be deleted. This analysis goes beyond what the data presented can support. Pages 27-28, lines 544-563; Delete this paragraph. It is not supported by the results of this study and detracts from a clear and concise manuscript. Page 28, line 576; “quasi-experimental nature of this study” highlights the major weakness of this study. There is value in what was done here and the data/results should be presented in a much more clear and concise manner for others to use in designing future research in this area. Page 29, lines 596-597; Due to the fact that there is not a clear definition of what “circadian health” is, id don’t think that the data from this experiment support this statement. The horses in this study were not clearly stressed, but their health and well-being is not 100% clear. Mightn’t they have been healthier if they had more time in paddocks? Just unknown. Page 29, lines 598-600; None of this is really supported by the findings of this study, particularly any potential benefit of dim red light. More work is needed to support this. Page 29, lines 602-603; A comparison of wakefulness between the treatment and controlled groups during the day indicates no difference. It is the day vs night difference that is significant. This feels like it is being twisted to support the authors’ hypothesis that the treatment is better. References; There are too many references. The authors should be more selective. This is not a literature review. Figure 10; This figure could be improved by bringing the graphs closer together and using a common x-axis. General comments: 1. There are a number of sources of variation that could have easily been avoided and are disappointing to see. I will record some of those here. The LED lighting system was on a timer, but the control system was turned on and off manually, with greater variation. Some horses were blanketed overnight and some were not and it is unclear who and when and if this had any effect. One horse was fed concentrate meals while the others were not. Another source of variation. The exercise regimes and time out of the stable further contributes to variation. There is lack of clarity as to how this was accounted for in the statistical analysis. There is some talk of the “spillover” of light from the sections or stalls of the barn. The authors seem to indicate that this is not a large concern, and yet their research and much of the other research in this area, that a small exposure to other wavelengths can have a significant effect. All these things combined represent a significant concern in the interpretation of findings from this study. 2. One of the major highlighted findings is the “higher wakefulness during the day in the LED group”. This comparison is somewhat misleading as the difference really seems to lie in the fact that there was lower wakefulness recorded in the LED group at night. This difference does not translate into significant differences in sleep or recumbency. Every effort should be made to more clearly communicate and not potentially mislead here. 3. In the statistical analysis section of the materials and methods, consider not using an entire sentence to describe the software. The analysis performed is most important and the software and version used should simply be listed in parentheses. 4. There are different perspectives on my point here; therefore, a suggestion. Remove the term “significant” except for where it is defined in the statistics section. If anything is deemed “different” or larger or smaller, one would assume that the difference reported was significant, or it was undetectable. In the same vein, either list specific p-values or no p-values, but listing < or >0.05 throughout is not particularly helpful. I would lean towards listing specific p-values. 5. Tables 6 and 7 are foundational to this manuscript, but the differences and reasons to have both tables is unclear. Clearly there were different statistical analyses conducted for each table. Why is table 7 alone not sufficient? It becomes particularly challenging when trying to compare the numbers in the 2 tables, as they don’t really match up, for example total recumbency. The multiple comparisons in table 7 are kind of like an interaction from an ANOVA? I am concerned that these individual comparisons and a lack of a clear correction for these multiple comparisons can lead to an increased risk of Type I errors. 6. There are too many figures illustrating individual horse data from this study. Particularly because most of them are illustrating data without differences. Consider rethinking the most important figures or table that must be presented. I think the number could be reduced by ½ to 2/3rds. There is also not a clear reason to have individual horse data in all of the figures. 7. The general comment #1 above and various points through the paper lead to the conclusion that lack of control is a serious weakness for this manuscript. A potential way forward, to facilitate communication of the data and knowledge captured with this effort, would be to simplify the presentation of data considerably. Focus on table 6 or perhaps table 7 and go no further. Perhaps even a short communication that could be used to spur further research. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 1 |
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<p>Influence of lighting on sleep behaviour, circadian rhythm and spontaneous blink rate in stabled riding school horses (Equus caballus) PONE-D-24-58876R1 Dear Dr. Murphy, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Paul A. Bartell Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-24-58876R1 PLOS ONE Dear Dr. Murphy, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Paul A. Bartell Academic Editor PLOS ONE |
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