Peer Review History
| Original SubmissionOctober 26, 2024 |
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PONE-D-24-48526Classification of mountain-based rail transit stations and analysis of passenger flow influencing mechanismsPLOS ONE Dear Dr. Zou, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jan 25 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Qing-Chang Lu Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. Please match your authorship list in your manuscript file and in the system. 3. Please include a caption for figure 1 and 3. 4. Please note that PLOS ONE has specific guidelines on code sharing for submissions in which author-generated code underpins the findings in the manuscript. In these cases, we expect all author-generated code to be made available without restrictions upon publication of the work. Please review our guidelines at https://journals.plos.org/plosone/s/materials-and-software-sharing#loc-sharing-code and ensure that your code is shared in a way that follows best practice and facilitates reproducibility and reuse. 5. Thank you for stating the following financial disclosure: [Funding: This study is jointly supported by the National Natural Science of China [grant number: 52302386], and the China Postdoctoral Science Foundation [grant number: 2023M730430]. All funds were received by Qingru Zou. The funders had role in study design, data collection and analysis.]. Please state what role the funders took in the study. If the funders had no role, please state: ""The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript."" If this statement is not correct you must amend it as needed. Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf. 6. Please upload a copy of Figure 1, 2, 3, and 4, to which you refer in your text on page 13 and 14. If the figure is no longer to be included as part of the submission please remove all reference to it within the text. Additional Editor Comments: There are important issues to be addressed as pointed out by the reviewers. Please provide detailed responses. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Figures and some of the references were missing, so it was hard to review the manuscript. Moreover, this work presents some interesting results about a specific case study but it dose not have any theoretical contribution. Reviewer #2: This paper based on mountain passenger flow data and built environment data,urban rail stations, this article divides stations into six categories, focuses on mountainous features such as the average longitudinal slope of roads, road network length, and road growth coefficient. It mainly examines walking accessibility around rail stations, transfer convenience, surrounding development intensity, and station passenger flow data. The K-means clustering method is applied to classify Chongqing’s rail transit stations. Subsequently, OLS, GWR, and MGWR regression models are established for different classifications to analyze the stations. Here are some of my suggestions. In section 1 Question 1. Reference sorting and citation format. Question 2. There is poor continuity between paragraphs, and the explanation of the three single-indicator classification approaches is vague. Question 3. Pay attention to the paper alignment. In section 2 Question 1. Pay attention to the spelling of words, e.g. H0 is "the", not "he". Question 2. Pay attention to the format of the serial numbers of formulas 5, 6, and 7. Question 3. Pay attention to the format of the subsequent tables on the spread. Question 4. Where are the eleven indicators?Not thirteen? Question 5. Pay attention to the part of speech of the table name, the "descriptive" in the second table should be changed to "description", and what exactly does the third column "abridge" refer to? In section 3 Question 1. K represents the cluster type, so how can the K value be used to describe the number of clusters? Question 2. Put the 189 stations after visualizing Chongqing in front of your analysis to observe easily. Question 3. What are the parameters used to measure VIF and Moran'I,and how does the magnitude of their values affect the results? Question 4. In the description of Table 4, what does the regression results of the two models of MGWR and GWR are all greater than 3,3 come from, and what does it mean, and what does it mean that the MGWR model can be based on GWR? Question 5.What is the meaning of “**”in table 5? Question 6. What are the references to independent variables, global indicators,and local indicators? Question 7. Please describe Figure 4 as necessary. Question 8.In section3.2.1 ,the last sentence is repeated, pay attention to the coherence of the sentence. In section 4 Question 1. The content of the conclusion is cumbersome, and it briefly summarizes how to achieve this study, what conclusions have been reached, and how it can be applied to real life. Question 2. If any, the shortcomings of the study and the future direction of the study should also be mentioned. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-24-48526R1Classification of mountain-based rail transit stations and analysis of passenger flow influencing mechanismsPLOS ONE Dear Dr. Zou, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Apr 11 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols . We look forward to receiving your revised manuscript. Kind regards, Qing-Chang Lu Academic Editor PLOS ONE [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #2: (No Response) Reviewer #3: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #2: (No Response) Reviewer #3: Partly ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #2: (No Response) Reviewer #3: No ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #2: (No Response) Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #2: (No Response) Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #2: (No Response) Reviewer #3: I appreciate the opportunity to review this paper as an outside reviewer from the initial round of revisions. I send my gratitude to the authors, who worked hard to address the initial feedback that they received which helped me in conducting this review. They have made substantive improvements, most notably to the results section and should be commended for their efforts. This is an interesting topic (Mountain Transit) that has not been well considered in the research record. However, upon my review of this manuscript, I found some worrying aspects of this research that the other reviewers did not previously discuss. I believe these need to be addressed. There are multiple areas in the data and methodology section where the authors did not justify their selection of method and parameters. This could negatively impact the reproducibility of this work. I am deeply concerned about the use of OLS and GWR in this study on what I believe is discrete count data. I would like to provide the authors an opportunity to address this feedback, and to hopefully clear up some of my trepidations. For this reason, I have suggested major revisions at this time. I offer the following comments, with a particular focus on the methodology section which needs the most clarification: Introduction Section Literature Review: Page 5, section 1.1.1 — Please consider replacing the word ‘subway stations’ in your section header with ‘urban rail rapid transit stations’, as this better encapsulates above ground and below ground stations. Study Area: Page 8, section 1.2 — It is unclear to me whether the 10 referenced rail lines are all rapid transit lines, or if they include other rail modes such as commuter rail or light rail. This should be stated. Data and Methodology Section: Page 8, section 2.1 — As a reader, it would be helpful to understand why the authors chose the K-means clustering algorithm when there are other unsupervised classification methods available including DBSCAN, HDBSCAN, OPTICS, or Self-Organizing Maps (SOMs). Some studies have shown that these methods are more accurate classifiers than k-means, and the DBSCAN family in particular is used for spatial clustering which is often added as a component in transit studies. I do not think that the authors should have to use one of these methods, but it would be nice if they offered a deeper theoretical background justifying their choice of clustering method. Page 9, section 2.1.1, 1st sentence — Why were these four indicators chosen? Please justify the selection criteria used in choosing these indicators. Page 9, section 2.1.1, Indicator 1 — What is the data source for the POI data? Page 9, section 2.1.1, Indicator 3 — Why was 500 meters chosen as the threshold value for the accessibility analysis? Is this based off of travel survey data or other measurements of passenger willingness to walk to a station? Page 12, section 2.2.1, Indicator 1 — If this indicator is meant for “properties of the station itself”, then why would the indicator include “whether [a station] is close to a mega commercial area” as a factor? This is a built environment variable. Also, what constitutes a “large transfer station”? Is this based off of passenger flow statistics? Page 13, section 2.2.2 — As a reader I would personally find it more helpful for the authors to state the independent and dependent regression variables being used in the modeling. It is not all that helpful to show a generic OLS formula. I would like to see how this formula is being applied by the authors to advance the research question. I provide the same feedback for the GWR model, all variables should be discussed in the context of the additional spatial component of the model. Page 13, section 2.2.2 — Passenger flow data, to my understanding, is a form of discrete count data demonstrating the number of passengers boarding or alighting at a station. Such data should generally be modeled using count models, such as those in the Poisson family (Poisson, Negative Binomial) or their spatial counterparts. Can the authors please justify their selection of OLS and its spatial counterparts (GWR and MGWR)? The authors only cite one example of OLS being used by Loo et al. in the literature review. The properties of the flow data is also not deeply explained in section 2.2.1. Perhaps it is not a count type data, which would then justify the use of OLS. I would appreciate clarity from the authors on this subject. Analysis of Results Section Page 15, section 3.1, cluster 1 — What are ‘composite-type’ stations? This is a very unusual terminology. From my understanding, these stations have the highest passenger volumes, but I am not sure what the word ‘composite’ has to do with passenger volumes. Pages 17-20, section 3.2.1 — The authors should have explained their use of VIF and Moran’s I as diagnostics in the methods section, it is unusual that these formulas are being introduced and discussed methodologically in the results section. Also, the use of European Distance Band for the Moran’s I needs to be justified as this can have major implications on the precision of the findings. The corrections and adjustments to the results and conclusion are very appreciated. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #2: No Reviewer #3: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Classification of mountain-based rail transit stations and analysis of passenger flow influencing mechanisms PONE-D-24-48526R2 Dear Dr. Zou, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Qing-Chang Lu Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #3: I would like to commend the authors for addressing the revisions that were suggested to them in the first round and also for deeply considering my own comments in the second round of revisions. Having read the edits and the authors' responses to my comments, I feel confident that they have added the missing level of methodological detail that I described to them previously. Their explanation for choosing OLS and K-means is also appreciated, and the reorganized manuscript makes intuitive sense. In combination, these edits should make the study more impactful and replicable for scholars interested in urban rail. At this time, considering the efforts of the authors and increased quality of the manuscript, I would recommend this work for publication in PLOS One. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #3: No ********** |
| Formally Accepted |
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PONE-D-24-48526R2 PLOS ONE Dear Dr. Zou, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Qing-Chang Lu Academic Editor PLOS ONE |
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