Peer Review History

Original SubmissionJanuary 14, 2025
Decision Letter - Francis Xavier Kasujja, Editor

PONE-D-25-01490Protocol for evaluating the Cost-Effectiveness of Mongolia's Sugar-Sweetened Beverages Tax using Double Machine LearningPLOS ONE

Dear Dr. Byambadorj,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please submit your revised manuscript by Apr 19 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Francis Xavier Kasujja

Academic Editor

PLOS ONE

Journal requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. Please note that PLOS ONE has specific guidelines on code sharing for submissions in which author-generated code underpins the findings in the manuscript. In these cases, we expect all author-generated code to be made available without restrictions upon publication of the work. Please review our guidelines at https://journals.plos.org/plosone/s/materials-and-software-sharing#loc-sharing-code and ensure that your code is shared in a way that follows best practice and facilitates reproducibility and reuse.

3. Please amend either the abstract on the online submission form (via Edit Submission) or the abstract in the manuscript so that they are identical.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Does the manuscript provide a valid rationale for the proposed study, with clearly identified and justified research questions?

The research question outlined is expected to address a valid academic problem or topic and contribute to the base of knowledge in the field.

Reviewer #1: Yes

Reviewer #2: Yes

**********

2. Is the protocol technically sound and planned in a manner that will lead to a meaningful outcome and allow testing the stated hypotheses?

The manuscript should describe the methods in sufficient detail to prevent undisclosed flexibility in the experimental procedure or analysis pipeline, including sufficient outcome-neutral conditions (e.g. necessary controls, absence of floor or ceiling effects) to test the proposed hypotheses and a statistical power analysis where applicable. As there may be aspects of the methodology and analysis which can only be refined once the work is undertaken, authors should outline potential assumptions and explicitly describe what aspects of the proposed analyses, if any, are exploratory.

Reviewer #1: Yes

Reviewer #2: Partly

**********

3. Is the methodology feasible and described in sufficient detail to allow the work to be replicable?

Descriptions of methods and materials in the protocol should be reported in sufficient detail for another researcher to reproduce all experiments and analyses. The protocol should describe the appropriate controls, sample size calculations, and replication needed to ensure that the data are robust and reproducible.

Reviewer #1: Yes

Reviewer #2: No

**********

4. Have the authors described where all data underlying the findings will be made available when the study is complete?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception, at the time of publication. The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: No

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above and, if applicable, provide comments about issues authors must address before this protocol can be accepted for publication. You may also include additional comments for the author, including concerns about research or publication ethics.

You may also provide optional suggestions and comments to authors that they might find helpful in planning their study.

(Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: I have reviewed the manuscript and am pleased with the detailed explanation and its quality. I hope the study went well and look forward to reading the final paper.

Reviewer #2: Protocol for evaluating the Cost-Effectiveness of Mongolia’s Sugar-Sweetened Beverages Tax using Double Machine Learning

The paper aims to estimate the cost-effectiveness of the SSB tax on health outcomes and savings in Mongolia. The study employs a Markov cohort model combined with Double Machine Learning. The proposed analytical approach is methodologically sound and innovative, integrating economic modeling with causal inference techniques. However, the protocol lacks a sufficiently detailed description of the methods, which is crucial for assessing the robustness and feasibility of the study. By addressing these methodological concerns and enhancing transparency in model specification, data sources, this research could provide stronger evidence to inform public health policy in Mongolia and beyond.

Abstract

1. Authors say “Given the limited research on the causal relationship between SSB consumption and health outcomes is scarce, we conduct a Cost-Effectiveness Analysis (CEA) using a Markov cohort model and Double Machine Learning (DML) to control for confounding factors and refine causal estimates”.

Nowadays a lot of evidence exist about the causal effect of SSB on obesity-related diseases.

Data inputs and model specification

1. To strengthen the study, it would be beneficial to include a figure illustrating the overall modeling process. For example, the change in kcal will be modeled using own price elasticities. For change in obesity,… so the reader is engaged and interested in the methodology.

2. Model Specification and Justification: The protocol should provide a more comprehensive description of the Markov cohort model. Some information should be detailed as follows:

o “Disease” in the Markov model is obesity or obesity-related diseases?

o Describe the state transition probabilities, and assumptions regarding disease progression, mortality and remission. It would be good to include these parameters in table 1.

o Mortality rates come from GBD data source, that will conclude in February 2024, but this date already passed.

3. Is there information about hospitalization of people with obesity?

4. Trends in obesity prevalence will be considered, or it will be constant over time?

5. It should clarify how DML is integrated within the modeling framework and how DML will control for confounding?

6. It would be worthwhile to write a paragraph describing Stata command: the ‘ddml’ command.”

7. I went to ref 23 and I could not find information on disease costs. Please add this information in an appendix.

8. Proportion of SSB intake by population: 44.5% I don´t understand this input. Nearly 50% of total energy intake comes from SSBs? Sounds too much.

9. Target population: 0-100 years. In other sections it says 2-100.

10. The cost of implementing SSB tax in Mongolia is from an US reference as a % of the SSB tax revenue. While it was done previously, a discussion about this assumption should be presented.

11. An analysis through performance indices would be interesting. With it, you could clarify how a model such as the Random Forest can capture model nonlinearities compared to LASSO.

12. It would be worth considering techniques such as SHAP (Shapley Additive Explanations), as they facilitate the interpretation of the model results, summarizing the impact of each characteristic on the prediction and how each variable contributes to the predictions.

Assessment of cost

I could not assess how healthcare expenditures will be estimated.

Assessment of benefit

I could not assess how DALYs and QALYs will be included in the model.

Minor changes

It would be worthwhile adding the definition of the acronym LASSO (Least Absolute Shrinkage and Selection Operator) before mentioning the acronym.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: Yes: Abdillah Ahsan

Reviewer #2: Yes: Ana Basto-Abreu

**********

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Revision 1

Thank you for the constructive feedback. We have addressed all comments in the attached Response to Reviewers document and updated the manuscript accordingly (with and without track changes).

Attachments
Attachment
Submitted filename: Response to Reviewers.docx
Decision Letter - Francis Xavier Kasujja, Editor

Protocol for evaluating the Cost-Effectiveness of Mongolia's Sugar-Sweetened Beverages Tax using Double Machine Learning

PONE-D-25-01490R1

Dear Dr. Byambadorj,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Francis Xavier Kasujja

Academic Editor

PLOS ONE

Formally Accepted
Acceptance Letter - Francis Xavier Kasujja, Editor

PONE-D-25-01490R1

PLOS ONE

Dear Dr. Byambadorj,

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team.

At this stage, our production department will prepare your paper for publication. This includes ensuring the following:

* All references, tables, and figures are properly cited

* All relevant supporting information is included in the manuscript submission,

* There are no issues that prevent the paper from being properly typeset

You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps.

Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

If we can help with anything else, please email us at customercare@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Francis Xavier Kasujja

Academic Editor

PLOS ONE

Open letter on the publication of peer review reports

PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.

We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.

Learn more at ASAPbio .