Peer Review History
| Original SubmissionMarch 3, 2025 |
|---|
|
PONE-D-25-11485Characterization of mangrove mudflat sediment contamination by fecal bacteria and trace metals: A multivariate assessment in equatorial marine protected areas in GabonPLOS ONE Dear Dr. Leboulanger, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by May 17 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Linton Munyai, PhD Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating the following financial disclosure: “PhD stipend to Johann L.M. Happi by the ARTS program of IRD (French National Research Institute for Sustainable Development)” Please state what role the funders took in the study. If the funders had no role, please state: 'The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.' If this statement is not correct you must amend it as needed. Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf. 3. Thank you for stating the following in the Acknowledgments Section of your manuscript: “This research is part of a PhD thesis (JLMH) funded by the IRD ARTS scholarship program and conducted under CNAR agreements AR022/21 and AR043/22, granted by CENAREST and approved by the Agence Nationale des Parcs Nationaux (ANPN) (work permits AE22008 and AE220017), Republic of Gabon. The authors thank the Gabonese authorities for their administrative support, particularly National Park curators M. Gilbert Moukanga (Akanda NP), M. Luc Patrick Evezo’o (Pongara NP), and ANPN staff for their help with field sampling. Special thanks to Romain Gonzalvez for his help preparing samples for ICP-MS analysis, and to Professor Makaya M’voubou and Dr. Mokea-Niaty for their hospitality and assistance during granulometric and organic matter content analyses at the USTM polytechnic school and Biology Department laboratories.” We note that you have provided funding information that is currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: “PhD stipend to Johann L.M. Happi by the ARTS program of IRD (French National Research Institute for Sustainable Development)” Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 4. When completing the data availability statement of the submission form, you indicated that you will make your data available on acceptance. We strongly recommend all authors decide on a data sharing plan before acceptance, as the process can be lengthy and hold up publication timelines. Please note that, though access restrictions are acceptable now, your entire data will need to be made freely accessible if your manuscript is accepted for publication. This policy applies to all data except where public deposition would breach compliance with the protocol approved by your research ethics board. If you are unable to adhere to our open data policy, please kindly revise your statement to explain your reasoning and we will seek the editor's input on an exemption. Please be assured that, once you have provided your new statement, the assessment of your exemption will not hold up the peer review process. 5. Please include your full ethics statement in the ‘Methods’ section of your manuscript file. In your statement, please include the full name of the IRB or ethics committee who approved or waived your study, as well as whether or not you obtained informed written or verbal consent. If consent was waived for your study, please include this information in your statement as well. 6. We note that Figure 1 in your submission contain [map/satellite] images which may be copyrighted. All PLOS content is published under the Creative Commons Attribution License (CC BY 4.0), which means that the manuscript, images, and Supporting Information files will be freely available online, and any third party is permitted to access, download, copy, distribute, and use these materials in any way, even commercially, with proper attribution. For these reasons, we cannot publish previously copyrighted maps or satellite images created using proprietary data, such as Google software (Google Maps, Street View, and Earth). For more information, see our copyright guidelines: http://journals.plos.org/plosone/s/licenses-and-copyright. We require you to either (1) present written permission from the copyright holder to publish these figures specifically under the CC BY 4.0 license, or (2) remove the figures from your submission: a. You may seek permission from the original copyright holder of Figure 1 to publish the content specifically under the CC BY 4.0 license. We recommend that you contact the original copyright holder with the Content Permission Form (http://journals.plos.org/plosone/s/file?id=7c09/content-permission-form.pdf) and the following text: “I request permission for the open-access journal PLOS ONE to publish XXX under the Creative Commons Attribution License (CCAL) CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). Please be aware that this license allows unrestricted use and distribution, even commercially, by third parties. Please reply and provide explicit written permission to publish XXX under a CC BY license and complete the attached form.” Please upload the completed Content Permission Form or other proof of granted permissions as an ''Other'' file with your submission. In the figure caption of the copyrighted figure, please include the following text: “Reprinted from [ref] under a CC BY license, with permission from [name of publisher], original copyright [original copyright year].” b. If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only. The following resources for replacing copyrighted map figures may be helpful: USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/ The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/ Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/ Landsat: http://landsat.visibleearth.nasa.gov/ USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/# Natural Earth (public domain): http://www.naturalearthdata.com/ [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The manuscript presents a potentially valuable study on pollution levels in mangroves within Gabon. However, to enhance its impact and accessibility, I recommend revisions addressing the contextual information provided, the justification for certain conclusions, and the overall flow of the narrative. Specific Comments: • I strongly suggest modifying the title to include geographical identifiers beyond just "Gabon." Specifying "Gabon, Africa" or "Gabon, Central Africa" will immediately orient readers unfamiliar with the country's location. This small change will significantly broaden the audience who can quickly grasp the study's focus. • The abstract should begin by establishing the broader significance of mangroves, their global distribution, and their critical role in coastal ecosystems. Quantify their area cover globally and within Gabon if possible. Furthermore, clearly articulate the vulnerability of mangroves to pollution, emphasizing the potential consequences for biodiversity and ecosystem services. Then, explicitly connect this overarching context to the specific research question and approach undertaken in the study. This will highlight the relevance and importance of your work. • Introduce the primary anthropogenic threats faced by Gabon's mangrove ecosystems in the abstract. Mention specific activities like oil and gas extraction, urbanization, or deforestation, as applicable. Briefly explain how these threats might contribute to the observed pollution levels and how your findings inform potential mitigation strategies. This helps readers understand the real-world implications of your research. • Expand upon the role of Marine Protected Areas (MPAs), specifically the MNP mentioned in the manuscript. Explain the rationale behind designating these areas as MPAs. Detail the presence of Endangered, Threatened, and Protected (ETP) species within the MNP, highlighting ecologically sensitive zones within the protected area. This provides crucial context for understanding the potential impacts of pollution on vulnerable species and habitats and underlines the need for targeted conservation efforts. Discuss the ecological significance of mangroves harboring diverse marine fauna and how pollutants might negatively impact them. • Justification for Conclusions on MPA Effectiveness (Lines 36-40): The conclusion that MPAs are not effective based on the observed low contamination levels requires substantial justification. This statement seems premature and potentially misleading without further analysis. I recommend carefully re-evaluating this conclusion and providing a more nuanced interpretation. Consider the possibility that the existing contamination levels are lower than they would be without the MPAs, even if they are not zero. The existing MPA may contribute to preventing further contamination, which this experiment would not test. Acknowledge the limitations of the study design in assessing the effectiveness of the MPAs. • Include a literature review of case studies where MPAs have demonstrably reduced pressure on mangrove tidal flats. If such studies exist, cite them to provide a broader context for your findings. If studies show limited effectiveness in some contexts, acknowledge these and discuss potential reasons, such as proximity to industrial discharge or inadequate enforcement of regulations. Provide details regarding the proximity of industrial discharge to the studied MNPs and the number of industries located nearby. This information is crucial for evaluating the potential sources of pollution and assessing the effectiveness of the MPAs. • Similar to the abstract, the introduction should begin by introducing Gabon and emphasizing its significance, particularly in terms of its biodiversity, coastal ecosystems, and role in the regional economy. Provide key geographical and ecological information that is relevant to the study. • Lines 52-53 mention important coastal wetlands. Provide more detailed information about these wetlands, either in a table or in the text. Include details like their size, ecological characteristics, and any existing conservation status. • Expand the introduction to include specific information about Gabon's mangroves. Discuss their species diversity, area cover, and ecological importance. Link this information back to lines 52-53, highlighting the importance of these mangroves within the broader context of Gabon's coastal wetlands. Providing statistics and key facts about these mangrove ecosystems will significantly strengthen the introduction. Methodology: • Relocation of Lines 102-113: I agree that the information presented in lines 102-113 would be more appropriate within the introduction, as it provides background context relevant to the study site selection and environmental conditions. • Clarity on Data Collection Campaigns: Rephrase the term "data collection campaigns" to provide a clearer explanation of the specific activities involved. Describe the frequency, duration, and specific parameters measured during these campaigns. • Table 4 Terminology: Change "This work" to "Present study" in Table 4 for consistency and professionalism. Discussion and Conclusion: • Management Recommendations: The discussion and conclusion should include practical recommendations for management measures that can be implemented to protect Gabon's mangroves. These recommendations should be based on the observations and results of the present study. Consider suggesting specific actions related to pollution control, MPA management, or community engagement. By addressing these points, the authors can enhance the clarity, context, and impact of their research. The revisions will not only make the manuscript more accessible to a broader audience but also strengthen the conclusions and provide valuable insights for mangrove conservation in Gabon. The research has the potential to contribute significantly to the understanding of anthropogenic impacts on coastal ecosystems and inform effective conservation strategies. Reviewer #2: Nice paper. Important work regarding mangrove pollution. I have only identified unformatted text in the lines 412 and 413, item "4.3. Trace metals concentrations, contamination assessment and sources". ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No Reviewer #2: Yes: Fernando de Figueiredo Porto Neto ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step.
|
| Revision 1 |
|
Characterization of mangrove mudflat sediment contamination by fecal bacteria and trace metals: A multivariate assessment in equatorial marine protected areas in Gabon, Western Central Africa. PONE-D-25-11485R1 Dear Dr. Leboulanger, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Linton Munyai, PhD Academic Editor PLOS ONE Additional Editor Comments (optional): I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No ********** |
| Formally Accepted |
|
PONE-D-25-11485R1 PLOS ONE Dear Dr. Leboulanger, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Linton Munyai Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .