Peer Review History
| Original SubmissionNovember 17, 2024 |
|---|
|
Dear Dr. Yurong, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by May 24 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Ahmed Mohamed Maged, MD Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1.Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We note that your Data Availability Statement is currently as follows: All relevant data are within the manuscript and in Supporting Information files. Please confirm at this time whether or not your submission contains all raw data required to replicate the results of your study. Authors must share the “minimal data set” for their submission. PLOS defines the minimal data set to consist of the data required to replicate all study findings reported in the article, as well as related metadata and methods (https://journals.plos.org/plosone/s/data-availability#loc-minimal-data-set-definition). For example, authors should submit the following data: - The values behind the means, standard deviations and other measures reported; - The values used to build graphs; - The points extracted from images for analysis. Authors do not need to submit their entire data set if only a portion of the data was used in the reported study. If your submission does not contain these data, please either upload them as Supporting Information files or deposit them to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of recommended repositories, please see https://journals.plos.org/plosone/s/recommended-repositories. If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially sensitive information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. If data are owned by a third party, please indicate how others may request data access. 3. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information . 4. As required by our policy on Data Availability, please ensure your manuscript or supplementary information includes the following: A numbered table of all studies identified in the literature search, including those that were excluded from the analyses. For every excluded study, the table should list the reason(s) for exclusion. If any of the included studies are unpublished, include a link (URL) to the primary source or detailed information about how the content can be accessed. A table of all data extracted from the primary research sources for the systematic review and/or meta-analysis. The table must include the following information for each study: Name of data extractors and date of data extraction Confirmation that the study was eligible to be included in the review. All data extracted from each study for the reported systematic review and/or meta-analysis that would be needed to replicate your analyses. If data or supporting information were obtained from another source (e.g. correspondence with the author of the original research article), please provide the source of data and dates on which the data/information were obtained by your research group. If applicable for your analysis, a table showing the completed risk of bias and quality/certainty assessments for each study or outcome. Please ensure this is provided for each domain or parameter assessed. For example, if you used the Cochrane risk-of-bias tool for randomized trials, provide answers to each of the signalling questions for each study. If you used GRADE to assess certainty of evidence, provide judgements about each of the quality of evidence factor. This should be provided for each outcome. An explanation of how missing data were handled. This information can be included in the main text, supplementary information, or relevant data repository. Please note that providing these underlying data is a requirement for publication in this journal, and if these data are not provided your manuscript might be rejected. Additional Editor Comments: Please respond to all reviewers comments [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? -->?> Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available??> The PLOS Data policy Reviewer #1: No Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English??> Reviewer #1: Yes Reviewer #2: Yes ********** Reviewer #1: I thank the respected editor and authors for the chance to review this interesting manuscript. The authors have aimed to investigate the value of CA125 in the prediction of the outcome of threatened abortion and have reported a possible prognostic value. There are a few major and minor points I would like to address: Major points: 1. Considering that the authors have aimed at reviewing the predictive/prognostic value of CA125 for future events, if authors and editors see fit, the title of the manuscript could be changed to “Assessment of the prognostic value of CA125 for …”. A few sentencing changes should be made to the manuscript text to reflect this change. Keywords could also be adjusted. 2. Accordingly, using the QUAPAS (Quality Assessment of Prognostic Accuracy Studies) risk of bias assessment tool would be better suited in this manuscript, considering that this tool is designed explicitly for prognostic assessment studies while QUADAS tool was designed for diagnostic assessment studies. QUAPAS Tool: Lee, Jenny, et al. "QUAPAS: an adaptation of the QUADAS-2 tool to assess prognostic accuracy studies." Annals of internal medicine 175.7 (2022): 1010-1018. In addition, currently, authors have provided no explanations for the reasoning behind giving a judgment of high or unclear risk of bias. I suggest that after utilizing the QUAPAS tool, authors provide the reasonings behind their judgments of high or unclear risk of biases in any of the studies. 3. The authors have mentioned that “Diagnosis was assessed by combining SEN, SPE, PLR, NLR, DOR and AUC.”. Please further explain the analytic methodology, whether true positive, true negative, false positive, false negative values were extracted from articles or meta-analysis was somehow performed with SEN, SPE, PLR, NLR, DOR, and AUC values. Additionally, I suggest authors mention the packages used in STATA program, if any. 4. The utilized thresholds in studies are different. How was this issue addressed in the analysis, or were studies pooled together? If authors have pooled all analysis without considering the utilized cut-off, this could be more clearly mentioned in the methods or limitations section. 5. The authors could also add a summary of findings table and GRADE certainty of evidence assessment (Cochrane Systematic Review Handbook, Chapter 14: Completing ‘Summary of findings’ tables and grading the certainty of the evidence). Minor comments: 6. In general, the manuscript could benefit from professional English editing, as writing problems and incoherencies, especially regarding verb tense, currently exist. 7. In the methods section, authors have mentioned both Medline and PubMed as databases. Please either remove one of these databases or amend the sentence to something like: “Medline via PubMed”. 8. The authors could cite the two articles that could not be retrieved. 9. Table 1: The utilized assay in each study for detecting CA125 could be added to Table 1. Please use one form for synonymous words in Table 1 (venipuncture = venous blood sample). 10. Figure captions could use improvements; in their current form, they aren’t clear as standalone sentences. e.g: Fig3 could be updated to: “Summary receiver operating curve and empirical bayes estimates for the value of CA-125 in pregnancy outcome prediction in women with threatened abortion” Please update figure captions to be clear as a standalone sentence. 12. Currently, the raw data necessary for duplicating the analysis are not presented in the manuscript, in contrast to the data availability statement. Please either provide raw data checklist or change the data availability statement. 13. Line 171. A verb seems to be missing after “remaining 22 were.” Reviewer #2: Dear Authors thank you, please check the attached file Dear Editor, Thank you for the opportunity to review the manuscript. This is an updated systematic from “Role of serum biomarkers in the prediction of outcome in women with threatened miscarriage: a systematic review and diagnostic accuracy meta-analysis”. I'm not really sure what the clinical value of this is, some of the articles don't have precise inclusion and exclusion criteria. This factor is influenced by many items, such as VF, which is not mentioned in any of the articles. I have some comments: Title • The term “pregnancy outcomes” is broad and could mean different things, such as miscarriage, preterm labor, or live birth rates. A more specific definition of the outcomes being assessed would make the title clearer. Abstract • The phrase "clinical value of serum CA125 levels" is not very precise. It would be assisted by specifying whether the focus is on the prediction of miscarriage, pregnancy outcomes in general, or a generalized diagnostic strategy. • There is no discussion of why CA125 is being evaluated or its significance as a biomarker in threatened abortion. Briefly describing CA125's role in this context would improve accessibility for readers unfamiliar with the topic. • The conclusion claims “high diagnostic value” for CA125 but does not link this to clinical decision-making or how it could change current practice. Adding a practical implication would strengthen the conclusion. Introduction • While CA125 is introduced as a tumor marker, little is said about its physiological role in pregnancy and how it might be associated with risk of miscarriage. The reader is left to wonder why it is being measured. • Please explain the physiologic and pathologic items that may rise ca125 in pregnancy. Method • While the inclusion criteria for threatened abortion are well-described, they could benefit from referencing standardized definitions or guidelines, as variability in diagnostic criteria could introduce inconsistency. • Whilst heterogeneity due to threshold and non-threshold effects is accounted for, there is no mention of how other sources of heterogeneity, such as study design and population differences, are dealt with. Result • he sensitivity and specificity results show significant heterogeneity (I²=56.43% for sensitivity, I²=81.82% for specificity). Although heterogeneity sources are explored via meta-regression, the discussion of how this impacts the reliability of pooled estimates is lacking. • Although patients are from three continents, the specific proportions from each region are not detailed. Given that the meta-regression shows population differences significantly affect heterogeneity, this could undermine the generalizability of results. 8/13 of the articles are from Egypt. The results may not be very generalizable. Discussion • Whereas the discussion indicates that most of the study population was African, it does not provide adequate context for how this unbalance might affect the results' generalizability. An elaboration on demographic differences would be enriching. • While the manuscript notes variability in CA125 threshold values, it fails to address how this impacts clinical decision-making or propose solutions for standardization. ********** what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy Reviewer #1: No Reviewer #2: Yes: Marjan Ghaemi ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step.
|
| Revision 1 |
|
Assessment of the prognostic value of CA125 for miscarriage risk in patients with threatened abortion: a systematic review and meta-analysis PONE-D-24-52697R1 Dear Dr. Yurong, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Ahmed Mohamed Maged, MD Academic Editor PLOS ONE Additional Editor Comments (optional): All reviewers comments have been addressed Reviewers' comments: |
| Formally Accepted |
|
PONE-D-24-52697R1 PLOS ONE Dear Dr. Yurong, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Professor Ahmed Mohamed Maged Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .